Clone BS07076 Report

Search the DGRC for BS07076

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptS-Lap4-RA
Protein status:BS07076.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07076.3prime Sequence

885 bp (841 high quality bases) assembled on 2006-01-06

> BS07076.3prime
ATGGTCTAGAAAGCTTTCACTTTTGGTTGGCGGGACAGGCCATTTGGTAG
AGAAACTGCGCCAGAGTGCGAGTTGGCCTGCCTGTCATGTACTTTGCGGT
GAGATAGGGTACCAGTCCATACTTGGTTAGCAGTCCAGTGCCCCGGGTGT
CCAGATGAGCCCAATCCACACAGGGTACCAATTCGTGGAGTACCGCTGCC
GCCAAACAGGAATTCGCCAGTCCTCGACCATCATTGCTTAAATCATATCC
CATTTCATCGGTGATTTGTTTCCTATAATAATTCCACAATGGCAAACGCC
AAACTCGATCGCCAGTCAAAGCTCCTGCGGACTGGAACTGCTTCCAGATG
TAATGGGAATTGGAGAATATACCGGTGGCTCCGCCGCCGAAAGCCTTCTT
CACACCTGAACCCAAGGTGGCCACATCGACTACCAAGCGAGGCTTGTATG
TGCTCTGTCCGTAGAGCAAGGGATCTGCCATTACGACGACTCCGGCCTTG
TCCAGATTTCGTACAGCCATCGATTTGTGATTCATTAGGGTGACCACATC
GCCTGGCTTACAGGCCATTCCCGATGGCATGTTCTCGCACAGCGGGATGA
TGCAGCAGACATTGATGGGCAGGGCCAGTGCCGCAACGCAACGCATCATG
GCCACACAGGATGCAGCTCCCGACATGCAAGCCCTGTACTCCTCCATTCC
CCTGCATTTCCTCAGATTCATGGCGCCCGAGTTGAAGGTAATGCCCTTGC
CCAGGAACAAAATGGGTTTGTCCTCGGGATTGGTGCCGCAATAGGTGATC
TCCATCAGAACCGGTGGCTCACAGCTGCCCTTGGCAATCATGAGGAACGA
ATGAAGACGCTGCTGTTTCATCCACTCCATGGTGC

BS07076.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32064-PA 1575 CG32064-RA 707..1575 885..17 4295 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap4-RA 2074 CG32064-RA 1020..1889 885..16 4320 99.8 Minus
S-Lap7-RB 2030 CG13340-RB 1022..1874 885..33 995 74.7 Minus
S-Lap7-RA 2122 CG13340-RA 1022..1874 885..33 995 74.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10491880..10492749 885..16 4320 99.8 Minus
2R 25286936 2R 13778372..13779224 33..885 995 74.4 Plus
3L 28110227 3L 10467251..10467804 885..332 280 70.9 Minus
2R 25286936 2R 13597896..13598075 595..416 195 73.9 Minus
2R 25286936 2R 13597639..13597760 852..731 190 77 Minus
Blast to na_te.dros performed on 2015-02-06 12:03:11 has no hits.

BS07076.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:19 Download gff for BS07076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32064-PA 707..1575 17..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:21 Download gff for BS07076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32064-PA 707..1575 17..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:40:26 Download gff for BS07076.3prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap4-RA 1020..1891 12..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:49:12 Download gff for BS07076.3prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap4-RA 1020..1891 12..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:49:12 Download gff for BS07076.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10491880..10492751 12..885 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:40:26 Download gff for BS07076.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10484980..10485851 12..885 99   Minus

BS07076.5prime Sequence

970 bp (833 high quality bases) assembled on 2006-01-06

> BS07076.5prime
GAAGTTATCAGTCGACATGAACAAACTACGTAATGTTCTGAAGTCAGTAG
TCCAGCGTCGTCTGCCCGTTTCCCATTTGATCCAAATACGTACCGCCTGC
GGTGGTGAATCCAAGTCCTCCAAGGGTCTTGTGGTCGGTGTTTATCAGAA
GGAGAACGATAATGACCCAAAGCTAACGCCAGCTGGCGAAAAGGTCAATG
ATCGGCTGCATGGCAAGTTGCAGGAGATGATTTGCCAGAGCAAAATCACT
GGCCACTTGGGCAGGGGCAAGATATTCAACAACATAGATCCAGAGTTTCG
CAGTATGGCAGTGGTTGGTGTCGGCCTCGAGGGCATCGGCTTCAACGAAC
TGGAAATGCTCGATGAGGGCATGGAGAATGTACGTGTGGCGGCTGGAATT
GGAGCCCGATCCTTGCAAGAGATTGGCGTTTCGGAAGTCTTTGTAGATGG
CATGGACTATGCCGAACAGGCGGCCGAGGGCGCCGTTCTGGCCGTTTGGC
GATATTGTGACATGAACTCCAAGAGGAAGCCACCACACATCCCCAAACTG
GAGCTGTACGAATCTCCGGACTATGAAGGTTGGACCCGGGGTGTCTTCAA
GGCGGAGGCTCAGAATTTAGCTCGCAGGATGTGTGATACACCTGCCTGTT
GCATGACACCAACGCTTTTTGCCCAGGCCACGGTAGATGCGCTGTGCCCC
TGTGGCATTACCGTCGAAATCCGCACCATGGAGTGGATTGAACAGCAGCG
TCTTCATTCGTTCCTCATGATTGCCAAGGGCAGCTGTGAGCCACCGGTTC
TGATGGAGATCACCTATTGCGGCACCCATCCCGAGGACAAACCCATTTTG
TTCCTGGGCAAGGGCATTACCTTCACTCGGGCGCCATGAATCTGAGGAAA
TGCAGGGGAATGGAGGAGTACAGGGCTTGCATGTCGGGAGCTGCATCCTG
TGTGGCCATGATGCGTTGCG

BS07076.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32064-PA 1575 CG32064-RA 1..859 17..875 4270 99.8 Plus
CG32064-PA 1575 CG32064-RA 860..955 875..970 480 100 Plus
CG13340-PA 1584 CG13340-RA 319..372 323..376 145 90.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap4-RA 2074 CG32064-RA 314..1268 17..970 4735 99.8 Plus
S-Lap7-RB 2030 CG13340-RB 565..1269 266..969 755 74.3 Plus
S-Lap7-RA 2122 CG13340-RA 565..1269 266..969 755 74.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10491174..10492128 17..970 4710 99.8 Plus
2R 25286936 2R 13778977..13779636 969..311 715 74.2 Minus
3L 28110227 3L 10466702..10467403 174..875 585 72.2 Plus
2R 25286936 2R 13597189..13597747 306..864 335 70.7 Plus
2R 25286936 2R 16491863..16492285 442..864 210 70 Plus
Blast to na_te.dros performed on 2015-02-12 04:26:00 has no hits.

BS07076.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:20 Download gff for BS07076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32064-PA 1..955 17..970 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:22 Download gff for BS07076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32064-PA 1..955 17..970 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:44 Download gff for BS07076.5prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap4-RA 309..1268 12..970 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:41 Download gff for BS07076.5prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap4-RA 309..1268 12..970 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:41 Download gff for BS07076.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10491169..10492128 12..970 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:44 Download gff for BS07076.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10484269..10485228 12..970 99   Plus

BS07076.complete Sequence

1607 bp (1607 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635719

> BS07076.complete
GAAGTTATCAGTCGACATGAACAAACTACGTAATGTTCTGAAGTCAGTAG
TCCAGCGTCGTCTGCCCGTTTCCCATTTGATCCAAATACGTACCGCCTGC
GGTGGTGAATCCAAGTCCTCCAAGGGTCTTGTGGTCGGTGTTTATCAGAA
GGAGAACGATAATGACCCAAAGCTAACGCCAGCTGGCGAAAAGGTCAATG
ATCGGCTGCATGGCAAGTTGCAGGAGATGATTTGCCAGAGCAAAATCACT
GGCCACTTGGGCAGGGGCAAGATATTCAACAACATAGATCCAGAGTTTCG
CAGTATGGCAGTGGTTGGTGTCGGCCTCGAGGGCATCGGCTTCAACGAAC
TGGAAATGCTCGATGAGGGCATGGAGAATGTACGTGTGGCGGCTGGAATT
GGAGCCCGATCCTTGCAAGAGATTGGCGTTTCGGAAGTCTTTGTAGATGG
CATGGACTATGCCGAACAGGCGGCCGAGGGCGCCGTTCTGGCCGTTTGGC
GATATTGTGACATGAACTCCAAGAGGAAGCCACCACACATCCCCAAACTG
GAGCTGTACGAATCTCCGGACTATGAAGGTTGGACCCGGGGTGTCTTCAA
GGCGGAGGCTCAGAATTTAGCTCGCAGGATGTGTGATACACCTGCCTGTT
GCATGACACCAACGCTTTTTGCCCAGGCCACGGTAGATGCGCTGTGCCCC
TGTGGCATTACCGTCGAAATCCGCACCATGGAGTGGATTGAACAGCAGCG
TCTTCATTCGTTCCTCATGATTGCCAAGGGCAGCTGTGAGCCACCGGTTC
TGATGGAGATCACCTATTGCGGCACCAATCCCGAGGACAAACCCATTTTG
TTCCTGGGCAAGGGCATTACCTTCAACTCGGGCGCCATGAATCTGAGGAA
ATGCAGGGGAATGGAGGAGTACAGGGCTTGCATGTCGGGAGCTGCATCCT
GTGTGGCCATGATGCGTTGCGTTGCGGCACTGGCCCTGCCCATCAATGTC
TGCTGCATCATCCCGCTGTGCGAGAACATGCCATCGGGAATGGCCTGTAA
GCCAGGCGATGTGGTCACCCTAATGAATCACAAATCGATGGCTGTACGAA
ATCTGGACAAGGCCGGAGTCGTCGTAATGGCAGATCCCTTGCTCTACGGA
CAGAGCACATACAAGCCTCGCTTGGTAGTCGATGTGGCCACCTTGGGTTC
AGGTGTGAAGAAGGCTTTCGGCGGCGGAGCCACCGGTATATTCTCCAATT
CCCATTACATCTGGAAGCAGTTCCAGTCCGCAGGAGCTTTGACTGGCGAT
CGAGTTTGGCGTTTGCCATTGTGGAATTATTATAGGAAACAAATCACCGA
TGAAATGGGATATGATTTAAGCAATGATGGTCGAGGACTGGCGAATTCCT
GTTTGGCGGCAGCGGTACTCCACGAATTGGTACCCTGTGTGGATTGGGCT
CATCTGGACACCCGGGGCACTGGACTGCTAACCAAGTATGGACTGGTACC
CTATCTCACCGCAAAGTACATGACAGGCAGGCCAACTCGCACTCTGGCGC
AGTTTCTCTACCAAATGGCCTGTCCCGCCAACCAAAAGTGAAAGCTTTCT
AGACCAT

BS07076.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap4-RA 1575 CG32064-PA 1..1575 17..1591 7875 100 Plus
S-Lap7-RB 1584 CG13340-PB 307..1571 311..1575 1375 73.9 Plus
S-Lap7-RA 1584 CG13340-PA 307..1571 311..1575 1375 73.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap4-RA 2074 CG32064-RA 314..1889 17..1592 7880 100 Plus
S-Lap7-RB 2030 CG13340-RB 610..1874 311..1575 1375 73.9 Plus
S-Lap7-RA 2122 CG13340-RA 610..1874 311..1575 1375 73.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10491174..10492749 17..1592 7880 100 Plus
2R 25286936 2R 13778372..13779636 1575..311 1375 73.9 Minus
3L 28110227 3L 10466702..10467804 174..1276 640 71 Plus
2R 25286936 2R 13597189..13597760 306..877 340 70.6 Plus
2R 25286936 2R 16491863..16492298 442..877 215 70 Plus
2R 25286936 2R 13597896..13598075 1013..1192 195 73.9 Plus
Blast to na_te.dros performed on 2014-11-28 00:33:55 has no hits.

BS07076.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:09 Download gff for BS07076.complete
Subject Subject Range Query Range Percent Splice Strand
CG32064-RA 1..1575 17..1591 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:43 Download gff for BS07076.complete
Subject Subject Range Query Range Percent Splice Strand
CG32064-RA 309..1891 12..1596 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:46 Download gff for BS07076.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap4-RA 314..1887 17..1590 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:10 Download gff for BS07076.complete
Subject Subject Range Query Range Percent Splice Strand
CG32064-RA 309..1891 12..1596 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:43 Download gff for BS07076.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap4-RA 314..1887 17..1590 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:43 Download gff for BS07076.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10491174..10492747 17..1590 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:46 Download gff for BS07076.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10484274..10485847 17..1590 100   Plus

BS07076.pep Sequence

Translation from 16 to 1590

> BS07076.pep
MNKLRNVLKSVVQRRLPVSHLIQIRTACGGESKSSKGLVVGVYQKENDND
PKLTPAGEKVNDRLHGKLQEMICQSKITGHLGRGKIFNNIDPEFRSMAVV
GVGLEGIGFNELEMLDEGMENVRVAAGIGARSLQEIGVSEVFVDGMDYAE
QAAEGAVLAVWRYCDMNSKRKPPHIPKLELYESPDYEGWTRGVFKAEAQN
LARRMCDTPACCMTPTLFAQATVDALCPCGITVEIRTMEWIEQQRLHSFL
MIAKGSCEPPVLMEITYCGTNPEDKPILFLGKGITFNSGAMNLRKCRGME
EYRACMSGAASCVAMMRCVAALALPINVCCIIPLCENMPSGMACKPGDVV
TLMNHKSMAVRNLDKAGVVVMADPLLYGQSTYKPRLVVDVATLGSGVKKA
FGGGATGIFSNSHYIWKQFQSAGALTGDRVWRLPLWNYYRKQITDEMGYD
LSNDGRGLANSCLAAAVLHELVPCVDWAHLDTRGTGLLTKYGLVPYLTAK
YMTGRPTRTLAQFLYQMACPANQK*

BS07076.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap4-PA 524 CG32064-PA 1..524 1..524 2783 100 Plus
S-Lap7-PB 527 CG13340-PB 1..524 1..520 2118 74.5 Plus
S-Lap7-PA 527 CG13340-PA 1..524 1..520 2118 74.5 Plus
S-Lap3-PD 535 CG32063-PD 38..535 27..524 1961 71.3 Plus
S-Lap3-PC 535 CG32063-PC 38..535 27..524 1961 71.3 Plus