Clone Sequence Records
BS07066.3prime Sequence
901 bp (808 high quality bases) assembled on 2006-01-06
> BS07066.3prime
ATGGTCTAGAAAGCTTCTATTCGTCGTCAATGCGAATGGCATGGTTCACA
TGGCCCTCGTCACTTGTGAGCTCTCGCGGATCGCCAATCACCGTCGTGGT
GGTGTACTGCACCTGGGAGTCGCTCTTGAAGATCTCCTCCGACACGGCGG
GATTGTCGATGTCCTTGCCGGTGATCTTCAGCACATTGCGTCGCTGGATA
AAGTCAATGATCAGCGAAATGAACCAGCCCAGGAAAACGGTGAGTAGGCA
GCCGATCATGCTGTACCACATGTAGCTCAGCCGGAAAATGGGCCAAGATG
TGAATCCCCCCTCCTCAATGACTTCCAAAGGTTCTGTTAGCAAGCTGCCA
ATGATGTTCGTCATGTTCACATGGCAGTCGCATTTGTCGATGGATGTGGG
CAATGCGGGCTGCTCCACGCTCACAATTTGGGCAACCACGCCCACAAATA
TGACCAGGGCCAGGGACAAGAGTCCTCCGTAGAAGGCGCCCTTGGTATTG
GCCTGTTTGCAGGCGATTCCCAGCACGAAGAGACCGAGGGTGACACCACC
AATCAGTCCATTGAGGGTAAGCGTGGCCTGCAGAACTCCTCCCAGGTGCT
CCACGATGAAGACCAAGCCGAAGGAGGCAATGCCAAAGCCCAGGGACATC
CACTTGGCATAGGTGGCTCCCTTCTCCGGAGAGATTTTGATGTTCATGCC
ATTGACCAGCAGATCTTCGCAGGTCACAGCGGACAGGGAGTTCAAGGCAG
AGGCCACGGTGCCCAAACTGGCAGCAAAGATGCCAGCCACAAAGATTCCC
GCCACGGAGCTAATATGCTCGTAGGTATTAATCACGTAGTAAGGCAACAA
CTGATCCGTGGCTGAAATGCGTCCAGCAGTCAAGGGATCGCAGTCCGCAT
A
BS07066.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5687-PA | 2052 | CG5687-RA | 1168..2052 | 901..17 | 4400 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5687-RB | 3115 | CG5687-RB | 1932..2818 | 901..15 | 4420 | 99.9 | Minus |
CG5687-RA | 2752 | CG5687-RA | 1569..2455 | 901..15 | 4420 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1934272..1934734 | 300..762 | 2315 | 100 | Plus |
3L | 28110227 | 3L | 1933930..1934214 | 15..299 | 1425 | 100 | Plus |
3L | 28110227 | 3L | 1934800..1934939 | 762..901 | 685 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:00:01 has no hits.
BS07066.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:58 Download gff for
BS07066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5687-PA | 1169..2052 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:53 Download gff for
BS07066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5687-PA | 1169..2052 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:58:58 Download gff for
BS07066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5687-RA | 1570..2457 | 12..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:26 Download gff for
BS07066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5687-RA | 1570..2457 | 12..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:26 Download gff for
BS07066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1933928..1934214 | 12..299 | 99 | <- | Plus |
3L | 1934272..1934733 | 300..761 | 100 | <- | Plus |
3L | 1934800..1934938 | 762..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:58:58 Download gff for
BS07066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1933928..1934214 | 12..299 | 99 | <- | Plus |
arm_3L | 1934272..1934733 | 300..761 | 100 | <- | Plus |
arm_3L | 1934800..1934938 | 762..900 | 99 | | Plus |
BS07066.5prime Sequence
854 bp (842 high quality bases) assembled on 2006-01-06
> BS07066.5prime
GAAGTTATCAGTCGACATGTTCGCCACCCAGGACACCATTCTGAAGTTGC
TGACCCTGTGCGCCCTGGCACATTCTATAACCGCATTGGCCCTGCAGGAA
CGGTCTCCGACTCCAGGAGGATCTGCTCCCTTGGATTCCAGCCACAAGTA
CTTGATAGTGCGCGGTGAGTCGCCCAGTGAATCCCAGGAGCATGTGGAGT
TCGATAATGCCGCCACCCTGCTCCTGAGAGCCTTCAAGAATCAACAGATT
CCCGCATCCGCGGAGCTGGAGGAATGCAGTGCGCCCAGTCACAAGGCCAC
CTTCTCGGGCTACGACTACGTGATTCTGCTGGGCATGCTGGTCATCTCGC
TGGGCATCGGCATCTTCTATGGCTTCTTCCAGAAGGGCGGCAGCTCGTCC
AACGAGTTCCTGCTGGGCTCCGAGATGAGCATCTTCCCGGTGACACTCAG
TCTCACGACCAGCTTCATCACGGCCATCGAACTGCTGGGAAATCCATCCG
AGATGTACTTCCAGGGCACCCAGTTTGTGCTCATCGTAATACCCATGGTG
ATTGTCATTCCGGTTGCTGTGAAGATCTTCTATCCCATTTACTTTAAAAT
GGAGCTCACCAGCTGCTATGAGTATCTGGGCATTCGGTTTGGCAAGGAGA
TCAGGATTCTGGGTGCAGTGCTCTATGTCATTCAGATGTGCTTCTACACG
GCTGTGGCAGTCCTGGCACCGGCAATTGCTCTGTCTAAGGCCACGGGACT
GGACACCAAAATCGCCGTGGTCCTGATCTATGTGGTCTGCGTTTTCTACT
CCTCACAGGGAGGCATGAAGGCTGTAGTCATTGCCGACTCCTTCCANGCT
GCTG
BS07066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5687-PA | 2052 | CG5687-RA | 1..838 | 17..854 | 4171 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5687-RB | 3115 | CG5687-RB | 765..1602 | 17..854 | 4179 | 99.9 | Plus |
CG5687-RA | 2752 | CG5687-RA | 402..1239 | 17..854 | 4179 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1935612..1936280 | 685..17 | 3345 | 100 | Minus |
3L | 28110227 | 3L | 1935389..1935554 | 846..681 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:52:09 has no hits.
BS07066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:00:59 Download gff for
BS07066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5687-PA | 1..838 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:54 Download gff for
BS07066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5687-PA | 1..838 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:07 Download gff for
BS07066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5687-RA | 398..1239 | 9..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:29 Download gff for
BS07066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5687-RA | 398..1239 | 9..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:29 Download gff for
BS07066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1935383..1935549 | 686..854 | 97 | <- | Minus |
3L | 1935612..1936284 | 9..685 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:07 Download gff for
BS07066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1935383..1935549 | 686..854 | 97 | <- | Minus |
arm_3L | 1935612..1936284 | 9..685 | 99 | | Minus |
BS07066.complete Sequence
2084 bp assembled on 2008-01-02
GenBank Submission: FJ635714
> BS07066.complete
GAAGTTATCAGTCGACATGTTCGCCACCCAGGACACCATTCTGAAGTTGC
TGACCCTGTGCGCCCTGGCACATTCTATAACCGCATTGGCCCTGCAGGAA
CGGTCTCCGACTCCAGGAGGATCTGCTCCCTTGGATTCCAGCCACAAGTA
CTTGATAGTGCGCGGTGAGTCGCCCAGTGAATCCCAGGAGCATGTGGAGT
TCGATAATGCCGCCACCCTGCTCCTGAGAGCCTTCAAGAATCAACAGATT
CCCGCATCCGCGGAGCTGGAGGAATGCAGTGCGCCCAGTCACAAGGCCAC
CTTCTCGGGCTACGACTACGTGATTCTGCTGGGCATGCTGGTCATCTCGC
TGGGCATCGGCATCTTCTATGGCTTCTTCCAGAAGGGCGGCAGCTCGTCC
AACGAGTTCCTGCTGGGCTCCGAGATGAGCATCTTCCCGGTGACACTCAG
TCTCACGACCAGCTTCATCACGGCCATCGAACTGCTGGGAAATCCATCCG
AGATGTACTTCCAGGGCACCCAGTTTGTGCTCATCGTAATACCCATGGTG
ATTGTCATTCCGGTTGCTGTGAAGATCTTCTATCCCATTTACTTTAAAAT
GGAGCTCACCAGCTGCTATGAGTATCTGGGCATTCGGTTTGGCAAGGAGA
TCAGGATTCTGGGTGCAGTGCTCTATGTCATTCAGATGTGCTTCTACACG
GCTGTGGCAGTCCTGGCACCGGCAATTGCTCTGTCTAAGGCCACGGGACT
GGACACCAAAATCGCCGTGGTCCTGATCTATGTGGTCTGCGTTTTCTACT
CCTCACAGGGAGGCATGAAGGCTGTAGTCATTGCCGACTCCTTCCAGGCT
GCTGTCCTGGCTGTATCCTTGGTACTGATCGTGGGCTTGGGCTGCTTCTA
CAGTGGCAATCCCATCCAGGTCTTTCAGACTGCTTCCGATCACAATCGCT
TGGAGTTCTTCAACATGGATCCCGATCCCACAACACGTCACACCGTCTGG
TCGGTGGTCATTGGTGGCTTTTTCTACTGGACCTCGCTGTTCTGCACCAA
CCAGGCGTCCGTTCAGAAATGCATGTCCTTGAAGTCCTTGAGGCTAGCCA
AGATTGCTCTGGGCTTTGCCATTATCGGCTTAATTGTGGTCTTCCTGCTG
AACTTCTACACGGGTCTGATGGTCTTCACCCACTATGCGGACTGCGATCC
CTTGACTGCTGGACGCATTTCAGCCACGGATCAGTTGTTGCCCTACTACG
TGATTAATACCTACGAGCATATTAGCTCCGTGGCGGGAATCTTTGTGGCT
GGCATCTTTGCTGCCAGTTTGGGCACCGTGGCCTCTGCCTTGAACTCCCT
GTCCGCTGTGACCTGCGAAGATCTGCTGGTCAATGGCATGAACATCAAAA
TCTCTCCGGAGAAGGGAGCCACCTATGCCAAGTGGATGTCCCTGGGCTTT
GGCATTGCCTCCTTCGGCTTGGTCTTCATCGTGGAGCACCTGGGAGGAGT
TCTGCAGGCCACGCTTACCCTCAATGGACTGATTGGTGGTGTCACCCTCG
GTCTCTTCGTGCTGGGAATCGCCTGCAAACAGGCCAATACCAAGGGCGCC
TTCTACGGAGGACTCTTGTCCCTGGCCCTGGTCATATTTGTGGGCGTGGT
TGCCCAAATTGTGAGCGTGGAGCAGCCCGCATTGCCCACATCCATCGACA
AATGCGACTGCCATGTGAACATGACGAACATCATTGGCAGCTTGCTAACA
GAACCTTTGGAAGTCATTGAGGAGGGGGGATTCACATCTTGGCCCATTTT
CCGGCTGAGCTACATGTGGTACAGCATGATCGGCTGCCTACTCACCGTTT
TCCTGGGCTGGTTCATTTCGCTGATCATTGACTTTATCCAGCGACGCAAT
GTGCTGAAGATCACCGGCAAGGACATCGACAATCCCGCCGTGTCGGAGGA
GATCTTCAAGAGCGACTCCCAGGTGCAGTACACCACCACGACGGTGATTG
GCGATCCGCGAGAGCTCACAAGTGACGAGGGCCATGTGAACCATGCCATT
CGCATTGACGACGAATAGAAGCTTTCTAGACCAT
BS07066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5687-RB | 2052 | CG5687-PB | 1..2052 | 17..2068 | 10260 | 100 | Plus |
CG5687-RA | 2052 | CG5687-PA | 1..2052 | 17..2068 | 10260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5687-RB | 3115 | CG5687-RB | 765..2818 | 17..2070 | 10270 | 100 | Plus |
CG5687-RA | 2752 | CG5687-RA | 402..2455 | 17..2070 | 10270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1935612..1936280 | 685..17 | 3345 | 100 | Minus |
3L | 28110227 | 3L | 1934272..1934734 | 1785..1323 | 2315 | 100 | Minus |
3L | 28110227 | 3L | 1934800..1935167 | 1323..956 | 1810 | 99.5 | Minus |
3L | 28110227 | 3L | 1933930..1934214 | 2070..1786 | 1425 | 100 | Minus |
3L | 28110227 | 3L | 1935387..1935554 | 848..681 | 840 | 100 | Minus |
3L | 28110227 | 3L | 1935214..1935338 | 963..839 | 595 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:18:19 has no hits.
BS07066.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:44 Download gff for
BS07066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5687-RA | 1..2052 | 17..2068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:46 Download gff for
BS07066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5687-RA | 407..2453 | 22..2068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:36 Download gff for
BS07066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5687-RA | 407..2453 | 22..2068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:44 Download gff for
BS07066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5687-RA | 398..2457 | 9..2073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:02 Download gff for
BS07066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5687-RA | 407..2453 | 22..2068 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:02 Download gff for
BS07066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1934800..1935159 | 964..1323 | 100 | <- | Minus |
3L | 1935214..1935329 | 848..963 | 100 | <- | Minus |
3L | 1935388..1935549 | 686..847 | 100 | <- | Minus |
3L | 1933932..1934214 | 1786..2068 | 100 | <- | Minus |
3L | 1934272..1934733 | 1324..1785 | 100 | <- | Minus |
3L | 1935612..1936275 | 22..685 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:36 Download gff for
BS07066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1933932..1934214 | 1786..2068 | 100 | <- | Minus |
arm_3L | 1934272..1934733 | 1324..1785 | 100 | <- | Minus |
arm_3L | 1934800..1935159 | 964..1323 | 100 | <- | Minus |
arm_3L | 1935214..1935329 | 848..963 | 100 | <- | Minus |
arm_3L | 1935388..1935549 | 686..847 | 100 | <- | Minus |
arm_3L | 1935612..1936275 | 22..685 | 100 | | Minus |
BS07066.pep Sequence
Translation from 16 to 2067
> BS07066.pep
MFATQDTILKLLTLCALAHSITALALQERSPTPGGSAPLDSSHKYLIVRG
ESPSESQEHVEFDNAATLLLRAFKNQQIPASAELEECSAPSHKATFSGYD
YVILLGMLVISLGIGIFYGFFQKGGSSSNEFLLGSEMSIFPVTLSLTTSF
ITAIELLGNPSEMYFQGTQFVLIVIPMVIVIPVAVKIFYPIYFKMELTSC
YEYLGIRFGKEIRILGAVLYVIQMCFYTAVAVLAPAIALSKATGLDTKIA
VVLIYVVCVFYSSQGGMKAVVIADSFQAAVLAVSLVLIVGLGCFYSGNPI
QVFQTASDHNRLEFFNMDPDPTTRHTVWSVVIGGFFYWTSLFCTNQASVQ
KCMSLKSLRLAKIALGFAIIGLIVVFLLNFYTGLMVFTHYADCDPLTAGR
ISATDQLLPYYVINTYEHISSVAGIFVAGIFAASLGTVASALNSLSAVTC
EDLLVNGMNIKISPEKGATYAKWMSLGFGIASFGLVFIVEHLGGVLQATL
TLNGLIGGVTLGLFVLGIACKQANTKGAFYGGLLSLALVIFVGVVAQIVS
VEQPALPTSIDKCDCHVNMTNIIGSLLTEPLEVIEEGGFTSWPIFRLSYM
WYSMIGCLLTVFLGWFISLIIDFIQRRNVLKITGKDIDNPAVSEEIFKSD
SQVQYTTTTVIGDPRELTSDEGHVNHAIRIDDE*
BS07066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5687-PB | 683 | CG5687-PB | 1..683 | 1..683 | 3472 | 100 | Plus |
CG5687-PA | 683 | CG5687-PA | 1..683 | 1..683 | 3472 | 100 | Plus |
CG32669-PA | 604 | CG32669-PA | 2..553 | 94..647 | 925 | 35.1 | Plus |
CG33124-PD | 588 | CG33124-PD | 6..544 | 96..620 | 901 | 35.5 | Plus |
CG10444-PA | 587 | CG10444-PA | 5..532 | 95..621 | 884 | 35.7 | Plus |