Clone BS07066 Report

Search the DGRC for BS07066

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG5687-RA
Protein status:BS07066.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07066.3prime Sequence

901 bp (808 high quality bases) assembled on 2006-01-06

> BS07066.3prime
ATGGTCTAGAAAGCTTCTATTCGTCGTCAATGCGAATGGCATGGTTCACA
TGGCCCTCGTCACTTGTGAGCTCTCGCGGATCGCCAATCACCGTCGTGGT
GGTGTACTGCACCTGGGAGTCGCTCTTGAAGATCTCCTCCGACACGGCGG
GATTGTCGATGTCCTTGCCGGTGATCTTCAGCACATTGCGTCGCTGGATA
AAGTCAATGATCAGCGAAATGAACCAGCCCAGGAAAACGGTGAGTAGGCA
GCCGATCATGCTGTACCACATGTAGCTCAGCCGGAAAATGGGCCAAGATG
TGAATCCCCCCTCCTCAATGACTTCCAAAGGTTCTGTTAGCAAGCTGCCA
ATGATGTTCGTCATGTTCACATGGCAGTCGCATTTGTCGATGGATGTGGG
CAATGCGGGCTGCTCCACGCTCACAATTTGGGCAACCACGCCCACAAATA
TGACCAGGGCCAGGGACAAGAGTCCTCCGTAGAAGGCGCCCTTGGTATTG
GCCTGTTTGCAGGCGATTCCCAGCACGAAGAGACCGAGGGTGACACCACC
AATCAGTCCATTGAGGGTAAGCGTGGCCTGCAGAACTCCTCCCAGGTGCT
CCACGATGAAGACCAAGCCGAAGGAGGCAATGCCAAAGCCCAGGGACATC
CACTTGGCATAGGTGGCTCCCTTCTCCGGAGAGATTTTGATGTTCATGCC
ATTGACCAGCAGATCTTCGCAGGTCACAGCGGACAGGGAGTTCAAGGCAG
AGGCCACGGTGCCCAAACTGGCAGCAAAGATGCCAGCCACAAAGATTCCC
GCCACGGAGCTAATATGCTCGTAGGTATTAATCACGTAGTAAGGCAACAA
CTGATCCGTGGCTGAAATGCGTCCAGCAGTCAAGGGATCGCAGTCCGCAT
A

BS07066.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5687-PA 2052 CG5687-RA 1168..2052 901..17 4400 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5687-RB 3115 CG5687-RB 1932..2818 901..15 4420 99.9 Minus
CG5687-RA 2752 CG5687-RA 1569..2455 901..15 4420 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1934272..1934734 300..762 2315 100 Plus
3L 28110227 3L 1933930..1934214 15..299 1425 100 Plus
3L 28110227 3L 1934800..1934939 762..901 685 99.3 Plus
Blast to na_te.dros performed on 2015-02-12 04:00:01 has no hits.

BS07066.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:58 Download gff for BS07066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-PA 1169..2052 17..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:53 Download gff for BS07066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-PA 1169..2052 17..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:58:58 Download gff for BS07066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 1570..2457 12..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:26 Download gff for BS07066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 1570..2457 12..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:26 Download gff for BS07066.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1933928..1934214 12..299 99 <- Plus
3L 1934272..1934733 300..761 100 <- Plus
3L 1934800..1934938 762..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:58:58 Download gff for BS07066.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1933928..1934214 12..299 99 <- Plus
arm_3L 1934272..1934733 300..761 100 <- Plus
arm_3L 1934800..1934938 762..900 99   Plus

BS07066.5prime Sequence

854 bp (842 high quality bases) assembled on 2006-01-06

> BS07066.5prime
GAAGTTATCAGTCGACATGTTCGCCACCCAGGACACCATTCTGAAGTTGC
TGACCCTGTGCGCCCTGGCACATTCTATAACCGCATTGGCCCTGCAGGAA
CGGTCTCCGACTCCAGGAGGATCTGCTCCCTTGGATTCCAGCCACAAGTA
CTTGATAGTGCGCGGTGAGTCGCCCAGTGAATCCCAGGAGCATGTGGAGT
TCGATAATGCCGCCACCCTGCTCCTGAGAGCCTTCAAGAATCAACAGATT
CCCGCATCCGCGGAGCTGGAGGAATGCAGTGCGCCCAGTCACAAGGCCAC
CTTCTCGGGCTACGACTACGTGATTCTGCTGGGCATGCTGGTCATCTCGC
TGGGCATCGGCATCTTCTATGGCTTCTTCCAGAAGGGCGGCAGCTCGTCC
AACGAGTTCCTGCTGGGCTCCGAGATGAGCATCTTCCCGGTGACACTCAG
TCTCACGACCAGCTTCATCACGGCCATCGAACTGCTGGGAAATCCATCCG
AGATGTACTTCCAGGGCACCCAGTTTGTGCTCATCGTAATACCCATGGTG
ATTGTCATTCCGGTTGCTGTGAAGATCTTCTATCCCATTTACTTTAAAAT
GGAGCTCACCAGCTGCTATGAGTATCTGGGCATTCGGTTTGGCAAGGAGA
TCAGGATTCTGGGTGCAGTGCTCTATGTCATTCAGATGTGCTTCTACACG
GCTGTGGCAGTCCTGGCACCGGCAATTGCTCTGTCTAAGGCCACGGGACT
GGACACCAAAATCGCCGTGGTCCTGATCTATGTGGTCTGCGTTTTCTACT
CCTCACAGGGAGGCATGAAGGCTGTAGTCATTGCCGACTCCTTCCANGCT
GCTG

BS07066.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5687-PA 2052 CG5687-RA 1..838 17..854 4171 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5687-RB 3115 CG5687-RB 765..1602 17..854 4179 99.9 Plus
CG5687-RA 2752 CG5687-RA 402..1239 17..854 4179 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1935612..1936280 685..17 3345 100 Minus
3L 28110227 3L 1935389..1935554 846..681 830 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:52:09 has no hits.

BS07066.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:59 Download gff for BS07066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-PA 1..838 17..854 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:54 Download gff for BS07066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-PA 1..838 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:07 Download gff for BS07066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 398..1239 9..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:29 Download gff for BS07066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 398..1239 9..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:29 Download gff for BS07066.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1935383..1935549 686..854 97 <- Minus
3L 1935612..1936284 9..685 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:07 Download gff for BS07066.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1935383..1935549 686..854 97 <- Minus
arm_3L 1935612..1936284 9..685 99   Minus

BS07066.complete Sequence

2084 bp assembled on 2008-01-02

GenBank Submission: FJ635714

> BS07066.complete
GAAGTTATCAGTCGACATGTTCGCCACCCAGGACACCATTCTGAAGTTGC
TGACCCTGTGCGCCCTGGCACATTCTATAACCGCATTGGCCCTGCAGGAA
CGGTCTCCGACTCCAGGAGGATCTGCTCCCTTGGATTCCAGCCACAAGTA
CTTGATAGTGCGCGGTGAGTCGCCCAGTGAATCCCAGGAGCATGTGGAGT
TCGATAATGCCGCCACCCTGCTCCTGAGAGCCTTCAAGAATCAACAGATT
CCCGCATCCGCGGAGCTGGAGGAATGCAGTGCGCCCAGTCACAAGGCCAC
CTTCTCGGGCTACGACTACGTGATTCTGCTGGGCATGCTGGTCATCTCGC
TGGGCATCGGCATCTTCTATGGCTTCTTCCAGAAGGGCGGCAGCTCGTCC
AACGAGTTCCTGCTGGGCTCCGAGATGAGCATCTTCCCGGTGACACTCAG
TCTCACGACCAGCTTCATCACGGCCATCGAACTGCTGGGAAATCCATCCG
AGATGTACTTCCAGGGCACCCAGTTTGTGCTCATCGTAATACCCATGGTG
ATTGTCATTCCGGTTGCTGTGAAGATCTTCTATCCCATTTACTTTAAAAT
GGAGCTCACCAGCTGCTATGAGTATCTGGGCATTCGGTTTGGCAAGGAGA
TCAGGATTCTGGGTGCAGTGCTCTATGTCATTCAGATGTGCTTCTACACG
GCTGTGGCAGTCCTGGCACCGGCAATTGCTCTGTCTAAGGCCACGGGACT
GGACACCAAAATCGCCGTGGTCCTGATCTATGTGGTCTGCGTTTTCTACT
CCTCACAGGGAGGCATGAAGGCTGTAGTCATTGCCGACTCCTTCCAGGCT
GCTGTCCTGGCTGTATCCTTGGTACTGATCGTGGGCTTGGGCTGCTTCTA
CAGTGGCAATCCCATCCAGGTCTTTCAGACTGCTTCCGATCACAATCGCT
TGGAGTTCTTCAACATGGATCCCGATCCCACAACACGTCACACCGTCTGG
TCGGTGGTCATTGGTGGCTTTTTCTACTGGACCTCGCTGTTCTGCACCAA
CCAGGCGTCCGTTCAGAAATGCATGTCCTTGAAGTCCTTGAGGCTAGCCA
AGATTGCTCTGGGCTTTGCCATTATCGGCTTAATTGTGGTCTTCCTGCTG
AACTTCTACACGGGTCTGATGGTCTTCACCCACTATGCGGACTGCGATCC
CTTGACTGCTGGACGCATTTCAGCCACGGATCAGTTGTTGCCCTACTACG
TGATTAATACCTACGAGCATATTAGCTCCGTGGCGGGAATCTTTGTGGCT
GGCATCTTTGCTGCCAGTTTGGGCACCGTGGCCTCTGCCTTGAACTCCCT
GTCCGCTGTGACCTGCGAAGATCTGCTGGTCAATGGCATGAACATCAAAA
TCTCTCCGGAGAAGGGAGCCACCTATGCCAAGTGGATGTCCCTGGGCTTT
GGCATTGCCTCCTTCGGCTTGGTCTTCATCGTGGAGCACCTGGGAGGAGT
TCTGCAGGCCACGCTTACCCTCAATGGACTGATTGGTGGTGTCACCCTCG
GTCTCTTCGTGCTGGGAATCGCCTGCAAACAGGCCAATACCAAGGGCGCC
TTCTACGGAGGACTCTTGTCCCTGGCCCTGGTCATATTTGTGGGCGTGGT
TGCCCAAATTGTGAGCGTGGAGCAGCCCGCATTGCCCACATCCATCGACA
AATGCGACTGCCATGTGAACATGACGAACATCATTGGCAGCTTGCTAACA
GAACCTTTGGAAGTCATTGAGGAGGGGGGATTCACATCTTGGCCCATTTT
CCGGCTGAGCTACATGTGGTACAGCATGATCGGCTGCCTACTCACCGTTT
TCCTGGGCTGGTTCATTTCGCTGATCATTGACTTTATCCAGCGACGCAAT
GTGCTGAAGATCACCGGCAAGGACATCGACAATCCCGCCGTGTCGGAGGA
GATCTTCAAGAGCGACTCCCAGGTGCAGTACACCACCACGACGGTGATTG
GCGATCCGCGAGAGCTCACAAGTGACGAGGGCCATGTGAACCATGCCATT
CGCATTGACGACGAATAGAAGCTTTCTAGACCAT

BS07066.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5687-RB 2052 CG5687-PB 1..2052 17..2068 10260 100 Plus
CG5687-RA 2052 CG5687-PA 1..2052 17..2068 10260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5687-RB 3115 CG5687-RB 765..2818 17..2070 10270 100 Plus
CG5687-RA 2752 CG5687-RA 402..2455 17..2070 10270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1935612..1936280 685..17 3345 100 Minus
3L 28110227 3L 1934272..1934734 1785..1323 2315 100 Minus
3L 28110227 3L 1934800..1935167 1323..956 1810 99.5 Minus
3L 28110227 3L 1933930..1934214 2070..1786 1425 100 Minus
3L 28110227 3L 1935387..1935554 848..681 840 100 Minus
3L 28110227 3L 1935214..1935338 963..839 595 98.4 Minus
Blast to na_te.dros performed on 2014-11-28 00:18:19 has no hits.

BS07066.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:44 Download gff for BS07066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 1..2052 17..2068 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:46 Download gff for BS07066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 407..2453 22..2068 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:36 Download gff for BS07066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 407..2453 22..2068 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:44 Download gff for BS07066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 398..2457 9..2073 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:02 Download gff for BS07066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5687-RA 407..2453 22..2068 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:02 Download gff for BS07066.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1934800..1935159 964..1323 100 <- Minus
3L 1935214..1935329 848..963 100 <- Minus
3L 1935388..1935549 686..847 100 <- Minus
3L 1933932..1934214 1786..2068 100 <- Minus
3L 1934272..1934733 1324..1785 100 <- Minus
3L 1935612..1936275 22..685 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:36 Download gff for BS07066.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1933932..1934214 1786..2068 100 <- Minus
arm_3L 1934272..1934733 1324..1785 100 <- Minus
arm_3L 1934800..1935159 964..1323 100 <- Minus
arm_3L 1935214..1935329 848..963 100 <- Minus
arm_3L 1935388..1935549 686..847 100 <- Minus
arm_3L 1935612..1936275 22..685 100   Minus

BS07066.pep Sequence

Translation from 16 to 2067

> BS07066.pep
MFATQDTILKLLTLCALAHSITALALQERSPTPGGSAPLDSSHKYLIVRG
ESPSESQEHVEFDNAATLLLRAFKNQQIPASAELEECSAPSHKATFSGYD
YVILLGMLVISLGIGIFYGFFQKGGSSSNEFLLGSEMSIFPVTLSLTTSF
ITAIELLGNPSEMYFQGTQFVLIVIPMVIVIPVAVKIFYPIYFKMELTSC
YEYLGIRFGKEIRILGAVLYVIQMCFYTAVAVLAPAIALSKATGLDTKIA
VVLIYVVCVFYSSQGGMKAVVIADSFQAAVLAVSLVLIVGLGCFYSGNPI
QVFQTASDHNRLEFFNMDPDPTTRHTVWSVVIGGFFYWTSLFCTNQASVQ
KCMSLKSLRLAKIALGFAIIGLIVVFLLNFYTGLMVFTHYADCDPLTAGR
ISATDQLLPYYVINTYEHISSVAGIFVAGIFAASLGTVASALNSLSAVTC
EDLLVNGMNIKISPEKGATYAKWMSLGFGIASFGLVFIVEHLGGVLQATL
TLNGLIGGVTLGLFVLGIACKQANTKGAFYGGLLSLALVIFVGVVAQIVS
VEQPALPTSIDKCDCHVNMTNIIGSLLTEPLEVIEEGGFTSWPIFRLSYM
WYSMIGCLLTVFLGWFISLIIDFIQRRNVLKITGKDIDNPAVSEEIFKSD
SQVQYTTTTVIGDPRELTSDEGHVNHAIRIDDE*

BS07066.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5687-PB 683 CG5687-PB 1..683 1..683 3472 100 Plus
CG5687-PA 683 CG5687-PA 1..683 1..683 3472 100 Plus
CG32669-PA 604 CG32669-PA 2..553 94..647 925 35.1 Plus
CG33124-PD 588 CG33124-PD 6..544 96..620 901 35.5 Plus
CG10444-PA 587 CG10444-PA 5..532 95..621 884 35.7 Plus