Clone Sequence Records
BS07065.3prime Sequence
935 bp (805 high quality bases) assembled on 2006-01-06
> BS07065.3prime
ATGGTCTAGAAAGCTTCTATATCTTAATCAGATTATTATTGATGTTCTGC
TGGCGTTTGCGCTTTGCATTCATGGCGTCAACAATTGGCTGCCGCTTGGC
ATTGTATTTCTTGTTTAGCTGTTCGATCTCCAGCTCCATTTCGTGATCGA
TGTTGCACAGCCGCTGGTTCAGATCGTCGAAGGTAAGGAACTTGAGGAAC
TCAAACTCACCCTCAACATAGGCGTGCGATTGCGTATGCATATGCTGATT
CTGATATGCGGGCGGCGGTTGAGCTGGAGCCGCTGCCGGTATTCCCTGCT
GTCCCATTGGCGCAGCGTTGCTGAGCAGCAGATTCGGTTGATTGTTGAGC
GCGATGAGTTGTTCGTTCATCAGGGGATAAGCCATCAGAACTTGCTGCTG
CTGCTGGTGCTGCTGCAGACCATACTGATTAATGGCGGAGATCTGCTGGA
ACTGCATTTCCATGTTGTGCTCCCAGTTGTTCAAATCGTTGGCCCCGCTT
GCCAGATGCTGTTCATCCTGCTGTTGTTGTTGCTGCTGCTGTTGTTGTTG
TTGTTGCTGCTCCGCTGCTGCCGGAGAATACTCTGTGGCTATGGGTTTTT
CATCGCCACGGCCATCTCCCGCATTTTTGCGATCGAAGTGCTCCAGGAAC
TGCGGCCTGTAGCGGTTTCGCGGCTTCTGGTCGTCGTTGTTTTTGGCCGT
TGTGGAGTCGTCCGAATCGGAGTTGATTACCATAGTGCCCAAGTTCGACT
CCAGCTCCACCATTGTGCCGCTGTCAACTGCCGGCATGTCCAGAGGAGAT
GCTGCCGAAGAGGCCGCTGCAGGAGCAGCTGCCTTGGACAGGTTCCTTAG
TCACCCGGCCCCAAAGTGCCCTCATCCACACCTTGCTCTGCATGCGCTAT
CATGGTGGCATCTGAGGCTGAGCTCTGTTGGTATT
BS07065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11228-PA | 2010 | hpo-RA | 1175..2010 | 852..17 | 4180 | 100 | Minus |
| CG11228-PA | 2010 | hpo-RA | 1091..1174 | 935..852 | 420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hpo-RB | 2804 | CG11228-RB | 1199..2118 | 935..17 | 4575 | 99.9 | Minus |
| hpo-RA | 2503 | CG11228-RA | 1199..2118 | 935..17 | 4575 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:43:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19494682..19495404 | 17..739 | 3615 | 100 | Plus |
| 2R | 25286936 | 2R | 19495460..19495658 | 738..935 | 945 | 99.5 | Plus |
Blast to na_te.dros performed 2015-02-02 19:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| diver2 | 4917 | diver2 DIVER2 4917bp | 4015..4057 | 191..149 | 116 | 74.4 | Minus |
BS07065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:55 Download gff for
BS07065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-PA | 1091..2010 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:50 Download gff for
BS07065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11228-PA | 1091..2010 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:02:03 Download gff for
BS07065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 1199..2118 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:11:08 Download gff for
BS07065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 1199..2118 | 17..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:11:08 Download gff for
BS07065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19494682..19495403 | 17..738 | 100 | <- | Plus |
| 2R | 19495461..19495658 | 739..935 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:02:03 Download gff for
BS07065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15382187..15382908 | 17..738 | 100 | <- | Plus |
| arm_2R | 15382966..15383163 | 739..935 | 99 | | Plus |
BS07065.5prime Sequence
895 bp (851 high quality bases) assembled on 2006-01-06
> BS07065.5prime
GAAGTTATCAGTCGACATGTCTGAGCCAGAGGTGACCAGCGTTGTAGATA
TGAAATCGCCCAACATATCCTCCTCCTGCTCCTTCTTCAAGCTGAAGAAG
CTGTCGGAGGAGTCGCTTCTGCAGCCGCCGGAAAAGGTCTTCGACATTAT
GTACAAGCTGGGCGAGGGCAGCTATGGATCAGTCTACAAGGCAGTGCACA
AGGAAAGCAGCTCCATTGTGGCCATCAAGCTGGTGCCGGTGGAGTCCGAC
CTGCACGAGATTATTAAGGAGATATCCATTATGCAACAATGCGACTCGCC
GTATGTGGTGCGCTATTACGGCTCCTACTTCAAGCAGTATGACCTGTGGA
TCTGCATGGAGTACTGTGGCGCCGGCAGCGTCTCCGACATTATGCGTCTG
CGCAAAAAGACGCTGACGGAGGACGAGATAGCCACTATTCTGTCGGACAC
TCTGCAGGGCTTGGTCTATCTGCATCTGCGTCGCAAGATCCATCGCGACA
TCAAGGCGGCCAACATCCTGCTCAATACCGAAGGCTATGCTAAGTTGGCC
GATTTCGGAGTCGCTGGTCAGCTCACGGACACAATGGCCAAGAGAAACAC
TGTGATCGGAACGCCCTTCTGGATGGCCCCCGAGGTGATTGAGGAGATTG
GCTACGACTGTGTGGCAGACATATGGTCATTGGGCATCACCGCCTTGGAA
ATGGCCGAGGGAAAGCCCCCATACGGTGAGATCCATCCCATGCGAGCCAT
CTTTATGATTCCGCAGAAGCCACCACCATCGTTCCGGGAACCGGATCGCT
GGAGCACAGAGTTCATTGACTTCGTGAGCAAGTGCCTGGTAAAGGAGCCA
GACGACCGGGCNACGGCCACTGAACTGCTGGAGCACGAGTTCATA
BS07065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11228-PA | 2010 | hpo-RA | 1..879 | 17..895 | 4376 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hpo-RB | 2804 | CG11228-RB | 109..987 | 17..895 | 4384 | 99.9 | Plus |
| hpo-RA | 2503 | CG11228-RA | 109..987 | 17..895 | 4384 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19495870..19496748 | 895..17 | 4384 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:52:23 has no hits.
BS07065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:56 Download gff for
BS07065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:51 Download gff for
BS07065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11228-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:09 Download gff for
BS07065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 104..986 | 8..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:07:30 Download gff for
BS07065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 104..986 | 8..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:07:30 Download gff for
BS07065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19495871..19496753 | 8..894 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:09 Download gff for
BS07065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15383376..15384258 | 8..894 | 99 | | Minus |
BS07065.complete Sequence
2042 bp assembled on 2008-01-02
GenBank Submission: FJ635713
> BS07065.complete
GAAGTTATCAGTCGACATGTCTGAGCCAGAGGTGACCAGCGTTGTAGATA
TGAAATCGCCCAACATATCCTCCTCCTGCTCCTTCTTCAAGCTGAAGAAG
CTGTCGGAGGAGTCGCTTCTGCAGCCGCCGGAAAAGGTCTTCGACATTAT
GTACAAGCTGGGCGAGGGCAGCTATGGATCAGTCTACAAGGCAGTGCACA
AGGAAAGCAGCTCCATTGTGGCCATCAAGCTGGTGCCGGTGGAGTCCGAC
CTGCACGAGATTATTAAGGAGATATCCATTATGCAACAATGCGACTCGCC
GTATGTGGTGCGCTATTACGGCTCCTACTTCAAGCAGTATGACCTGTGGA
TCTGCATGGAGTACTGTGGCGCCGGCAGCGTCTCCGACATTATGCGTCTG
CGCAAAAAGACGCTGACGGAGGACGAGATAGCCACTATTCTGTCGGACAC
TCTGCAGGGCTTGGTCTATCTGCATCTGCGTCGCAAGATCCATCGCGACA
TCAAGGCGGCCAACATCCTGCTCAATACCGAAGGCTATGCTAAGTTGGCC
GATTTCGGAGTCGCTGGTCAGCTCACGGACACAATGGCCAAGAGAAACAC
TGTGATCGGAACGCCCTTCTGGATGGCCCCCGAGGTGATTGAGGAGATTG
GCTACGACTGTGTGGCAGACATATGGTCATTGGGCATCACCGCCTTGGAA
ATGGCCGAGGGAAAGCCCCCATACGGTGAGATCCATCCCATGCGAGCCAT
CTTTATGATTCCGCAGAAGCCACCACCATCGTTCCGGGAACCGGATCGCT
GGAGCACAGAGTTCATTGACTTCGTGAGCAAGTGCCTGGTAAAGGAGCCA
GACGACCGGGCAACGGCCACTGAACTGCTGGAGCACGAGTTCATACGCAA
CGCCAAGCACCGATCGATCCTAAAGCCTATGCTTGAGGAGACCTGTGCCA
TTCGCGAGCAGCAACGCGCCAATCGCAGTTTTGGGGGCGTGTTGGCTGCT
AGTCAGGCGAAGAGCTTGGCAACCCAGGAAAACGGAATGCAACAACACAT
CACGGACAACGCGTTTATGGAGGATCCAGGTACTCTGGTGCCGGAGAAGT
TCGGTGAATACCAACAGAGCTCAGCCTCAGATGCCACCATGATAGCGCAT
GCAGAGCAAGGTGTGGATGAGGGCACTTTGGGGCCGGGTGGACTAAGGAA
CCTGTCCAAGGCAGCTGCTCCTGCAGCGGCCTCTTCGGCAGCATCTCCTC
TGGACATGCCGGCAGTTGACAGCGGCACAATGGTGGAGCTGGAGTCGAAC
TTGGGCACTATGGTAATCAACTCCGATTCGGACGACTCCACAACGGCCAA
AAACAACGACGACCAGAAGCCGCGAAACCGCTACAGGCCGCAGTTCCTGG
AGCACTTCGATCGCAAAAATGCGGGAGATGGCCGTGGCGATGAAAAACCC
ATAGCCACAGAGTATTCTCCGGCAGCAGCGGAGCAGCAACAACAACAACA
ACAGCAGCAGCAACAACAACAGCAGGATGAACAGCATCTGGCAAGCGGGG
CCAACGATTTGAACAACTGGGAGCACAACATGGAAATGCAGTTCCAGCAG
ATCTCCGCCATTAATCAGTATGGTCTGCAGCAGCACCAGCAGCAGCAGCA
AGTTCTGATGGCTTATCCCCTGATGAACGAACAACTCATCGCGCTCAACA
ATCAACCGAATCTGCTGCTCAGCAACGCTGCGCCAATGGGACAGCAGGGA
ATACCGGCAGCGGCTCCAGCTCAACCGCCGCCCGCATATCAGAATCAGCA
TATGCATACGCAATCGCACGCCTATGTTGAGGGTGAGTTTGAGTTCCTCA
AGTTCCTTACCTTCGACGATCTGAACCAGCGGCTGTGCAACATCGATCAC
GAAATGGAGCTGGAGATCGAACAGCTAAACAAGAAATACAATGCCAAGCG
GCAGCCAATTGTTGACGCCATGAATGCAAAGCGCAAACGCCAGCAGAACA
TCAATAATAATCTGATTAAGATATAGAAGCTTTCTAGACCAT
BS07065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hpo-RB | 2010 | CG11228-PB | 1..2010 | 17..2026 | 10050 | 100 | Plus |
| hpo-RA | 2010 | CG11228-PA | 1..2010 | 17..2026 | 10050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hpo-RB | 2804 | CG11228-RB | 109..2118 | 17..2026 | 10050 | 100 | Plus |
| hpo-RA | 2503 | CG11228-RA | 109..2118 | 17..2026 | 10050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19495460..19496748 | 1305..17 | 6445 | 100 | Minus |
| 2R | 25286936 | 2R | 19494682..19495404 | 2026..1304 | 3615 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| diver2 | 4917 | diver2 DIVER2 4917bp | 4015..4057 | 1852..1894 | 116 | 74.4 | Plus |
BS07065.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:41 Download gff for
BS07065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 1..2010 | 17..2026 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:00 Download gff for
BS07065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 120..2129 | 17..2026 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:31 Download gff for
BS07065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 109..2118 | 17..2026 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:41 Download gff for
BS07065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 115..2129 | 8..2026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:10 Download gff for
BS07065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hpo-RA | 109..2118 | 17..2026 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:10 Download gff for
BS07065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19494682..19495403 | 1305..2026 | 100 | <- | Minus |
| 2R | 19495461..19496748 | 17..1304 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:31 Download gff for
BS07065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15382187..15382908 | 1305..2026 | 100 | <- | Minus |
| arm_2R | 15382966..15384253 | 17..1304 | 100 | | Minus |
BS07065.pep Sequence
Translation from 16 to 2025
> BS07065.pep
MSEPEVTSVVDMKSPNISSSCSFFKLKKLSEESLLQPPEKVFDIMYKLGE
GSYGSVYKAVHKESSSIVAIKLVPVESDLHEIIKEISIMQQCDSPYVVRY
YGSYFKQYDLWICMEYCGAGSVSDIMRLRKKTLTEDEIATILSDTLQGLV
YLHLRRKIHRDIKAANILLNTEGYAKLADFGVAGQLTDTMAKRNTVIGTP
FWMAPEVIEEIGYDCVADIWSLGITALEMAEGKPPYGEIHPMRAIFMIPQ
KPPPSFREPDRWSTEFIDFVSKCLVKEPDDRATATELLEHEFIRNAKHRS
ILKPMLEETCAIREQQRANRSFGGVLAASQAKSLATQENGMQQHITDNAF
MEDPGTLVPEKFGEYQQSSASDATMIAHAEQGVDEGTLGPGGLRNLSKAA
APAAASSAASPLDMPAVDSGTMVELESNLGTMVINSDSDDSTTAKNNDDQ
KPRNRYRPQFLEHFDRKNAGDGRGDEKPIATEYSPAAAEQQQQQQQQQQQ
QQQDEQHLASGANDLNNWEHNMEMQFQQISAINQYGLQQHQQQQQVLMAY
PLMNEQLIALNNQPNLLLSNAAPMGQQGIPAAAPAQPPPAYQNQHMHTQS
HAYVEGEFEFLKFLTFDDLNQRLCNIDHEMELEIEQLNKKYNAKRQPIVD
AMNAKRKRQQNINNNLIKI*
BS07065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hpo-PB | 669 | CG11228-PB | 1..669 | 1..669 | 3474 | 100 | Plus |
| hpo-PA | 669 | CG11228-PA | 1..669 | 1..669 | 3474 | 100 | Plus |
| GckIII-PA | 642 | CG5169-PA | 9..549 | 38..543 | 740 | 34.3 | Plus |
| hppy-PE | 934 | CG7097-PE | 1..426 | 17..420 | 644 | 36.3 | Plus |
| hppy-PA | 1218 | CG7097-PA | 1..482 | 17..507 | 642 | 32.6 | Plus |
