Clone Sequence Records
BS07067.3prime Sequence
821 bp (820 high quality bases) assembled on 2006-01-06
> BS07067.3prime
ATGGTCTAGAAAGCTTCTAGAGCTCCAAGGCGCCACGATTTAACAGCCAG
GGCATGACGGCTTGGATGTGTTTGCGGTAACGGGGACTGTTGTAGAGCTG
CATCTGGAAGTCACTGCCACCTATGAAGTTTTCCAAACTAGCACTGTCCG
TGGGATCCAAAAGAACAGCAGACATTACACCAGTAGCGACCGTGTAGCCG
AAGTAGCCGTATTTGAACAGCGCCAAATGAATATCTCGCAGACTAGGAAT
GGGTTTCGAGTATTTCAAAATCTTCAGGTGCTCCACCAGATTATCGTGAT
AAATTTTAATATAATAATCGAATTTGGCCAGTTTATCCTCCAGCTTTGTG
GATGAGAGCAAGAAGTAGAGCAGATCCTGTGCCACGGTTCCGTACTTGGG
CAGCTGGTAGTCGACCAAATACACCTCCTTGATCTTTCCAAAGGCATCAT
ACTGAAACATTATATTGTTTGACCACGAATCGCCGTGGTTCAGAACGTTG
AACTCCGTTGGCTCGACCTTGGCGAACTCAAAAATCTTATCTATAGCAAC
AGGCTGTAACGCTTTGACTTTGTCTAAATAAGCCTCATGACCTTCGTAGG
TGGCGCAGCTTTTAACGAAATTCGCGCCCATTCCTTTTATCATTTCAGAC
ATAACGGGCCTGCTTTCCTCCTTAAAGAAGCCTTGAAGTAGGATTTTGGG
ATAGGGTCCTTTGGTGGCCACTCGTACAGCTGATGCAGCATGCCATTGGG
ATAGCTTTCGCAGAACCCTCTCCGTGTGCTCTTGATCCAGCCCTTCGAGG
CGGTTGGCATTCTTGAACCCT
BS07067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10562-PA | 1218 | CG10562-RA | 414..1218 | 821..17 | 4025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:30:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10562-RA | 1527 | CG10562-RA | 493..1297 | 821..17 | 4025 | 100 | Minus |
CHKov1-RE | 1463 | CG10618-RE | 495..1190 | 821..126 | 865 | 75.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:30:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25321522..25321889 | 198..565 | 1840 | 100 | Plus |
3R | 32079331 | 3R | 25321958..25322213 | 566..821 | 1280 | 100 | Plus |
3R | 32079331 | 3R | 25321283..25321465 | 17..199 | 915 | 100 | Plus |
3R | 32079331 | 3R | 25323570..25323880 | 207..517 | 550 | 78.5 | Plus |
3R | 32079331 | 3R | 25323997..25324252 | 566..821 | 335 | 75.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:30:42 has no hits.
BS07067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:00 Download gff for
BS07067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10562-PA | 414..1218 | 17..821 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:56 Download gff for
BS07067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10562-PA | 414..1218 | 17..821 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:43:11 Download gff for
BS07067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10562-RA | 493..1300 | 13..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:51 Download gff for
BS07067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10562-RA | 493..1300 | 13..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:51 Download gff for
BS07067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25321280..25321464 | 13..198 | 98 | <- | Plus |
3R | 25321523..25321889 | 199..565 | 100 | <- | Plus |
3R | 25321958..25322213 | 566..821 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:43:11 Download gff for
BS07067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21147002..21147186 | 13..198 | 98 | <- | Plus |
arm_3R | 21147245..21147611 | 199..565 | 100 | <- | Plus |
arm_3R | 21147680..21147935 | 566..821 | 100 | | Plus |
BS07067.5prime Sequence
925 bp (780 high quality bases) assembled on 2006-01-06
> BS07067.5prime
GAAGTTATCAGTCGACATGGCGTCCAGTAAAATCCCCGATTGGGTAACTG
CAGAAATATTTGAAGATTTGCTTAAGGCAAATGTGGATGGATACTCAAAA
ATTAAGAACTTTAAGGCGGACATTGGATCCGCTGCAGGTGAAAATTATGC
CACCATTATGCTTCGAGTCAAAATCGAAGTTGAGCTGCAGGATGGCAAAT
CGAAATCGGTATCCTACATGGTTAAGTTGCCCCACCAAGTGGAGGCTATT
CAGGAGATGATGAAACGAACCAACATCTTCGAAATCGAGCGTACCATGTA
TAACGAGGTTGTACCTGAACTAGAGGCGCTTTACAAGGCAGTAGGAGTGG
ACATCACATTCGGCGCCAAAAACTATGATCTCAAGAATGCCAAGACAGAC
TACGTGGCCCTGGAGGATTTGGGGTTGAAAGGGTTCAAGAATGCCAACCG
CCTCGAAGGGCTGGATCAAGAGCACACGGAGAGGGTTCTGCGAAAGCTAT
CCCAATGGCATGCTGCATCAGCTGTACGAGTGGCCACCAAAGGACCCTAT
CCCAAAATCCTACTTCAAGGCTTCTTTAAGGAGGAAAGCAGGCCCGTTAT
GTCTGAAATGATAAAAGGAATGGGCGCGAATTTCGTTAAAAGCTGCGCCA
CCTACGAAGGTCATGAGGCTTATTTAGACAAAGTCAAAGCGTTACAGCCT
GTTGCTATAGATAAGATTTTTGAGTTCGCCAAGGTCGAGCCAACGGAGTT
CAACGTTCTGAACCACGGCGATTCGTGGTCAAACAATATAATGTTTCAGT
ATGATGCCTTTGGAAAGATCAAGGANGTGTATTTGGTCGACTACCAGCTG
CCCAAGTACGGAACCGTGGCACAGGATCTGCTCTACTTCTTGCTCTCATC
CACAAAGCTGGAGGATAAACTGGCC
BS07067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10562-PA | 1218 | CG10562-RA | 1..909 | 17..925 | 4526 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10562-RA | 1527 | CG10562-RA | 80..988 | 17..925 | 4534 | 99.9 | Plus |
CHKov1-RE | 1463 | CG10618-RE | 94..980 | 29..915 | 1134 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:19:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25321958..25322452 | 685..191 | 2475 | 100 | Minus |
3R | 32079331 | 3R | 25321650..25321889 | 925..686 | 1189 | 99.6 | Minus |
3R | 32079331 | 3R | 25322504..25322678 | 191..17 | 875 | 100 | Minus |
3R | 32079331 | 3R | 25323997..25324411 | 685..271 | 590 | 76.1 | Minus |
3R | 32079331 | 3R | 25323699..25323880 | 915..734 | 404 | 81.3 | Minus |
3R | 32079331 | 3R | 25329061..25329223 | 191..29 | 245 | 76.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:19:04 has no hits.
BS07067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:01 Download gff for
BS07067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10562-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:57 Download gff for
BS07067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10562-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:58:42 Download gff for
BS07067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10562-RA | 69..988 | 6..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:27:28 Download gff for
BS07067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10562-RA | 69..988 | 6..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:27:28 Download gff for
BS07067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25321650..25321889 | 686..925 | 99 | <- | Minus |
3R | 25321958..25322451 | 192..685 | 100 | <- | Minus |
3R | 25322504..25322689 | 6..191 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:58:42 Download gff for
BS07067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21147372..21147611 | 686..925 | 99 | <- | Minus |
arm_3R | 21147680..21148173 | 192..685 | 100 | <- | Minus |
arm_3R | 21148226..21148411 | 6..191 | 97 | | Minus |
BS07067.complete Sequence
1250 bp (1250 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635715
> BS07067.complete
GAAGTTATCAGTCGACATGGCGTCCAGTAAAATCCCCGATTGGGTAACTG
CAGAAATATTTGAAGATTTGCTTAAGGCAAATGTGGATGGATACTCAAAA
ATTAAGAACTTTAAGGCGGACATTGGATCCGCTGCAGGTGAAAATTATGC
CACCATTATGCTTCGAGTCAAAATCGAAGTTGAGCTGCAGGATGGCAAAT
CGAAATCGGTATCCTACATGGTTAAGTTGCCCCACCAAGTGGAGGCTATT
CAGGAGATGATGAAACGAACCAACATCTTCGAAATCGAGCGTACCATGTA
TAACGAGGTTGTACCTGAACTAGAGGCGCTTTACAAGGCAGTAGGAGTGG
ACATCACATTCGGCGCCAAAAACTATGATCTCAAGAATGCCAAGACAGAC
TACGTGGCCCTGGAGGATTTGGGGTTGAAAGGGTTCAAGAATGCCAACCG
CCTCGAAGGGCTGGATCAAGAGCACACGGAGAGGGTTCTGCGAAAGCTAT
CCCAATGGCATGCTGCATCAGCTGTACGAGTGGCCACCAAAGGACCCTAT
CCCAAAATCCTACTTCAAGGCTTCTTTAAGGAGGAAAGCAGGCCCGTTAT
GTCTGAAATGATAAAAGGAATGGGCGCGAATTTCGTTAAAAGCTGCGCCA
CCTACGAAGGTCATGAGGCTTATTTAGACAAAGTCAAAGCGTTACAGCCT
GTTGCTATAGATAAGATTTTTGAGTTCGCCAAGGTCGAGCCAACGGAGTT
CAACGTTCTGAACCACGGCGATTCGTGGTCAAACAATATAATGTTTCAGT
ATGATGCCTTTGGAAAGATCAAGGAGGTGTATTTGGTCGACTACCAGCTG
CCCAAGTACGGAACCGTGGCACAGGATCTGCTCTACTTCTTGCTCTCATC
CACAAAGCTGGAGGATAAACTGGCCAAATTCGATTATTATATTAAAATTT
ATCACGATAATCTGGTGGAGCACCTGAAGATTTTGAAATACTCGAAACCC
ATTCCTAGTCTGCGAGATATTCATTTGGCGCTGTTCAAATACGGCTACTT
CGGCTACACGGTCGCTACTGGTGTAATGTCTGCTGTTCTTTTGGATCCCA
CGGACAGTGCTAGTTTGGAAAACTTCATAGGTGGCAGTGACTTCCAGATG
CAGCTCTACAACAGTCCCCGTTACCGCAAACACATCCAAGCCGTCATGCC
CTGGCTGTTAAATCGTGGCGCCTTGGAGCTCTAGAAGCTTTCTAGACCAT
BS07067.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10562-RA | 1218 | CG10562-PA | 1..1218 | 17..1234 | 6090 | 100 | Plus |
CHKov1-RE | 1233 | CG10618-PE | 13..1109 | 29..1125 | 1330 | 74.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:57:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10562-RA | 1527 | CG10562-RA | 80..1297 | 17..1234 | 6090 | 100 | Plus |
CHKov1-RE | 1463 | CG10618-RE | 94..1190 | 29..1125 | 1330 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25321958..25322452 | 685..191 | 2475 | 100 | Minus |
3R | 32079331 | 3R | 25321522..25321889 | 1053..686 | 1840 | 100 | Minus |
3R | 32079331 | 3R | 25321283..25321465 | 1234..1052 | 915 | 100 | Minus |
3R | 32079331 | 3R | 25322504..25322678 | 191..17 | 875 | 100 | Minus |
3R | 32079331 | 3R | 25323997..25324411 | 685..271 | 590 | 76.1 | Minus |
3R | 32079331 | 3R | 25323570..25323880 | 1044..734 | 550 | 78.5 | Minus |
3R | 32079331 | 3R | 25329061..25329223 | 191..29 | 245 | 76.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:57:51 has no hits.
BS07067.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:07 Download gff for
BS07067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10562-RA | 1..1218 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:40 Download gff for
BS07067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10562-RA | 63..1294 | 6..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:27 Download gff for
BS07067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10562-RA | 80..1297 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:07 Download gff for
BS07067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10562-RA | 63..1294 | 6..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:38 Download gff for
BS07067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10562-RA | 80..1297 | 17..1234 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:38 Download gff for
BS07067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25321283..25321464 | 1053..1234 | 100 | <- | Minus |
3R | 25321523..25321889 | 686..1052 | 100 | <- | Minus |
3R | 25321958..25322451 | 192..685 | 100 | <- | Minus |
3R | 25322504..25322678 | 17..191 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:27 Download gff for
BS07067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21147005..21147186 | 1053..1234 | 100 | <- | Minus |
arm_3R | 21147245..21147611 | 686..1052 | 100 | <- | Minus |
arm_3R | 21147680..21148173 | 192..685 | 100 | <- | Minus |
arm_3R | 21148226..21148400 | 17..191 | 100 | | Minus |
BS07067.pep Sequence
Translation from 16 to 1233
> BS07067.pep
MASSKIPDWVTAEIFEDLLKANVDGYSKIKNFKADIGSAAGENYATIMLR
VKIEVELQDGKSKSVSYMVKLPHQVEAIQEMMKRTNIFEIERTMYNEVVP
ELEALYKAVGVDITFGAKNYDLKNAKTDYVALEDLGLKGFKNANRLEGLD
QEHTERVLRKLSQWHAASAVRVATKGPYPKILLQGFFKEESRPVMSEMIK
GMGANFVKSCATYEGHEAYLDKVKALQPVAIDKIFEFAKVEPTEFNVLNH
GDSWSNNIMFQYDAFGKIKEVYLVDYQLPKYGTVAQDLLYFLLSSTKLED
KLAKFDYYIKIYHDNLVEHLKILKYSKPIPSLRDIHLALFKYGYFGYTVA
TGVMSAVLLDPTDSASLENFIGGSDFQMQLYNSPRYRKHIQAVMPWLLNR
GALEL*
BS07067.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10562-PA | 405 | CG10562-PA | 1..405 | 1..405 | 2089 | 100 | Plus |
CHKov1-PE | 410 | CG10618-PE | 1..408 | 1..404 | 1670 | 75.2 | Plus |
CG10560-PA | 414 | CG10560-PA | 17..414 | 6..404 | 1027 | 49.9 | Plus |
CG10553-PA | 414 | CG10553-PA | 17..414 | 6..404 | 975 | 47.1 | Plus |
CG10559-PB | 415 | CG10559-PB | 7..414 | 3..404 | 965 | 45.7 | Plus |