Clone Sequence Records
BS07070.3prime Sequence
823 bp (774 high quality bases) assembled on 2006-01-06
> BS07070.3prime
ATGGTCTAGAAAGCTTTTACAAGCCGCCTCCGGATCGGTCCACGCTGATC
TGCTTCAGATTGGCCGCCTCGTGCTTCTGCTCCTCCAGCTCGGCCATGCG
CGCAAATCGGGAGTAGGCCACGTCGCCCGTTTTGATGGCCGACATCATCT
GAAGGTATTCGTCCAGTTCCACCTGGCCGTTCATGTTGGTATCGATCTCG
CGCAGGATTTCGTGCAGCTGCTCGCCAGAGACGTCGCCATCGCCGAAGCT
CTTGAGAGCGCGACGGATATCGTTGATGGAAACGTAGCCCTTCTTGTCTT
TGTCGATCAGCTGGAAGCGCTTGATGTATGTCTGGATCTCCTCCTTGGAC
AGCTTGATGGGTATGCGCTCCTTGGAGGTGCGGTTGACCGAGTGTCCCAT
CTCGTTGGCCAGGAACTCAGTGGCGTGCTTAATCTGGCGCTCCTTCTCGT
CCTTGGACCAGCCCAGCTCCTCGCCCATGATGTCAACGATCACTGGCAGC
GCCTCCTGTGCTGCCTGCACATTGAGGAAGGCCAGTCGCAGGCGACGGGC
GATCATATCGACAGCGGTACAGGCGTACTCTCGCACTCCGTACCGGATCT
CGGCATCGATGTATGGGAACTCGGGGTGGATGCGGTTACCAATGATGGGC
CAACGCTTGCCGGTCAACGAAGCCATTTTGGACACGGCGAAGGCGCGGTC
ACCGTACGACTTGGCCAGATGTTGGGCCACCTCGCACTCAAGTCCGAAGT
CCTGCACCAAACGGATGTACATGGTCGGGGTCCAGCCCTGGCCGCCTTCG
ATCTTCAGATAGGAGGTGACTGC
BS07070.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8256-PC | 2175 | l(2)k05713-RC | 1369..2175 | 823..17 | 4035 | 100 | Minus |
CG8256-PB | 2175 | l(2)k05713-RB | 1369..2175 | 823..17 | 4035 | 100 | Minus |
CG8256-PA | 2175 | l(2)k05713-RA | 1369..2175 | 823..17 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gpo-1-RD | 2637 | CG8256-RD | 1704..2514 | 823..13 | 4040 | 99.9 | Minus |
Gpo-1-RA | 2433 | CG8256-RA | 1500..2310 | 823..13 | 4040 | 99.9 | Minus |
Gpo-1-RB | 2492 | CG8256-RB | 1559..2369 | 823..13 | 4040 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15858186..15858864 | 145..823 | 3380 | 99.9 | Plus |
2R | 25286936 | 2R | 15857875..15858013 | 13..151 | 680 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:20:21 has no hits.
BS07070.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:06 Download gff for
BS07070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8256-PB | 1369..2175 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:04 Download gff for
BS07070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8256-PA | 1369..2175 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:22:58 Download gff for
BS07070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gpo-1-RB | 1559..2369 | 13..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:41:36 Download gff for
BS07070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gpo-1-RB | 1559..2369 | 13..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:41:36 Download gff for
BS07070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15857875..15858010 | 13..148 | 99 | <- | Plus |
2R | 15858190..15858864 | 149..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:22:58 Download gff for
BS07070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11745380..11745515 | 13..148 | 99 | <- | Plus |
arm_2R | 11745695..11746369 | 149..823 | 100 | | Plus |
BS07070.5prime Sequence
837 bp (795 high quality bases) assembled on 2006-01-06
> BS07070.5prime
GAAGTTATCAGTCGACATGACCTCGCGAATGTTCAAGTTCGGCGTAACAG
CCGCTAGCGCCTGTGTTGGTTCCGTCCTGGCCTCGTACACCCTGGATCGC
TGGAACACCCCCCATGTGGTTAACAATGCCACCGTGCCGCCGAAAAGGAA
GCGCACGCTGCCCCCGCGAGCGGATCAGATCAAATCCCTGATGAGCGGCG
AGGAGTTCGACGTGCTGATCATCGGCGGAGGAGCCACGGGAGCTGGATGT
GCTCTCGACTCGGTTACAAGGGGTCTTAAGACCGCCCTGGTGGAGCTGGA
TGACTTTGCCAGCGGAACTTCCTCGAGATCCACGAAACTTATCCATGGCG
GAGTGCGATATCTGCAGAAGGCCATTTTGGGCCTAGATCTAGAGCAGTAC
CGCATGGTGAAGGAGGCGCTGGCTGAGCGCGCCACCATGCTCGAATCGGC
GCCCCACTTGACCCACCCTCTGCCCATCATGCTGCCAGTTTACACATGGT
GGCAGGTTCCTTACTACTGGGTGGGCATCAAGGCCTACGATCTGGTGGCC
GGCGATCGCAATGTGAAAAGCTCGTACTACCTCTCCAAGAAGGATGCCCT
CGAACTGTTCCCCATGCTCAAGAAGGACAAGCTGTGCGGCGCTATCGTCT
ACTATGATGGCCAGCAGGATGATGCCAGGATGTGTCTGGCGGTGGCGCTG
ACTGCCGCTCGTCACGGTGCCACTGTGTGCAATCACGTGGAGGTGAAGGA
GCTGCTGAAGAAGGACGACGGCACTGGCAAACAGGTGCTGTGCGGAGCCA
AGGTCAAGGACCATATCTCCGGCAAGGAGTTCACCGT
BS07070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8256-PC | 2175 | l(2)k05713-RC | 1..821 | 17..837 | 4105 | 100 | Plus |
CG8256-PB | 2175 | l(2)k05713-RB | 1..821 | 17..837 | 4105 | 100 | Plus |
CG8256-PA | 2175 | l(2)k05713-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
CG7311-PA | 2019 | CG7311-RA | 186..222 | 199..235 | 135 | 94.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:18:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gpo-1-RD | 2637 | CG8256-RD | 332..1156 | 13..837 | 4110 | 99.9 | Plus |
Gpo-1-RA | 2433 | CG8256-RA | 128..952 | 13..837 | 4110 | 99.9 | Plus |
Gpo-1-RB | 2492 | CG8256-RB | 187..1011 | 13..837 | 4110 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:18:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15859598..15859939 | 837..496 | 1710 | 100 | Minus |
2R | 25286936 | 2R | 15860375..15860531 | 274..118 | 785 | 100 | Minus |
2R | 25286936 | 2R | 15860007..15860119 | 495..383 | 565 | 100 | Minus |
2R | 25286936 | 2R | 15860195..15860305 | 382..272 | 555 | 100 | Minus |
2R | 25286936 | 2R | 15860599..15860706 | 120..13 | 525 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:18:15 has no hits.
BS07070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:07 Download gff for
BS07070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8256-PB | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:06 Download gff for
BS07070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8256-PA | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:58:24 Download gff for
BS07070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gpo-1-RB | 178..1011 | 3..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:23:58 Download gff for
BS07070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gpo-1-RB | 178..1011 | 3..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:23:58 Download gff for
BS07070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15859598..15859939 | 496..837 | 100 | <- | Minus |
2R | 15860007..15860119 | 383..495 | 100 | <- | Minus |
2R | 15860195..15860304 | 273..382 | 100 | <- | Minus |
2R | 15860377..15860530 | 119..272 | 100 | <- | Minus |
2R | 15860601..15860713 | 3..118 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:58:24 Download gff for
BS07070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11747882..11748035 | 119..272 | 100 | <- | Minus |
arm_2R | 11748106..11748218 | 3..118 | 95 | | Minus |
arm_2R | 11747103..11747444 | 496..837 | 100 | <- | Minus |
arm_2R | 11747512..11747624 | 383..495 | 100 | <- | Minus |
arm_2R | 11747700..11747809 | 273..382 | 100 | <- | Minus |
BS07070.complete Sequence
2207 bp assembled on 2008-01-02
GenBank Submission: FJ635716
> BS07070.complete
GAAGTTATCAGTCGACATGACCTCGCGAATGTTCAAGTTCGGCGTAACAG
CCGCTAGCGCCTGTGTTGGTTCCGTCCTGGCCTCGTACACCCTGGATCGC
TGGAACACCCCCCATGTGGTTAACAATGCCACCGTGCCGCCGAAAAGGAA
GCGCACGCTGCCCCCGCGAGCGGATCAGATCAAATCCCTGATGAGCGGCG
AGGAGTTCGACGTGCTGATCATCGGCGGAGGAGCCACGGGAGCTGGATGT
GCTCTCGACTCGGTTACAAGGGGTCTTAAGACCGCCCTGGTGGAGCTGGA
TGACTTTGCCAGCGGAACTTCCTCGAGATCCACGAAACTTATCCATGGCG
GAGTGCGATATCTGCAGAAGGCCATTTTGGGCCTAGATCTAGAGCAGTAC
CGCATGGTGAAGGAGGCGCTGGCTGAGCGCGCCACCATGCTCGAATCGGC
GCCCCACTTGACCCACCCTCTGCCCATCATGCTGCCAGTTTACACATGGT
GGCAGGTTCCTTACTACTGGGTGGGCATCAAGGCCTACGATCTGGTGGCC
GGCGATCGCAATGTGAAAAGCTCGTACTACCTCTCCAAGAAGGATGCCCT
CGAACTGTTCCCCATGCTCAAGAAGGACAAGCTGTGCGGCGCTATCGTCT
ACTATGATGGCCAGCAGGATGATGCCAGGATGTGTCTGGCGGTGGCGCTG
ACTGCCGCTCGTCACGGTGCCACTGTGTGCAATCACGTGGAGGTGAAGGA
GCTGCTGAAGAAGGACGACGGCACTGGCAAACAGGTGCTGTGCGGAGCCA
AGGTCAAGGACCATATCTCCGGCAAGGAGTTCACCGTGAAGGCCAAGTGC
ATTGTTAATGCCGCCGGTCCCTTCACGGACTCCATCCGCAAGATGGACAA
CCCCACGGTGAAGAGCATCTGCTGCCCCAGTTCCGGAGTTCATATCGTAC
TGCCTGGCTACTATAGCCCCGATCAGATGGGTCTGCTGGATCCCTCCACT
TCCGACGGCCGCGTCATCTTCTTCCTGCCCTGGCAGAGGCAGACGATTGC
CGGCACCACCGACCTGCCCTGCGAAATCACCCACAATCCAACGCCCACCG
AGGACGAGATCCAGTTTATCCTCAACGAGATCAAGAACTATCTGAATGCG
GATGTGGAGGTGCGCCGTGGCGATGTGCTCTCCGCATGGAGCGGCATCCG
CCCTCTGGTCTCCGATCCCAACAAGGACGACACCCAGTCCCTGGCCCGCA
ACCACATCGTCCACGTCAGCCCCTCCAATCTCATCACCATCGCTGGCGGC
AAGTGGACCACCTACAGGGCCATGGCCGAGCACACCATCGACGCGGCTAT
CAAGGCCTGCAACTTAAAGCCAGAGCGCGCCGAGGCAGTCACCTCCTATC
TGAAGATCGAAGGCGGCCAGGGCTGGACCCCGACCATGTACATCCGTTTG
GTGCAGGACTTCGGACTTGAGTGCGAGGTGGCCCAACATCTGGCCAAGTC
GTACGGTGACCGCGCCTTCGCCGTGTCCAAAATGGCTTCGTTGACCGGCA
AGCGTTGGCCCATCATTGGTAACCGCATCCACCCCGAGTTCCCATACATC
GATGCCGAGATCCGGTACGGAGTGCGAGAGTACGCCTGTACCGCTGTCGA
TATGATCGCCCGTCGCCTGCGACTGGCCTTCCTCAATGTGCAGGCAGCAC
AGGAGGCGCTGCCAGTGATCGTTGACATCATGGGCGAGGAGCTGGGCTGG
TCCAAGGACGAGAAGGAGCGCCAGATTAAGCACGCCACTGAGTTCCTGGC
CAACGAGATGGGACACTCGGTCAACCGCACCTCCAAGGAGCGCATACCCA
TCAAGCTGTCCAAGGAGGAGATCCAGACATACATCAAGCGCTTCCAGCTG
ATCGACAAAGACAAGAAGGGCTACGTTTCCATCAACGATATCCGTCGCGC
TCTCAAGAGCTTCGGCGATGGCGACGTCTCTGGCGAGCAGCTGCACGAAA
TCCTGCGCGAGATCGATACCAACATGAACGGCCAGGTGGAACTGGACGAA
TACCTTCAGATGATGTCGGCCATCAAAACGGGCGACGTGGCCTACTCCCG
ATTTGCGCGCATGGCCGAGCTGGAGGAGCAGAAGCACGAGGCGGCCAATC
TGAAGCAGATCAGCGTGGACCGATCCGGAGGCGGCTTGTAAAAGCTTTCT
AGACCAT
BS07070.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gpo-1-RD | 2175 | CG8256-PD | 1..2175 | 17..2191 | 10875 | 100 | Plus |
Gpo-1-RA | 2175 | CG8256-PA | 1..2175 | 17..2191 | 10875 | 100 | Plus |
Gpo-1-RB | 2175 | CG8256-PB | 1..2175 | 17..2191 | 10875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gpo-1-RD | 2637 | CG8256-RD | 332..2514 | 13..2195 | 10885 | 99.9 | Plus |
Gpo-1-RA | 2433 | CG8256-RA | 128..2310 | 13..2195 | 10885 | 99.9 | Plus |
Gpo-1-RB | 2492 | CG8256-RB | 187..2369 | 13..2195 | 10885 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15859080..15859939 | 1355..496 | 4300 | 100 | Minus |
2R | 25286936 | 2R | 15858186..15858894 | 2063..1355 | 3530 | 99.9 | Minus |
2R | 25286936 | 2R | 15860375..15860531 | 274..118 | 785 | 100 | Minus |
2R | 25286936 | 2R | 15857875..15858013 | 2195..2057 | 680 | 99.3 | Minus |
2R | 25286936 | 2R | 15860007..15860119 | 495..383 | 565 | 100 | Minus |
2R | 25286936 | 2R | 15860195..15860305 | 382..272 | 555 | 100 | Minus |
2R | 25286936 | 2R | 15860599..15860706 | 120..13 | 525 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:44:22 has no hits.
BS07070.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:45 Download gff for
BS07070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gpo-1-RA | 1..2175 | 17..2191 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:21 Download gff for
BS07070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gpo-1-RA | 363..2535 | 17..2189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:18 Download gff for
BS07070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gpo-1-RB | 191..2363 | 17..2189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:46 Download gff for
BS07070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gpo-1-RA | 350..2541 | 3..2195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:35 Download gff for
BS07070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gpo-1-RB | 191..2363 | 17..2189 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:35 Download gff for
BS07070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15857881..15858010 | 2060..2189 | 100 | <- | Minus |
2R | 15858190..15858893 | 1356..2059 | 100 | <- | Minus |
2R | 15859080..15859939 | 496..1355 | 100 | <- | Minus |
2R | 15860007..15860119 | 383..495 | 100 | <- | Minus |
2R | 15860195..15860304 | 273..382 | 100 | <- | Minus |
2R | 15860377..15860530 | 119..272 | 100 | <- | Minus |
2R | 15860601..15860702 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:18 Download gff for
BS07070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11747512..11747624 | 383..495 | 100 | <- | Minus |
arm_2R | 11747700..11747809 | 273..382 | 100 | <- | Minus |
arm_2R | 11747882..11748035 | 119..272 | 100 | <- | Minus |
arm_2R | 11748106..11748207 | 17..118 | 100 | | Minus |
arm_2R | 11745386..11745515 | 2060..2189 | 100 | <- | Minus |
arm_2R | 11745695..11746398 | 1356..2059 | 100 | <- | Minus |
arm_2R | 11746585..11747444 | 496..1355 | 100 | <- | Minus |
BS07070.pep Sequence
Translation from 16 to 2190
> BS07070.pep
MTSRMFKFGVTAASACVGSVLASYTLDRWNTPHVVNNATVPPKRKRTLPP
RADQIKSLMSGEEFDVLIIGGGATGAGCALDSVTRGLKTALVELDDFASG
TSSRSTKLIHGGVRYLQKAILGLDLEQYRMVKEALAERATMLESAPHLTH
PLPIMLPVYTWWQVPYYWVGIKAYDLVAGDRNVKSSYYLSKKDALELFPM
LKKDKLCGAIVYYDGQQDDARMCLAVALTAARHGATVCNHVEVKELLKKD
DGTGKQVLCGAKVKDHISGKEFTVKAKCIVNAAGPFTDSIRKMDNPTVKS
ICCPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPWQRQTIAGTTDL
PCEITHNPTPTEDEIQFILNEIKNYLNADVEVRRGDVLSAWSGIRPLVSD
PNKDDTQSLARNHIVHVSPSNLITIAGGKWTTYRAMAEHTIDAAIKACNL
KPERAEAVTSYLKIEGGQGWTPTMYIRLVQDFGLECEVAQHLAKSYGDRA
FAVSKMASLTGKRWPIIGNRIHPEFPYIDAEIRYGVREYACTAVDMIARR
LRLAFLNVQAAQEALPVIVDIMGEELGWSKDEKERQIKHATEFLANEMGH
SVNRTSKERIPIKLSKEEIQTYIKRFQLIDKDKKGYVSINDIRRALKSFG
DGDVSGEQLHEILREIDTNMNGQVELDEYLQMMSAIKTGDVAYSRFARMA
ELEEQKHEAANLKQISVDRSGGGL*
BS07070.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gpo-1-PD | 724 | CG8256-PD | 1..724 | 1..724 | 3768 | 100 | Plus |
Gpo-1-PA | 724 | CG8256-PA | 1..724 | 1..724 | 3768 | 100 | Plus |
Gpo-1-PB | 724 | CG8256-PB | 1..724 | 1..724 | 3768 | 100 | Plus |
Gpo-1-PC | 724 | CG8256-PC | 1..724 | 1..724 | 3768 | 100 | Plus |
CG2137-PA | 713 | CG2137-PA | 29..713 | 37..724 | 1659 | 45.8 | Plus |