Clone Sequence Records
BS07072.3prime Sequence
883 bp (866 high quality bases) assembled on 2006-01-06
> BS07072.3prime
ATGGTCTAGAAAGCTTCTATTCCGCCCGCAGTACGGGCGTCACCTGGACC
TCGTTCTGATCATCGCTCTGGATGTCGAACTTCAGCTTGGTCAGCTCCTT
GAGCTCGCCATTCGATTCGGCGGGCACCTCGCTGACCACCTTCACGGTAT
CCGGATACTTGTTCTCCCCGCTGCCCAATTCCTGCGAGAAGCTGACCACG
GTCTTGGGTTCGTAGTTCACTCCCAGGGCGCCACTGGGATCCGGAGTGGG
TATGCTGGGTCCATCGCTACTCTGTCCGTTGGTGTGCGAAATGGTAATGG
CATCCGCCTCCTCCTTATGACCATTGGTGGCAGGAGCAGCCTCCTCTTCC
TTAAGGCCATTGGTGGCAGGAACAGCCTTCTCCTCCTCCTTCTGGCCATT
TTGCACGGGAGCAGCTGGCTCCACCACCTCCACCTTGGCTTCCACGGCTG
CGGGAGCTTGAGTGGGCTCCTCTACCACGGCCTCCGCCTTTCGTTCGGCT
GCCACTGGCTCTGGAGTAGGTTCTGGAACTGGCTCAGGGGTGGCTTCCAC
CTCCGCCTCATCCTCTCCTGCCACTGCCTGGTTAACTTGCTCAATGGCCT
TGGCCACTTCTTCGGGTCCTACGTCAGAGTTCTTTGGCTCCTCACTGTGT
CCATTGCTTACAGGGTCCTCTGGTTCGGGTTTAGTGATCAGGGCAGAGGT
GGTTACAGCGGCCACCTGAGGCTGTACCTCCACCTTCTCCTCCTCCTCCA
CCTTCTCGGCCACGGGAGCGGGAATCTCGAGGGCGGGCACAATGGCCGGA
CTGGCCATGGTCTCCACGAACGAGGTGCGATTGGGCGAGTCCGGCGAGAT
CATAACGTGCGTGAAGTAGCCGCTGCGCCGGCT
BS07072.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1623-PB | 1371 | CG1623-RB | 505..1371 | 883..17 | 4335 | 100 | Minus |
| CG1623-PD | 1371 | CG1623-RD | 505..1371 | 883..17 | 4335 | 100 | Minus |
| CG1623-PA | 1371 | CG1623-RA | 505..1371 | 883..17 | 4335 | 100 | Minus |
| CG1623-PC | 1371 | CG1623-RC | 505..1371 | 883..17 | 4335 | 100 | Minus |
| CG1623-PE | 1371 | CG1623-RE | 505..1371 | 883..17 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hebe-RF | 1820 | CG1623-RF | 631..1500 | 883..14 | 4350 | 100 | Minus |
| hebe-RE | 1825 | CG1623-RE | 636..1505 | 883..14 | 4350 | 100 | Minus |
| hebe-RD | 1956 | CG1623-RD | 767..1636 | 883..14 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9828424..9829293 | 14..883 | 4350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:29:57 has no hits.
BS07072.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:11 Download gff for
BS07072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1623-PB | 505..1371 | 17..883 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:10 Download gff for
BS07072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1623-PE | 505..1371 | 17..883 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:44:44 Download gff for
BS07072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hebe-RD | 767..1636 | 14..883 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:38 Download gff for
BS07072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hebe-RD | 767..1636 | 14..883 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:38 Download gff for
BS07072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9828424..9829293 | 14..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:44:44 Download gff for
BS07072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5715929..5716798 | 14..883 | 100 | | Plus |
BS07072.5prime Sequence
888 bp (780 high quality bases) assembled on 2006-01-06
> BS07072.5prime
GAAGTTATCAGTCGACATGGCCGAGACAATCAACAACAAGCCGAGCATAC
AGATCCGCAGCGGACTGCCCTCGCCTCTGCCGGACAAGAGTCCCTCGCCG
GCCACCAAGCTGCTGATCAGCCACGGCAAGCCCAACTTCACCATCGCCAA
GTCGCCGAAGATCGACGAGAACGGAAACGGAAACCCACTGTCCGCCCAGC
CCAGCGCCAACAACAACTACAACGCCTACAAGAGCGCCAACAGCAGCGTG
GCCAACAGCCAGAAGTTCATAGTGGGCACCAAGTTCAATGGGGTCTTCAA
GCCATCGAATGCCGCGGCCACTTGGGCAACCAATGGAAGCACCAATGGCA
ATGGCACCGCGGAGTCGGAGAACGAGGTGGCCAAGGTCGTGCTGCGACGA
CCCAAGGTGGCGGACTCACCCCCACCCGCCGAGGGCGAGGACGAGAACGT
GCCGGAGTTCATCAGGCGCCAGCGACTCATCCAGGAGCGTCTGGCCAAGG
AGAACGTGCTGGACTTTGAGAGCCGGCGCAGCGGCTACTTCACGCACGTT
ATGATCTCGCCGGACTCGCCCAATCGCACCTCGTTCGTGGAGACCATGGC
CAGTCCGGCCATTGTGCCCGCCCTCGAGATTCCCGCTCCCGTGGCCGAGA
AGGTGGAGGAGGAGGAGAAGGTGGAGGTACAGCCTCAGGTGGCCGCTGTA
ACCACCTCTGCCCTGATCACTAAACCCGAACCAGAGGACCCTGTAAGCAA
TGGACACAGTGAGGAGCCAAAGAACTCTGACGTAGGACCCGAAGAAGTGG
CCAAGGCCATTTGAGCAGTTAACCAGGCAGTGGCAGGAGAGGATGAGGCG
GAGGTGGAGCCACCCCTGAGCCAGTTCCAGAACTACTC
BS07072.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1623-PB | 1371 | CG1623-RB | 1..795 | 17..811 | 3975 | 100 | Plus |
| CG1623-PD | 1371 | CG1623-RD | 1..795 | 17..811 | 3975 | 100 | Plus |
| CG1623-PA | 1371 | CG1623-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
| CG1623-PC | 1371 | CG1623-RC | 1..795 | 17..811 | 3975 | 100 | Plus |
| CG1623-PE | 1371 | CG1623-RE | 1..795 | 17..811 | 3975 | 100 | Plus |
| CG1623-PB | 1371 | CG1623-RB | 801..842 | 817..858 | 210 | 100 | Plus |
| CG1623-PD | 1371 | CG1623-RD | 801..842 | 817..858 | 210 | 100 | Plus |
| CG1623-PA | 1371 | CG1623-RA | 801..842 | 817..858 | 210 | 100 | Plus |
| CG1623-PC | 1371 | CG1623-RC | 801..842 | 817..858 | 210 | 100 | Plus |
| CG1623-PE | 1371 | CG1623-RE | 801..842 | 817..858 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hebe-RF | 1820 | CG1623-RF | 124..1000 | 14..888 | 4290 | 99.5 | Plus |
| hebe-RE | 1825 | CG1623-RE | 129..1005 | 14..888 | 4290 | 99.5 | Plus |
| hebe-RD | 1956 | CG1623-RD | 260..1136 | 14..888 | 4290 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9828930..9829800 | 883..14 | 4230 | 99.3 | Minus |
Blast to na_te.dros performed 2015-02-12 19:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6912 | 116..281 | 154 | 58 | Plus |
BS07072.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:11 Download gff for
BS07072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1623-PC | 1..874 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:12 Download gff for
BS07072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1623-PD | 1..874 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:43 Download gff for
BS07072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hebe-RD | 254..1136 | 9..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:38:20 Download gff for
BS07072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hebe-RD | 254..1136 | 9..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:38:20 Download gff for
BS07072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9828924..9829806 | 9..888 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:43 Download gff for
BS07072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5716429..5717311 | 9..888 | 99 | | Minus |
BS07072.complete Sequence
1403 bp (1403 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635717
> BS07072.complete
GAAGTTATCAGTCGACATGGCCGAGACAATCAACAACAAGCCGAGCATAC
AGATCCGCAGCGGACTGCCCTCGCCTCTGCCGGACAAGAGTCCCTCGCCG
GCCACCAAGCTGCTGATCAGCCACGGCAAGCCCAACTTCACCATCGCCAA
GTCGCCGAAGATCGACGAGAACGGAAACGGAAACCCACTGTCCGCCCAGC
CCAGCGCCAACAACAACTACAACGCCTACAAGAGCGCCAACAGCAGCGTG
GCCAACAGCCAGAAGTTCATAGTGGGCACCAAGTTCAATGGGGTCTTCAA
GCCATCGAATGCCGCGGCCACTTGGGCAACCAATGGAAGCACCAATGGCA
ATGGCACCGCGGAGTCGGAGAACGAGGTGGCCAAGGTCGTGCTGCGACGA
CCCAAGGTGGCGGACTCACCCCCACCCGCCGAGGGCGAGGACGAGAACGT
GCCGGAGTTCATCAGGCGCCAGCGACTCATCCAGGAGCGTCTGGCCAAGG
AGAACGTGCTGGACTTTGAGAGCCGGCGCAGCGGCTACTTCACGCACGTT
ATGATCTCGCCGGACTCGCCCAATCGCACCTCGTTCGTGGAGACCATGGC
CAGTCCGGCCATTGTGCCCGCCCTCGAGATTCCCGCTCCCGTGGCCGAGA
AGGTGGAGGAGGAGGAGAAGGTGGAGGTACAGCCTCAGGTGGCCGCTGTA
ACCACCTCTGCCCTGATCACTAAACCCGAACCAGAGGACCCTGTAAGCAA
TGGACACAGTGAGGAGCCAAAGAACTCTGACGTAGGACCCGAAGAAGTGG
CCAAGGCCATTGAGCAAGTTAACCAGGCAGTGGCAGGAGAGGATGAGGCG
GAGGTGGAAGCCACCCCTGAGCCAGTTCCAGAACCTACTCCAGAGCCAGT
GGCAGCCGAACGAAAGGCGGAGGCCGTGGTAGAGGAGCCCACTCAAGCTC
CCGCAGCCGTGGAAGCCAAGGTGGAGGTGGTGGAGCCAGCTGCTCCCGTG
CAAAATGGCCAGAAGGAGGAGGAGAAGGCTGTTCCTGCCACCAATGGCCT
TAAGGAAGAGGAGGCTGCTCCTGCCACCAATGGTCATAAGGAGGAGGCGG
ATGCCATTACCATTTCGCACACCAACGGACAGAGTAGCGATGGACCCAGC
ATACCCACTCCGGATCCCAGTGGCGCCCTGGGAGTGAACTACGAACCCAA
GACCGTGGTCAGCTTCTCGCAGGAATTGGGCAGCGGGGAGAACAAGTATC
CGGATACCGTGAAGGTGGTCAGCGAGGTGCCCGCCGAATCGAATGGCGAG
CTCAAGGAGCTGACCAAGCTGAAGTTCGACATCCAGAGCGATGATCAGAA
CGAGGTCCAGGTGACGCCCGTACTGCGGGCGGAATAGAAGCTTTCTAGAC
CAT
BS07072.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hebe-RF | 1371 | CG1623-PF | 1..1371 | 17..1387 | 6855 | 100 | Plus |
| hebe-RE | 1371 | CG1623-PE | 1..1371 | 17..1387 | 6855 | 100 | Plus |
| hebe-RD | 1371 | CG1623-PD | 1..1371 | 17..1387 | 6855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hebe-RF | 1820 | CG1623-RF | 124..1500 | 14..1390 | 6885 | 100 | Plus |
| hebe-RE | 1825 | CG1623-RE | 129..1505 | 14..1390 | 6885 | 100 | Plus |
| hebe-RD | 1956 | CG1623-RD | 260..1636 | 14..1390 | 6885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9828424..9829800 | 1390..14 | 6885 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:54:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6912 | 116..281 | 154 | 58 | Plus |
BS07072.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:08 Download gff for
BS07072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1623-RE | 1..1371 | 17..1387 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:41 Download gff for
BS07072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1623-RE | 96..1478 | 9..1390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:16 Download gff for
BS07072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hebe-RD | 263..1633 | 17..1387 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:08 Download gff for
BS07072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1623-RE | 96..1478 | 9..1390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:21 Download gff for
BS07072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hebe-RD | 263..1633 | 17..1387 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:21 Download gff for
BS07072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9828427..9829797 | 17..1387 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:16 Download gff for
BS07072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5715932..5717302 | 17..1387 | 100 | | Minus |
BS07072.pep Sequence
Translation from 16 to 1386
> BS07072.pep
MAETINNKPSIQIRSGLPSPLPDKSPSPATKLLISHGKPNFTIAKSPKID
ENGNGNPLSAQPSANNNYNAYKSANSSVANSQKFIVGTKFNGVFKPSNAA
ATWATNGSTNGNGTAESENEVAKVVLRRPKVADSPPPAEGEDENVPEFIR
RQRLIQERLAKENVLDFESRRSGYFTHVMISPDSPNRTSFVETMASPAIV
PALEIPAPVAEKVEEEEKVEVQPQVAAVTTSALITKPEPEDPVSNGHSEE
PKNSDVGPEEVAKAIEQVNQAVAGEDEAEVEATPEPVPEPTPEPVAAERK
AEAVVEEPTQAPAAVEAKVEVVEPAAPVQNGQKEEEKAVPATNGLKEEEA
APATNGHKEEADAITISHTNGQSSDGPSIPTPDPSGALGVNYEPKTVVSF
SQELGSGENKYPDTVKVVSEVPAESNGELKELTKLKFDIQSDDQNEVQVT
PVLRAE*
BS07072.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hebe-PF | 456 | CG1623-PF | 1..456 | 1..456 | 2320 | 100 | Plus |
| hebe-PE | 456 | CG1623-PE | 1..456 | 1..456 | 2320 | 100 | Plus |
| hebe-PD | 456 | CG1623-PD | 1..456 | 1..456 | 2320 | 100 | Plus |
| hebe-PB | 456 | CG1623-PB | 1..456 | 1..456 | 2320 | 100 | Plus |
