Clone BS07067 Report

Search the DGRC for BS07067

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG10562-RA
Protein status:BS07067.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07067.3prime Sequence

821 bp (820 high quality bases) assembled on 2006-01-06

> BS07067.3prime
ATGGTCTAGAAAGCTTCTAGAGCTCCAAGGCGCCACGATTTAACAGCCAG
GGCATGACGGCTTGGATGTGTTTGCGGTAACGGGGACTGTTGTAGAGCTG
CATCTGGAAGTCACTGCCACCTATGAAGTTTTCCAAACTAGCACTGTCCG
TGGGATCCAAAAGAACAGCAGACATTACACCAGTAGCGACCGTGTAGCCG
AAGTAGCCGTATTTGAACAGCGCCAAATGAATATCTCGCAGACTAGGAAT
GGGTTTCGAGTATTTCAAAATCTTCAGGTGCTCCACCAGATTATCGTGAT
AAATTTTAATATAATAATCGAATTTGGCCAGTTTATCCTCCAGCTTTGTG
GATGAGAGCAAGAAGTAGAGCAGATCCTGTGCCACGGTTCCGTACTTGGG
CAGCTGGTAGTCGACCAAATACACCTCCTTGATCTTTCCAAAGGCATCAT
ACTGAAACATTATATTGTTTGACCACGAATCGCCGTGGTTCAGAACGTTG
AACTCCGTTGGCTCGACCTTGGCGAACTCAAAAATCTTATCTATAGCAAC
AGGCTGTAACGCTTTGACTTTGTCTAAATAAGCCTCATGACCTTCGTAGG
TGGCGCAGCTTTTAACGAAATTCGCGCCCATTCCTTTTATCATTTCAGAC
ATAACGGGCCTGCTTTCCTCCTTAAAGAAGCCTTGAAGTAGGATTTTGGG
ATAGGGTCCTTTGGTGGCCACTCGTACAGCTGATGCAGCATGCCATTGGG
ATAGCTTTCGCAGAACCCTCTCCGTGTGCTCTTGATCCAGCCCTTCGAGG
CGGTTGGCATTCTTGAACCCT

BS07067.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10562-PA 1218 CG10562-RA 414..1218 821..17 4025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10562-RA 1527 CG10562-RA 493..1297 821..17 4025 100 Minus
CHKov1-RE 1463 CG10618-RE 495..1190 821..126 865 75.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25321522..25321889 198..565 1840 100 Plus
3R 32079331 3R 25321958..25322213 566..821 1280 100 Plus
3R 32079331 3R 25321283..25321465 17..199 915 100 Plus
3R 32079331 3R 25323570..25323880 207..517 550 78.5 Plus
3R 32079331 3R 25323997..25324252 566..821 335 75.4 Plus
Blast to na_te.dros performed on 2015-02-11 16:30:42 has no hits.

BS07067.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:00 Download gff for BS07067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10562-PA 414..1218 17..821 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:56 Download gff for BS07067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10562-PA 414..1218 17..821 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:43:11 Download gff for BS07067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10562-RA 493..1300 13..821 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:51 Download gff for BS07067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10562-RA 493..1300 13..821 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:51 Download gff for BS07067.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25321280..25321464 13..198 98 <- Plus
3R 25321523..25321889 199..565 100 <- Plus
3R 25321958..25322213 566..821 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:43:11 Download gff for BS07067.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21147002..21147186 13..198 98 <- Plus
arm_3R 21147245..21147611 199..565 100 <- Plus
arm_3R 21147680..21147935 566..821 100   Plus

BS07067.5prime Sequence

925 bp (780 high quality bases) assembled on 2006-01-06

> BS07067.5prime
GAAGTTATCAGTCGACATGGCGTCCAGTAAAATCCCCGATTGGGTAACTG
CAGAAATATTTGAAGATTTGCTTAAGGCAAATGTGGATGGATACTCAAAA
ATTAAGAACTTTAAGGCGGACATTGGATCCGCTGCAGGTGAAAATTATGC
CACCATTATGCTTCGAGTCAAAATCGAAGTTGAGCTGCAGGATGGCAAAT
CGAAATCGGTATCCTACATGGTTAAGTTGCCCCACCAAGTGGAGGCTATT
CAGGAGATGATGAAACGAACCAACATCTTCGAAATCGAGCGTACCATGTA
TAACGAGGTTGTACCTGAACTAGAGGCGCTTTACAAGGCAGTAGGAGTGG
ACATCACATTCGGCGCCAAAAACTATGATCTCAAGAATGCCAAGACAGAC
TACGTGGCCCTGGAGGATTTGGGGTTGAAAGGGTTCAAGAATGCCAACCG
CCTCGAAGGGCTGGATCAAGAGCACACGGAGAGGGTTCTGCGAAAGCTAT
CCCAATGGCATGCTGCATCAGCTGTACGAGTGGCCACCAAAGGACCCTAT
CCCAAAATCCTACTTCAAGGCTTCTTTAAGGAGGAAAGCAGGCCCGTTAT
GTCTGAAATGATAAAAGGAATGGGCGCGAATTTCGTTAAAAGCTGCGCCA
CCTACGAAGGTCATGAGGCTTATTTAGACAAAGTCAAAGCGTTACAGCCT
GTTGCTATAGATAAGATTTTTGAGTTCGCCAAGGTCGAGCCAACGGAGTT
CAACGTTCTGAACCACGGCGATTCGTGGTCAAACAATATAATGTTTCAGT
ATGATGCCTTTGGAAAGATCAAGGANGTGTATTTGGTCGACTACCAGCTG
CCCAAGTACGGAACCGTGGCACAGGATCTGCTCTACTTCTTGCTCTCATC
CACAAAGCTGGAGGATAAACTGGCC

BS07067.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10562-PA 1218 CG10562-RA 1..909 17..925 4526 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10562-RA 1527 CG10562-RA 80..988 17..925 4534 99.9 Plus
CHKov1-RE 1463 CG10618-RE 94..980 29..915 1134 75.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25321958..25322452 685..191 2475 100 Minus
3R 32079331 3R 25321650..25321889 925..686 1189 99.6 Minus
3R 32079331 3R 25322504..25322678 191..17 875 100 Minus
3R 32079331 3R 25323997..25324411 685..271 590 76.1 Minus
3R 32079331 3R 25323699..25323880 915..734 404 81.3 Minus
3R 32079331 3R 25329061..25329223 191..29 245 76.7 Minus
Blast to na_te.dros performed on 2015-02-13 08:19:04 has no hits.

BS07067.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:01 Download gff for BS07067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10562-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:46:57 Download gff for BS07067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10562-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:58:42 Download gff for BS07067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10562-RA 69..988 6..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:27:28 Download gff for BS07067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10562-RA 69..988 6..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:27:28 Download gff for BS07067.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25321650..25321889 686..925 99 <- Minus
3R 25321958..25322451 192..685 100 <- Minus
3R 25322504..25322689 6..191 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:58:42 Download gff for BS07067.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21147372..21147611 686..925 99 <- Minus
arm_3R 21147680..21148173 192..685 100 <- Minus
arm_3R 21148226..21148411 6..191 97   Minus

BS07067.complete Sequence

1250 bp (1250 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635715

> BS07067.complete
GAAGTTATCAGTCGACATGGCGTCCAGTAAAATCCCCGATTGGGTAACTG
CAGAAATATTTGAAGATTTGCTTAAGGCAAATGTGGATGGATACTCAAAA
ATTAAGAACTTTAAGGCGGACATTGGATCCGCTGCAGGTGAAAATTATGC
CACCATTATGCTTCGAGTCAAAATCGAAGTTGAGCTGCAGGATGGCAAAT
CGAAATCGGTATCCTACATGGTTAAGTTGCCCCACCAAGTGGAGGCTATT
CAGGAGATGATGAAACGAACCAACATCTTCGAAATCGAGCGTACCATGTA
TAACGAGGTTGTACCTGAACTAGAGGCGCTTTACAAGGCAGTAGGAGTGG
ACATCACATTCGGCGCCAAAAACTATGATCTCAAGAATGCCAAGACAGAC
TACGTGGCCCTGGAGGATTTGGGGTTGAAAGGGTTCAAGAATGCCAACCG
CCTCGAAGGGCTGGATCAAGAGCACACGGAGAGGGTTCTGCGAAAGCTAT
CCCAATGGCATGCTGCATCAGCTGTACGAGTGGCCACCAAAGGACCCTAT
CCCAAAATCCTACTTCAAGGCTTCTTTAAGGAGGAAAGCAGGCCCGTTAT
GTCTGAAATGATAAAAGGAATGGGCGCGAATTTCGTTAAAAGCTGCGCCA
CCTACGAAGGTCATGAGGCTTATTTAGACAAAGTCAAAGCGTTACAGCCT
GTTGCTATAGATAAGATTTTTGAGTTCGCCAAGGTCGAGCCAACGGAGTT
CAACGTTCTGAACCACGGCGATTCGTGGTCAAACAATATAATGTTTCAGT
ATGATGCCTTTGGAAAGATCAAGGAGGTGTATTTGGTCGACTACCAGCTG
CCCAAGTACGGAACCGTGGCACAGGATCTGCTCTACTTCTTGCTCTCATC
CACAAAGCTGGAGGATAAACTGGCCAAATTCGATTATTATATTAAAATTT
ATCACGATAATCTGGTGGAGCACCTGAAGATTTTGAAATACTCGAAACCC
ATTCCTAGTCTGCGAGATATTCATTTGGCGCTGTTCAAATACGGCTACTT
CGGCTACACGGTCGCTACTGGTGTAATGTCTGCTGTTCTTTTGGATCCCA
CGGACAGTGCTAGTTTGGAAAACTTCATAGGTGGCAGTGACTTCCAGATG
CAGCTCTACAACAGTCCCCGTTACCGCAAACACATCCAAGCCGTCATGCC
CTGGCTGTTAAATCGTGGCGCCTTGGAGCTCTAGAAGCTTTCTAGACCAT

BS07067.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10562-RA 1218 CG10562-PA 1..1218 17..1234 6090 100 Plus
CHKov1-RE 1233 CG10618-PE 13..1109 29..1125 1330 74.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10562-RA 1527 CG10562-RA 80..1297 17..1234 6090 100 Plus
CHKov1-RE 1463 CG10618-RE 94..1190 29..1125 1330 74.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25321958..25322452 685..191 2475 100 Minus
3R 32079331 3R 25321522..25321889 1053..686 1840 100 Minus
3R 32079331 3R 25321283..25321465 1234..1052 915 100 Minus
3R 32079331 3R 25322504..25322678 191..17 875 100 Minus
3R 32079331 3R 25323997..25324411 685..271 590 76.1 Minus
3R 32079331 3R 25323570..25323880 1044..734 550 78.5 Minus
3R 32079331 3R 25329061..25329223 191..29 245 76.7 Minus
Blast to na_te.dros performed on 2014-11-27 19:57:51 has no hits.

BS07067.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:07 Download gff for BS07067.complete
Subject Subject Range Query Range Percent Splice Strand
CG10562-RA 1..1218 17..1234 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:40 Download gff for BS07067.complete
Subject Subject Range Query Range Percent Splice Strand
CG10562-RA 63..1294 6..1238 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:27 Download gff for BS07067.complete
Subject Subject Range Query Range Percent Splice Strand
CG10562-RA 80..1297 17..1234 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:07 Download gff for BS07067.complete
Subject Subject Range Query Range Percent Splice Strand
CG10562-RA 63..1294 6..1238 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:38 Download gff for BS07067.complete
Subject Subject Range Query Range Percent Splice Strand
CG10562-RA 80..1297 17..1234 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:38 Download gff for BS07067.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25321283..25321464 1053..1234 100 <- Minus
3R 25321523..25321889 686..1052 100 <- Minus
3R 25321958..25322451 192..685 100 <- Minus
3R 25322504..25322678 17..191 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:27 Download gff for BS07067.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21147005..21147186 1053..1234 100 <- Minus
arm_3R 21147245..21147611 686..1052 100 <- Minus
arm_3R 21147680..21148173 192..685 100 <- Minus
arm_3R 21148226..21148400 17..191 100   Minus

BS07067.pep Sequence

Translation from 16 to 1233

> BS07067.pep
MASSKIPDWVTAEIFEDLLKANVDGYSKIKNFKADIGSAAGENYATIMLR
VKIEVELQDGKSKSVSYMVKLPHQVEAIQEMMKRTNIFEIERTMYNEVVP
ELEALYKAVGVDITFGAKNYDLKNAKTDYVALEDLGLKGFKNANRLEGLD
QEHTERVLRKLSQWHAASAVRVATKGPYPKILLQGFFKEESRPVMSEMIK
GMGANFVKSCATYEGHEAYLDKVKALQPVAIDKIFEFAKVEPTEFNVLNH
GDSWSNNIMFQYDAFGKIKEVYLVDYQLPKYGTVAQDLLYFLLSSTKLED
KLAKFDYYIKIYHDNLVEHLKILKYSKPIPSLRDIHLALFKYGYFGYTVA
TGVMSAVLLDPTDSASLENFIGGSDFQMQLYNSPRYRKHIQAVMPWLLNR
GALEL*

BS07067.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10562-PA 405 CG10562-PA 1..405 1..405 2089 100 Plus
CHKov1-PE 410 CG10618-PE 1..408 1..404 1670 75.2 Plus
CG10560-PA 414 CG10560-PA 17..414 6..404 1027 49.9 Plus
CG10553-PA 414 CG10553-PA 17..414 6..404 975 47.1 Plus
CG10559-PB 415 CG10559-PB 7..414 3..404 965 45.7 Plus