Clone BS07064 Report

Search the DGRC for BS07064

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG12736-RA
Protein status:BS07064.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07064.3prime Sequence

890 bp (825 high quality bases) assembled on 2006-01-06

> BS07064.3prime
ATGGTCTAGAAAGCTTTTAACAATCCACGAAGACTTTTGATAACTTGTTC
TTGGGCAGGTCAAGGGACGGCAGGCGCTGCGTCACCATACCGGTAGCCAC
CGTCGCTCCGTTCTCGCGAATTGTGAAGGCTTGGCCCGGAGTCATGACCA
TTTTCCGCAGCAGCGTGACGCGCACCTGGCCATGCTCACCCGGCATAAGC
ATAGCCTCACTTGGAACTATGTCAATTCTAGCTGGAACATTCCACGTCTG
GCTGAAGAGCTGCTGTATATACTTGGAGAGCATGGGCTTGACACGACCAC
CCTCGGCCCGCGATAGCAGATACATGGAGCCTTCAAAGTGGTTGGATATA
TCCTCGGAGCCGGTTGCGCACAGTAGCATTCCCCGCTCCACGGCGGATAT
CTTAATACCTCGCAGCAGTGCGCCGACGTTCTCGCCAGCCTGTGCCTGAG
GCACGCTCTTCCGGAATATCTGGATGTCGCTGATGCTTGTCTTCAGGTTC
TGATTGAAGCCCAGTAGGTCTGCATCCGCGTTCCGGGGAATGGTGCCCCT
TTTGATGGTTCCCACGACCACGGTTCCCCTTCCGGGTACCGTAAAAGCAT
TGTCTATTGGCAGGATAAATGGGGACGAGATATCGCGCTGCGGCGTTGGT
ATGTAAGAGTCGCATTGCTCAAGTAGCTTTTCAATTGACGGAACCCCGAA
CTCCGATTTATCTTCGCGAAGGGCCAGCAGCGCTGAGCCACAAATTACCG
GGCTATTCACGCCATCAAAGCCGAAATCACTTAGCATCTCACGCATCTCG
ATCTCGACCAGTTCCAGCACCTCCTGGGTCACCAAATCGGCCTTGTTTAT
AAACACTATGATGCGCTGGATGCCCACTTGTTTTGCCAGA

BS07064.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-PA 1371 CG12736-RA 498..1371 890..17 4320 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-RA 1711 CG12736-RA 744..1617 890..17 4340 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7508875..7509548 217..890 3340 99.7 Plus
2R 25286936 2R 7508621..7508822 17..218 1010 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:03:34 has no hits.

BS07064.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:53 Download gff for BS07064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-PA 499..1371 17..889 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:47 Download gff for BS07064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-PA 499..1371 17..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:02:03 Download gff for BS07064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 745..1617 17..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:35 Download gff for BS07064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 745..1617 17..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:35 Download gff for BS07064.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7508621..7508820 17..216 100 <- Plus
2R 7508875..7509547 217..889 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:02:03 Download gff for BS07064.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3396126..3396325 17..216 100 <- Plus
arm_2R 3396380..3397052 217..889 99   Plus

BS07064.5prime Sequence

903 bp (792 high quality bases) assembled on 2006-01-06

> BS07064.5prime
GAAGTTATCAGTCGACATGAGCGGACTCCTTCCGAAGTTGTGGCGCCAAT
GTGAAGCGGGGCTAGTGCGCCGTATCAGCCAGGCACTGATTGGACCCGGC
GCCAGTCAGAGCCGGTGGACAGGGACCCGTCTCCTGGCCACCAGTGCGGA
TAAAAATCCGGCCCCGGGGCTGCGGGAGCTGCCCCACTGCAATGTGGGCA
CCATTGGTCACGTTGACCATGGTAAAACGACCCTGACCGCCGCCATTACC
AGAATCCAGTCACAGAAGGGTCTGGCGGAGTACCTGTCCTACGACCAGAT
TGATCGGGCGCCCGAGGAGAAGGCGCGTGGCATAACTATAAATGCTTGCC
ATATTGGGTATTCCACTACAGAACGCACCTACGCTCACACGGATTGCCCG
GGTCATGCGGACTACATAAAGAACATGATCTCGGGCGCCTCCCAAATGGA
TGGCGCCATTCTAGTGGTGGCTGCCACCGATGGTCAAATGCCCCAGACTC
GCGAGCACCTTCTTCTGGCAAAACAAGTGGGCATCCAGCGCATCATAGTG
TTTATAAACAAGGCCGATTTGGTGGACCAGGAGGTGCTGGAACTGGTCGA
GATCGAGATGCGTGAGATGCTAAGTGATTTCGGCTTTGATGGCGTGAATA
GCCCGGTAATTTGTGGCTCAGCGCTGCTGGCCCTTCGCGAAGATAAATCG
GAGTTCGGGGTTCCGTCAATTGAAAAGCTACTTGAGCAATGCGACTCTTA
CATACCAACGCCGCAGCGCGATATCTCGTCCCCATTTATCCTGCCAATAG
ACAATGCTTTTACGGTACCCGGAANGGGAACCGTGGTCGTGGGAACCATC
AAAAGGGGCACCATTCCCCGGAACGCGGATGCAGACCTACTGGGCTTCAA
TCA

BS07064.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-PA 1371 CG12736-RA 1..887 17..903 4416 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-RA 1711 CG12736-RA 247..1133 17..903 4424 99.9 Plus
EfTuM-RB 1776 CG6050-RB 427..867 181..621 325 72.6 Plus
EfTuM-RA 1720 CG6050-RA 371..811 181..621 325 72.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7509159..7509642 903..420 2409 99.8 Minus
2R 25286936 2R 7509707..7510111 421..17 2025 100 Minus
2R 25286936 2R 13508181..13508423 379..621 315 75.3 Plus
Blast to na_te.dros performed on 2015-02-13 00:37:47 has no hits.

BS07064.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:54 Download gff for BS07064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-PA 1..886 17..902 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:49 Download gff for BS07064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-PA 1..886 17..902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:26:45 Download gff for BS07064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 240..1132 10..902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:49 Download gff for BS07064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 240..1132 10..902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:49 Download gff for BS07064.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7509160..7509640 422..902 99 <- Minus
2R 7509707..7510118 10..421 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:26:45 Download gff for BS07064.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3396665..3397145 422..902 99 <- Minus
arm_2R 3397212..3397623 10..421 99   Minus

BS07064.complete Sequence

1403 bp assembled on 2007-10-17

GenBank Submission: FJ635712

> BS07064.complete
GAAGTTATCAGTCGACATGAGCGGACTCCTTCCGAAGTTGTGGCGCCAAT
GTGAAGCGGGGCTAGTGCGCCGTATCAGCCAGGCACTGATTGGACCCGGC
GCCAGTCAGAGCCGGTGGACAGGGACCCGTCTCCTGGCCACCAGTGCGGA
TAAAAATCCGGCCCCGGGGCTGCGGGAGCTGCCCCACTGCAATGTGGGCA
CCATTGGTCACGTTGACCATGGTAAAACGACCCTGACCGCCGCCATTACC
AGAATCCAGTCACAGAAGGGTCTGGCGGAGTACCTGTCCTACGACCAGAT
TGATCGGGCGCCCGAGGAGAAGGCGCGTGGCATAACTATAAATGCTTGCC
ATATTGGGTATTCCACTACAGAACGCACCTACGCTCACACGGATTGCCCG
GGTCATGCGGACTACATAAAGAACATGATCTCGGGCGCCTCCCAAATGGA
TGGCGCCATTCTAGTGGTGGCTGCCACCGATGGTCAAATGCCCCAGACTC
GCGAGCACCTTCTTCTGGCAAAACAAGTGGGCATCCAGCGCATCATAGTG
TTTATAAACAAGGCCGATTTGGTGGACCAGGAGGTGCTGGAACTGGTCGA
GATCGAGATGCGTGAGATGCTAAGTGATTTCGGCTTTGATGGCGTGAATA
GCCCGGTAATTTGTGGCTCAGCGCTGCTGGCCCTTCGCGAAGATAAATCG
GAGTTCGGGGTTCCGTCAATTGAAAAGCTACTTGAGCAATGCGACTCTTA
CATACCAACGCCGCAGCGCGATATCTCGTCCCCATTTATCCTGCCAATAG
ACAATGCTTTTACGGTACCCGGAAGGGGAACCGTGGTCGTGGGAACCATC
AAAAGGGGCACCATTCCCCGGAACGCGGATGCAGACCTACTGGGCTTCAA
TCAGAACCTGAAGACAAGCATCAGCGACATCCAGATATTCCGGAAGAGCG
TGCCTCAGGCACAGGCTGGCGAGAACGTCGGCGCACTGCTGCGAGGTATT
AAGATATCCGCCGTGGAGCGGGGAATGCTACTGTGCGCAACCGGCTCCGA
GGATATATCCAACCACTTTGAAGGCTCCATGTATCTGCTATCGCGGGCCG
AGGGTGGTCGTGTCAAGCCCATGCTCTCCAAGTATATACAGCAGCTCTTC
AGCCAGACGTGGAATGTTCCAGCTAGAATTGACATAGTTCCAAGTGAGGC
TATGCTTATGCCGGGTGAGCATGGCCAGGTGCGCGTCACGCTGCTGCGGA
AAATGGTCATGACTCCGGGCCAAGCCTTCACAATTCGCGAGAACGGAGCG
ACGGTGGCTACCGGTATGGTGACGCAGCGCCTGCCGTCCCTTGACCTGCC
CAAGAACAAGTTATCAAAAGTCTTCGTGGATTGTTAAAAGCTTTCTAGAC
CAT

BS07064.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-RA 1371 CG12736-PA 1..1371 17..1387 6855 100 Plus
EfTuM-RB 1470 CG6050-PB 438..680 379..621 315 75.3 Plus
EfTuM-RA 1470 CG6050-PA 438..680 379..621 315 75.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-RA 1711 CG12736-RA 247..1617 17..1387 6855 100 Plus
EfTuM-RB 1776 CG6050-RB 625..867 379..621 315 75.3 Plus
EfTuM-RA 1720 CG6050-RA 569..811 379..621 315 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7508875..7509642 1187..420 3840 100 Minus
2R 25286936 2R 7509707..7510111 421..17 2025 100 Minus
2R 25286936 2R 7508621..7508822 1387..1186 1010 100 Minus
2R 25286936 2R 13508181..13508423 379..621 315 75.3 Plus
Blast to na_te.dros performed on 2014-11-26 14:44:58 has no hits.

BS07064.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:39 Download gff for BS07064.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 1..1371 17..1387 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:33 Download gff for BS07064.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 344..1712 17..1385 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:45 Download gff for BS07064.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 247..1615 17..1385 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:40 Download gff for BS07064.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 337..1714 10..1387 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:29 Download gff for BS07064.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 247..1615 17..1385 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:29 Download gff for BS07064.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7508623..7508820 1188..1385 100 <- Minus
2R 7508875..7509640 422..1187 100 <- Minus
2R 7509707..7510111 17..421 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:45 Download gff for BS07064.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3397212..3397616 17..421 100   Minus
arm_2R 3396128..3396325 1188..1385 100 <- Minus
arm_2R 3396380..3397145 422..1187 100 <- Minus

BS07064.pep Sequence

Translation from 16 to 1386

> BS07064.pep
MSGLLPKLWRQCEAGLVRRISQALIGPGASQSRWTGTRLLATSADKNPAP
GLRELPHCNVGTIGHVDHGKTTLTAAITRIQSQKGLAEYLSYDQIDRAPE
EKARGITINACHIGYSTTERTYAHTDCPGHADYIKNMISGASQMDGAILV
VAATDGQMPQTREHLLLAKQVGIQRIIVFINKADLVDQEVLELVEIEMRE
MLSDFGFDGVNSPVICGSALLALREDKSEFGVPSIEKLLEQCDSYIPTPQ
RDISSPFILPIDNAFTVPGRGTVVVGTIKRGTIPRNADADLLGFNQNLKT
SISDIQIFRKSVPQAQAGENVGALLRGIKISAVERGMLLCATGSEDISNH
FEGSMYLLSRAEGGRVKPMLSKYIQQLFSQTWNVPARIDIVPSEAMLMPG
EHGQVRVTLLRKMVMTPGQAFTIRENGATVATGMVTQRLPSLDLPKNKLS
KVFVDC*

BS07064.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-PA 456 CG12736-PA 1..456 1..456 2334 100 Plus
EfTuM-PB 489 CG6050-PB 48..466 34..442 1148 51.2 Plus
EfTuM-PA 489 CG6050-PA 48..466 34..442 1148 51.2 Plus
Ef1alpha100E-PD 462 CG1873-PD 3..323 53..336 321 28.1 Plus
Ef1alpha100E-PC 462 CG1873-PC 3..323 53..336 321 28.1 Plus