Clone BS07070 Report

Search the DGRC for BS07070

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptGpo-1-RA
Protein status:BS07070.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07070.3prime Sequence

823 bp (774 high quality bases) assembled on 2006-01-06

> BS07070.3prime
ATGGTCTAGAAAGCTTTTACAAGCCGCCTCCGGATCGGTCCACGCTGATC
TGCTTCAGATTGGCCGCCTCGTGCTTCTGCTCCTCCAGCTCGGCCATGCG
CGCAAATCGGGAGTAGGCCACGTCGCCCGTTTTGATGGCCGACATCATCT
GAAGGTATTCGTCCAGTTCCACCTGGCCGTTCATGTTGGTATCGATCTCG
CGCAGGATTTCGTGCAGCTGCTCGCCAGAGACGTCGCCATCGCCGAAGCT
CTTGAGAGCGCGACGGATATCGTTGATGGAAACGTAGCCCTTCTTGTCTT
TGTCGATCAGCTGGAAGCGCTTGATGTATGTCTGGATCTCCTCCTTGGAC
AGCTTGATGGGTATGCGCTCCTTGGAGGTGCGGTTGACCGAGTGTCCCAT
CTCGTTGGCCAGGAACTCAGTGGCGTGCTTAATCTGGCGCTCCTTCTCGT
CCTTGGACCAGCCCAGCTCCTCGCCCATGATGTCAACGATCACTGGCAGC
GCCTCCTGTGCTGCCTGCACATTGAGGAAGGCCAGTCGCAGGCGACGGGC
GATCATATCGACAGCGGTACAGGCGTACTCTCGCACTCCGTACCGGATCT
CGGCATCGATGTATGGGAACTCGGGGTGGATGCGGTTACCAATGATGGGC
CAACGCTTGCCGGTCAACGAAGCCATTTTGGACACGGCGAAGGCGCGGTC
ACCGTACGACTTGGCCAGATGTTGGGCCACCTCGCACTCAAGTCCGAAGT
CCTGCACCAAACGGATGTACATGGTCGGGGTCCAGCCCTGGCCGCCTTCG
ATCTTCAGATAGGAGGTGACTGC

BS07070.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8256-PC 2175 l(2)k05713-RC 1369..2175 823..17 4035 100 Minus
CG8256-PB 2175 l(2)k05713-RB 1369..2175 823..17 4035 100 Minus
CG8256-PA 2175 l(2)k05713-RA 1369..2175 823..17 4035 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
Gpo-1-RD 2637 CG8256-RD 1704..2514 823..13 4040 99.9 Minus
Gpo-1-RA 2433 CG8256-RA 1500..2310 823..13 4040 99.9 Minus
Gpo-1-RB 2492 CG8256-RB 1559..2369 823..13 4040 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15858186..15858864 145..823 3380 99.9 Plus
2R 25286936 2R 15857875..15858013 13..151 680 99.3 Plus
Blast to na_te.dros performed on 2015-01-31 16:20:21 has no hits.

BS07070.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:06 Download gff for BS07070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8256-PB 1369..2175 17..823 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:04 Download gff for BS07070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8256-PA 1369..2175 17..823 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:22:58 Download gff for BS07070.3prime
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RB 1559..2369 13..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:41:36 Download gff for BS07070.3prime
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RB 1559..2369 13..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:41:36 Download gff for BS07070.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15857875..15858010 13..148 99 <- Plus
2R 15858190..15858864 149..823 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:22:58 Download gff for BS07070.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11745380..11745515 13..148 99 <- Plus
arm_2R 11745695..11746369 149..823 100   Plus

BS07070.5prime Sequence

837 bp (795 high quality bases) assembled on 2006-01-06

> BS07070.5prime
GAAGTTATCAGTCGACATGACCTCGCGAATGTTCAAGTTCGGCGTAACAG
CCGCTAGCGCCTGTGTTGGTTCCGTCCTGGCCTCGTACACCCTGGATCGC
TGGAACACCCCCCATGTGGTTAACAATGCCACCGTGCCGCCGAAAAGGAA
GCGCACGCTGCCCCCGCGAGCGGATCAGATCAAATCCCTGATGAGCGGCG
AGGAGTTCGACGTGCTGATCATCGGCGGAGGAGCCACGGGAGCTGGATGT
GCTCTCGACTCGGTTACAAGGGGTCTTAAGACCGCCCTGGTGGAGCTGGA
TGACTTTGCCAGCGGAACTTCCTCGAGATCCACGAAACTTATCCATGGCG
GAGTGCGATATCTGCAGAAGGCCATTTTGGGCCTAGATCTAGAGCAGTAC
CGCATGGTGAAGGAGGCGCTGGCTGAGCGCGCCACCATGCTCGAATCGGC
GCCCCACTTGACCCACCCTCTGCCCATCATGCTGCCAGTTTACACATGGT
GGCAGGTTCCTTACTACTGGGTGGGCATCAAGGCCTACGATCTGGTGGCC
GGCGATCGCAATGTGAAAAGCTCGTACTACCTCTCCAAGAAGGATGCCCT
CGAACTGTTCCCCATGCTCAAGAAGGACAAGCTGTGCGGCGCTATCGTCT
ACTATGATGGCCAGCAGGATGATGCCAGGATGTGTCTGGCGGTGGCGCTG
ACTGCCGCTCGTCACGGTGCCACTGTGTGCAATCACGTGGAGGTGAAGGA
GCTGCTGAAGAAGGACGACGGCACTGGCAAACAGGTGCTGTGCGGAGCCA
AGGTCAAGGACCATATCTCCGGCAAGGAGTTCACCGT

BS07070.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8256-PC 2175 l(2)k05713-RC 1..821 17..837 4105 100 Plus
CG8256-PB 2175 l(2)k05713-RB 1..821 17..837 4105 100 Plus
CG8256-PA 2175 l(2)k05713-RA 1..821 17..837 4105 100 Plus
CG7311-PA 2019 CG7311-RA 186..222 199..235 135 94.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
Gpo-1-RD 2637 CG8256-RD 332..1156 13..837 4110 99.9 Plus
Gpo-1-RA 2433 CG8256-RA 128..952 13..837 4110 99.9 Plus
Gpo-1-RB 2492 CG8256-RB 187..1011 13..837 4110 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15859598..15859939 837..496 1710 100 Minus
2R 25286936 2R 15860375..15860531 274..118 785 100 Minus
2R 25286936 2R 15860007..15860119 495..383 565 100 Minus
2R 25286936 2R 15860195..15860305 382..272 555 100 Minus
2R 25286936 2R 15860599..15860706 120..13 525 99.1 Minus
Blast to na_te.dros performed on 2015-02-13 08:18:15 has no hits.

BS07070.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:07 Download gff for BS07070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8256-PB 1..821 17..837 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:06 Download gff for BS07070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8256-PA 1..821 17..837 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:58:24 Download gff for BS07070.5prime
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RB 178..1011 3..837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:23:58 Download gff for BS07070.5prime
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RB 178..1011 3..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:23:58 Download gff for BS07070.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15859598..15859939 496..837 100 <- Minus
2R 15860007..15860119 383..495 100 <- Minus
2R 15860195..15860304 273..382 100 <- Minus
2R 15860377..15860530 119..272 100 <- Minus
2R 15860601..15860713 3..118 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:58:24 Download gff for BS07070.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11747882..11748035 119..272 100 <- Minus
arm_2R 11748106..11748218 3..118 95   Minus
arm_2R 11747103..11747444 496..837 100 <- Minus
arm_2R 11747512..11747624 383..495 100 <- Minus
arm_2R 11747700..11747809 273..382 100 <- Minus

BS07070.complete Sequence

2207 bp assembled on 2008-01-02

GenBank Submission: FJ635716

> BS07070.complete
GAAGTTATCAGTCGACATGACCTCGCGAATGTTCAAGTTCGGCGTAACAG
CCGCTAGCGCCTGTGTTGGTTCCGTCCTGGCCTCGTACACCCTGGATCGC
TGGAACACCCCCCATGTGGTTAACAATGCCACCGTGCCGCCGAAAAGGAA
GCGCACGCTGCCCCCGCGAGCGGATCAGATCAAATCCCTGATGAGCGGCG
AGGAGTTCGACGTGCTGATCATCGGCGGAGGAGCCACGGGAGCTGGATGT
GCTCTCGACTCGGTTACAAGGGGTCTTAAGACCGCCCTGGTGGAGCTGGA
TGACTTTGCCAGCGGAACTTCCTCGAGATCCACGAAACTTATCCATGGCG
GAGTGCGATATCTGCAGAAGGCCATTTTGGGCCTAGATCTAGAGCAGTAC
CGCATGGTGAAGGAGGCGCTGGCTGAGCGCGCCACCATGCTCGAATCGGC
GCCCCACTTGACCCACCCTCTGCCCATCATGCTGCCAGTTTACACATGGT
GGCAGGTTCCTTACTACTGGGTGGGCATCAAGGCCTACGATCTGGTGGCC
GGCGATCGCAATGTGAAAAGCTCGTACTACCTCTCCAAGAAGGATGCCCT
CGAACTGTTCCCCATGCTCAAGAAGGACAAGCTGTGCGGCGCTATCGTCT
ACTATGATGGCCAGCAGGATGATGCCAGGATGTGTCTGGCGGTGGCGCTG
ACTGCCGCTCGTCACGGTGCCACTGTGTGCAATCACGTGGAGGTGAAGGA
GCTGCTGAAGAAGGACGACGGCACTGGCAAACAGGTGCTGTGCGGAGCCA
AGGTCAAGGACCATATCTCCGGCAAGGAGTTCACCGTGAAGGCCAAGTGC
ATTGTTAATGCCGCCGGTCCCTTCACGGACTCCATCCGCAAGATGGACAA
CCCCACGGTGAAGAGCATCTGCTGCCCCAGTTCCGGAGTTCATATCGTAC
TGCCTGGCTACTATAGCCCCGATCAGATGGGTCTGCTGGATCCCTCCACT
TCCGACGGCCGCGTCATCTTCTTCCTGCCCTGGCAGAGGCAGACGATTGC
CGGCACCACCGACCTGCCCTGCGAAATCACCCACAATCCAACGCCCACCG
AGGACGAGATCCAGTTTATCCTCAACGAGATCAAGAACTATCTGAATGCG
GATGTGGAGGTGCGCCGTGGCGATGTGCTCTCCGCATGGAGCGGCATCCG
CCCTCTGGTCTCCGATCCCAACAAGGACGACACCCAGTCCCTGGCCCGCA
ACCACATCGTCCACGTCAGCCCCTCCAATCTCATCACCATCGCTGGCGGC
AAGTGGACCACCTACAGGGCCATGGCCGAGCACACCATCGACGCGGCTAT
CAAGGCCTGCAACTTAAAGCCAGAGCGCGCCGAGGCAGTCACCTCCTATC
TGAAGATCGAAGGCGGCCAGGGCTGGACCCCGACCATGTACATCCGTTTG
GTGCAGGACTTCGGACTTGAGTGCGAGGTGGCCCAACATCTGGCCAAGTC
GTACGGTGACCGCGCCTTCGCCGTGTCCAAAATGGCTTCGTTGACCGGCA
AGCGTTGGCCCATCATTGGTAACCGCATCCACCCCGAGTTCCCATACATC
GATGCCGAGATCCGGTACGGAGTGCGAGAGTACGCCTGTACCGCTGTCGA
TATGATCGCCCGTCGCCTGCGACTGGCCTTCCTCAATGTGCAGGCAGCAC
AGGAGGCGCTGCCAGTGATCGTTGACATCATGGGCGAGGAGCTGGGCTGG
TCCAAGGACGAGAAGGAGCGCCAGATTAAGCACGCCACTGAGTTCCTGGC
CAACGAGATGGGACACTCGGTCAACCGCACCTCCAAGGAGCGCATACCCA
TCAAGCTGTCCAAGGAGGAGATCCAGACATACATCAAGCGCTTCCAGCTG
ATCGACAAAGACAAGAAGGGCTACGTTTCCATCAACGATATCCGTCGCGC
TCTCAAGAGCTTCGGCGATGGCGACGTCTCTGGCGAGCAGCTGCACGAAA
TCCTGCGCGAGATCGATACCAACATGAACGGCCAGGTGGAACTGGACGAA
TACCTTCAGATGATGTCGGCCATCAAAACGGGCGACGTGGCCTACTCCCG
ATTTGCGCGCATGGCCGAGCTGGAGGAGCAGAAGCACGAGGCGGCCAATC
TGAAGCAGATCAGCGTGGACCGATCCGGAGGCGGCTTGTAAAAGCTTTCT
AGACCAT

BS07070.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
Gpo-1-RD 2175 CG8256-PD 1..2175 17..2191 10875 100 Plus
Gpo-1-RA 2175 CG8256-PA 1..2175 17..2191 10875 100 Plus
Gpo-1-RB 2175 CG8256-PB 1..2175 17..2191 10875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
Gpo-1-RD 2637 CG8256-RD 332..2514 13..2195 10885 99.9 Plus
Gpo-1-RA 2433 CG8256-RA 128..2310 13..2195 10885 99.9 Plus
Gpo-1-RB 2492 CG8256-RB 187..2369 13..2195 10885 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15859080..15859939 1355..496 4300 100 Minus
2R 25286936 2R 15858186..15858894 2063..1355 3530 99.9 Minus
2R 25286936 2R 15860375..15860531 274..118 785 100 Minus
2R 25286936 2R 15857875..15858013 2195..2057 680 99.3 Minus
2R 25286936 2R 15860007..15860119 495..383 565 100 Minus
2R 25286936 2R 15860195..15860305 382..272 555 100 Minus
2R 25286936 2R 15860599..15860706 120..13 525 99.1 Minus
Blast to na_te.dros performed on 2014-11-27 10:44:22 has no hits.

BS07070.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:45 Download gff for BS07070.complete
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RA 1..2175 17..2191 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:21 Download gff for BS07070.complete
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RA 363..2535 17..2189 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:18 Download gff for BS07070.complete
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RB 191..2363 17..2189 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:46 Download gff for BS07070.complete
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RA 350..2541 3..2195 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:35 Download gff for BS07070.complete
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RB 191..2363 17..2189 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:35 Download gff for BS07070.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15857881..15858010 2060..2189 100 <- Minus
2R 15858190..15858893 1356..2059 100 <- Minus
2R 15859080..15859939 496..1355 100 <- Minus
2R 15860007..15860119 383..495 100 <- Minus
2R 15860195..15860304 273..382 100 <- Minus
2R 15860377..15860530 119..272 100 <- Minus
2R 15860601..15860702 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:18 Download gff for BS07070.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11747512..11747624 383..495 100 <- Minus
arm_2R 11747700..11747809 273..382 100 <- Minus
arm_2R 11747882..11748035 119..272 100 <- Minus
arm_2R 11748106..11748207 17..118 100   Minus
arm_2R 11745386..11745515 2060..2189 100 <- Minus
arm_2R 11745695..11746398 1356..2059 100 <- Minus
arm_2R 11746585..11747444 496..1355 100 <- Minus

BS07070.pep Sequence

Translation from 16 to 2190

> BS07070.pep
MTSRMFKFGVTAASACVGSVLASYTLDRWNTPHVVNNATVPPKRKRTLPP
RADQIKSLMSGEEFDVLIIGGGATGAGCALDSVTRGLKTALVELDDFASG
TSSRSTKLIHGGVRYLQKAILGLDLEQYRMVKEALAERATMLESAPHLTH
PLPIMLPVYTWWQVPYYWVGIKAYDLVAGDRNVKSSYYLSKKDALELFPM
LKKDKLCGAIVYYDGQQDDARMCLAVALTAARHGATVCNHVEVKELLKKD
DGTGKQVLCGAKVKDHISGKEFTVKAKCIVNAAGPFTDSIRKMDNPTVKS
ICCPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPWQRQTIAGTTDL
PCEITHNPTPTEDEIQFILNEIKNYLNADVEVRRGDVLSAWSGIRPLVSD
PNKDDTQSLARNHIVHVSPSNLITIAGGKWTTYRAMAEHTIDAAIKACNL
KPERAEAVTSYLKIEGGQGWTPTMYIRLVQDFGLECEVAQHLAKSYGDRA
FAVSKMASLTGKRWPIIGNRIHPEFPYIDAEIRYGVREYACTAVDMIARR
LRLAFLNVQAAQEALPVIVDIMGEELGWSKDEKERQIKHATEFLANEMGH
SVNRTSKERIPIKLSKEEIQTYIKRFQLIDKDKKGYVSINDIRRALKSFG
DGDVSGEQLHEILREIDTNMNGQVELDEYLQMMSAIKTGDVAYSRFARMA
ELEEQKHEAANLKQISVDRSGGGL*

BS07070.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Gpo-1-PD 724 CG8256-PD 1..724 1..724 3768 100 Plus
Gpo-1-PA 724 CG8256-PA 1..724 1..724 3768 100 Plus
Gpo-1-PB 724 CG8256-PB 1..724 1..724 3768 100 Plus
Gpo-1-PC 724 CG8256-PC 1..724 1..724 3768 100 Plus
CG2137-PA 713 CG2137-PA 29..713 37..724 1659 45.8 Plus