Clone Sequence Records
BS07074.3prime Sequence
943 bp (841 high quality bases) assembled on 2006-01-06
> BS07074.3prime
ATGGTCTAGAAAGCTTTCAGTGAAATTCAAATTGGTATCCGCGGTCCACA
AAGCTCAGACCGCGTTCCGAGTCGACTGGAAAGTCGGCGGTGAAGACAAT
ATATCCTCTATATTCCAAAGAGCTCTTTAGGTTCGCTCTATCCACAAAGT
CCTCAAAGCCACTTAGGTCGTAGTAGAGCTTCAGAGGTGGCGAACGTCCA
ACTCCCGTCTTCTGCTTGAACGGCTCCCGCCGCTTAAGAATACTCAAGGC
CCGTGGCAAAAATGTTGGCGTCAGATTTCGGCAGTAGGACACGTCGAGGT
GTTCCAATCGTGGACAGAGTTCCACGAATTCTAAGAGGATTTCGTCGCTT
AGGTCATTCCAGTTGCGCACGCAGAGCAGCTGCAGCTCTGTCATACAGGT
ATAGCGCTTTAGGTAGTCTGCCGAATGAGTCCAGCTGCAAATGGCCAGGC
GCTTCAGCCTGCGATGCGTCCAGATGGGCAGCTTCTCATCCCAGCCCGGT
TCAAGGGGCATATAGTACCCGTCCACGGCAAAGCCGACGATGTCCTTGGC
CTTGAAAGCCATGATCTCGTAGAACTCGCTGACCTCGCGGATCTTGTGGT
CATAGCTATCCGGACTGACCAGCGGGGGGATATGCCACTCGTTGTCCAGC
AGCACCACCAGTTTCCTGAGGGAGGGCAGCTCCAGAACGGCGGGTAGAAT
GGGTTTCAAGGTGGCCAGATTGAGCTTAAGATCAGTGAGGTTCTTAAAGC
TCTGCAGGCAGTTTCCCAGCTGAAGTTTACTGATCATATCGTACGTCCTA
ATGTCCAGGACCCGAAGATCGTGCAGCGTGCGGCACACCTCGTCCAGGTA
CTTCTGCTGCAGCTCAAACGCCTTGTGCTGGTCCTCGTAGAGGTGCAGCT
CCTGCANGTGCTGGAAGTTGGATAGGTACCGCCCGTCGATGGG
BS07074.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7148-PA | 1365 | CG7148-RA | 439..1365 | 943..17 | 4616 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7148-RA | 1594 | CG7148-RA | 596..1522 | 943..17 | 4624 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21830790..21831487 | 134..831 | 3490 | 100 | Plus |
3L | 28110227 | 3L | 21830616..21830733 | 17..134 | 590 | 100 | Plus |
3L | 28110227 | 3L | 21831546..21831658 | 831..943 | 554 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:01:39 has no hits.
BS07074.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:15 Download gff for
BS07074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-PA | 439..1365 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:16 Download gff for
BS07074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-PA | 439..1365 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:09:56 Download gff for
BS07074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 596..1525 | 12..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:31 Download gff for
BS07074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 596..1525 | 12..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:31 Download gff for
BS07074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21830613..21830732 | 12..133 | 97 | <- | Plus |
3L | 21830790..21831486 | 134..830 | 100 | <- | Plus |
3L | 21831546..21831658 | 831..943 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:09:56 Download gff for
BS07074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21823713..21823832 | 12..133 | 97 | <- | Plus |
arm_3L | 21823890..21824586 | 134..830 | 100 | <- | Plus |
arm_3L | 21824646..21824758 | 831..943 | 99 | | Plus |
BS07074.5prime Sequence
940 bp (843 high quality bases) assembled on 2006-01-06
> BS07074.5prime
GAAGTTATCAGTCGACATGGCTTCCGAGCCGAGATCCCTAATTCTGCAAT
TGGACGACGACTGTCTGGCCGAGATTTTCGATCGCTTGCAGGACCTGCCG
TCGGAAGTGTCCTTCGCGAGGACTTGCCGGCGAGTGCAGTACATATGTCT
GAGCAAGTGGCGCACCAGCCATGCCTACGAGCAACTGGATCTGGAGAAGT
GGCGGGTACTGTTACCCAATCATGAAGACCTGGTCTACTTCCTAACCCAA
ATGCGTCCGTACATCAGAGAAATGGGCGGCAGCAGCTGTCTGTGCTCCAT
TCTAAAAGATCTGGACGAAATGCACATTGCAGAGCTGCCCATGGTGACCA
GCTTCTACTACGACCCAGACGGCGTCGATTGCTATCCCACGAACCGAAGC
ATCCGCAAGCTGGCCCGCCTGCTGCCGGGCTTGAAAAAGTTGCGCCTTAC
CACACCCATCGACGGGCGGTACCTATCCAACTTCCAGCACCTGCAGGAGC
TGCACCTCTACGAGGACCAGCACAAGGCGTTTGAGCTGCAGCAGAAGTAC
CTGGACGAGGTGTGCCGCACGCTGCACGATCTTCGGGTCCTGGACATTAG
GACGTACGATATGATCAGTAAACTTCAGCTGGGAAACTGCCTGCAGAGCT
TTAAGAACCTCACTGATCTTAAGCTCAATCTGGCCACCTTGAAACCCATT
CTACCCGCCGTTCTGGAGCTGCCCTCCCTCAGGAAACTGGTGGTGCTGCT
GGACAACGAGTGGCATATCCCCCCGCTGGTCAGTCCGGATAGCTATGACC
ACAAGATCCGCGAGGTCAGCGAGTTCTACGAGATCATGGCTTTCAGGGCC
AGGACATCGTCGGGCTTGCCGTGGACGGGTACTATATGCCCCTTTGAACC
GGGCTGGGATGAGAAGCTGCCCATCTGGACGCATCGCAGG
BS07074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7148-PA | 1365 | CG7148-RA | 1..835 | 17..851 | 4125 | 99.7 | Plus |
CG7148-PA | 1365 | CG7148-RA | 878..924 | 894..940 | 235 | 100 | Plus |
CG7148-PA | 1365 | CG7148-RA | 836..879 | 851..894 | 170 | 95.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:25:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7148-RA | 1594 | CG7148-RA | 157..1081 | 16..940 | 4520 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21831546..21832097 | 567..16 | 2745 | 99.8 | Minus |
3L | 28110227 | 3L | 21831114..21831487 | 940..567 | 1730 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:25:50 has no hits.
BS07074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:16 Download gff for
BS07074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:17 Download gff for
BS07074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:28:10 Download gff for
BS07074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 157..1081 | 16..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:55:41 Download gff for
BS07074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 157..1081 | 16..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:55:41 Download gff for
BS07074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21831114..21831486 | 568..940 | 98 | <- | Minus |
3L | 21831546..21832097 | 16..567 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:28:10 Download gff for
BS07074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21824214..21824586 | 568..940 | 98 | <- | Minus |
arm_3L | 21824646..21825197 | 16..567 | 99 | -> | Minus |
BS07074.complete Sequence
1397 bp (1397 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635718
> BS07074.complete
GAAGTTATCAGTCGACATGGCTTCCGAGCCGAGATCCCTAATTCTGCAAT
TGGACGACGACTGTCTGGCCGAGATTTTCGATCGCTTGCAGGACCTGCCG
TCGGAAGTGTCCTTCGCGAGGACTTGCCGGCGAGTGCAGTACATATGTCT
GAGCAAGTGGCGCACCAGCCATGCCTACGAGCAACTGGATCTGGAGAAGT
GGCGGGTACTGTTACCCAATCATGAAGACCTGGTCTACTTCCTAACCCAA
ATGCGTCCGTACATCAGAGAAATGGGCGGCAGCAGCTGTCTGTGCTCCAT
TCTAAAAGATCTGGACGAAATGCACATTGCAGAGCTGCCCATGGTGACCA
GCTTCTACTACGACCCAGACGGCGTCGATTGCTATCCCACGAACCGAAGC
ATCCGCAAGCTGGCCCGCCTGCTGCCGGGCTTGAAAAAGTTGCGCCTTAC
CACACCCATCGACGGGCGGTACCTATCCAACTTCCAGCACCTGCAGGAGC
TGCACCTCTACGAGGACCAGCACAAGGCGTTTGAGCTGCAGCAGAAGTAC
CTGGACGAGGTGTGCCGCACGCTGCACGATCTTCGGGTCCTGGACATTAG
GACGTACGATATGATCAGTAAACTTCAGCTGGGAAACTGCCTGCAGAGCT
TTAAGAACCTCACTGATCTTAAGCTCAATCTGGCCACCTTGAAACCCATT
CTACCCGCCGTTCTGGAGCTGCCCTCCCTCAGGAAACTGGTGGTGCTGCT
GGACAACGAGTGGCATATCCCCCCGCTGGTCAGTCCGGATAGCTATGACC
ACAAGATCCGCGAGGTCAGCGAGTTCTACGAGATCATGGCTTTCAAGGCC
AAGGACATCGTCGGCTTTGCCGTGGACGGGTACTATATGCCCCTTGAACC
GGGCTGGGATGAGAAGCTGCCCATCTGGACGCATCGCAGGCTGAAGCGCC
TGGCCATTTGCAGCTGGACTCATTCGGCAGACTACCTAAAGCGCTATACC
TGTATGACAGAGCTGCAGCTGCTCTGCGTGCGCAACTGGAATGACCTAAG
CGACGAAATCCTCTTAGAATTCGTGGAACTCTGTCCACGATTGGAACACC
TCGACGTGTCCTACTGCCGAAATCTGACGCCAACATTTTTGCCACGGGCC
TTGAGTATTCTTAAGCGGCGGGAGCCGTTCAAGCAGAAGACGGGAGTTGG
ACGTTCGCCACCTCTGAAGCTCTACTACGACCTAAGTGGCTTTGAGGACT
TTGTGGATAGAGCGAACCTAAAGAGCTCTTTGGAATATAGAGGATATATT
GTCTTCACCGCCGACTTTCCAGTCGACTCGGAACGCGGTCTGAGCTTTGT
GGACCGCGGATACCAATTTGAATTTCACTGAAAGCTTTCTAGACCAT
BS07074.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7148-RA | 1365 | CG7148-PA | 1..1365 | 17..1381 | 6810 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7148-RA | 1594 | CG7148-RA | 157..1522 | 16..1381 | 6815 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21830790..21831487 | 1264..567 | 3490 | 100 | Minus |
3L | 28110227 | 3L | 21831546..21832097 | 567..16 | 2745 | 99.8 | Minus |
3L | 28110227 | 3L | 21830616..21830733 | 1381..1264 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:37:09 has no hits.
BS07074.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:11 Download gff for
BS07074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 1..1365 | 17..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:25 Download gff for
BS07074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 109..1477 | 16..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:43 Download gff for
BS07074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 158..1521 | 17..1380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:12 Download gff for
BS07074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 109..1477 | 16..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:43 Download gff for
BS07074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7148-RA | 158..1521 | 17..1380 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:43 Download gff for
BS07074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21830617..21830732 | 1265..1380 | 100 | <- | Minus |
3L | 21830790..21831486 | 568..1264 | 100 | <- | Minus |
3L | 21831546..21832096 | 17..567 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:43 Download gff for
BS07074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21823717..21823832 | 1265..1380 | 100 | <- | Minus |
arm_3L | 21823890..21824586 | 568..1264 | 100 | <- | Minus |
arm_3L | 21824646..21825196 | 17..567 | 99 | | Minus |
BS07074.pep Sequence
Translation from 16 to 1380
> BS07074.pep
MASEPRSLILQLDDDCLAEIFDRLQDLPSEVSFARTCRRVQYICLSKWRT
SHAYEQLDLEKWRVLLPNHEDLVYFLTQMRPYIREMGGSSCLCSILKDLD
EMHIAELPMVTSFYYDPDGVDCYPTNRSIRKLARLLPGLKKLRLTTPIDG
RYLSNFQHLQELHLYEDQHKAFELQQKYLDEVCRTLHDLRVLDIRTYDMI
SKLQLGNCLQSFKNLTDLKLNLATLKPILPAVLELPSLRKLVVLLDNEWH
IPPLVSPDSYDHKIREVSEFYEIMAFKAKDIVGFAVDGYYMPLEPGWDEK
LPIWTHRRLKRLAICSWTHSADYLKRYTCMTELQLLCVRNWNDLSDEILL
EFVELCPRLEHLDVSYCRNLTPTFLPRALSILKRREPFKQKTGVGRSPPL
KLYYDLSGFEDFVDRANLKSSLEYRGYIVFTADFPVDSERGLSFVDRGYQ
FEFH*
BS07074.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7148-PA | 454 | CG7148-PA | 1..454 | 1..454 | 2419 | 100 | Plus |
CG14317-PA | 448 | CG14317-PA | 43..374 | 19..362 | 247 | 25.2 | Plus |