Clone Sequence Records
BS07076.3prime Sequence
885 bp (841 high quality bases) assembled on 2006-01-06
> BS07076.3prime
ATGGTCTAGAAAGCTTTCACTTTTGGTTGGCGGGACAGGCCATTTGGTAG
AGAAACTGCGCCAGAGTGCGAGTTGGCCTGCCTGTCATGTACTTTGCGGT
GAGATAGGGTACCAGTCCATACTTGGTTAGCAGTCCAGTGCCCCGGGTGT
CCAGATGAGCCCAATCCACACAGGGTACCAATTCGTGGAGTACCGCTGCC
GCCAAACAGGAATTCGCCAGTCCTCGACCATCATTGCTTAAATCATATCC
CATTTCATCGGTGATTTGTTTCCTATAATAATTCCACAATGGCAAACGCC
AAACTCGATCGCCAGTCAAAGCTCCTGCGGACTGGAACTGCTTCCAGATG
TAATGGGAATTGGAGAATATACCGGTGGCTCCGCCGCCGAAAGCCTTCTT
CACACCTGAACCCAAGGTGGCCACATCGACTACCAAGCGAGGCTTGTATG
TGCTCTGTCCGTAGAGCAAGGGATCTGCCATTACGACGACTCCGGCCTTG
TCCAGATTTCGTACAGCCATCGATTTGTGATTCATTAGGGTGACCACATC
GCCTGGCTTACAGGCCATTCCCGATGGCATGTTCTCGCACAGCGGGATGA
TGCAGCAGACATTGATGGGCAGGGCCAGTGCCGCAACGCAACGCATCATG
GCCACACAGGATGCAGCTCCCGACATGCAAGCCCTGTACTCCTCCATTCC
CCTGCATTTCCTCAGATTCATGGCGCCCGAGTTGAAGGTAATGCCCTTGC
CCAGGAACAAAATGGGTTTGTCCTCGGGATTGGTGCCGCAATAGGTGATC
TCCATCAGAACCGGTGGCTCACAGCTGCCCTTGGCAATCATGAGGAACGA
ATGAAGACGCTGCTGTTTCATCCACTCCATGGTGC
BS07076.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32064-PA | 1575 | CG32064-RA | 707..1575 | 885..17 | 4295 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap4-RA | 2074 | CG32064-RA | 1020..1889 | 885..16 | 4320 | 99.8 | Minus |
S-Lap7-RB | 2030 | CG13340-RB | 1022..1874 | 885..33 | 995 | 74.7 | Minus |
S-Lap7-RA | 2122 | CG13340-RA | 1022..1874 | 885..33 | 995 | 74.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10491880..10492749 | 885..16 | 4320 | 99.8 | Minus |
2R | 25286936 | 2R | 13778372..13779224 | 33..885 | 995 | 74.4 | Plus |
3L | 28110227 | 3L | 10467251..10467804 | 885..332 | 280 | 70.9 | Minus |
2R | 25286936 | 2R | 13597896..13598075 | 595..416 | 195 | 73.9 | Minus |
2R | 25286936 | 2R | 13597639..13597760 | 852..731 | 190 | 77 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:03:11 has no hits.
BS07076.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:19 Download gff for
BS07076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32064-PA | 707..1575 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:21 Download gff for
BS07076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32064-PA | 707..1575 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:40:26 Download gff for
BS07076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap4-RA | 1020..1891 | 12..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:49:12 Download gff for
BS07076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap4-RA | 1020..1891 | 12..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:49:12 Download gff for
BS07076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10491880..10492751 | 12..885 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:40:26 Download gff for
BS07076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10484980..10485851 | 12..885 | 99 | | Minus |
BS07076.5prime Sequence
970 bp (833 high quality bases) assembled on 2006-01-06
> BS07076.5prime
GAAGTTATCAGTCGACATGAACAAACTACGTAATGTTCTGAAGTCAGTAG
TCCAGCGTCGTCTGCCCGTTTCCCATTTGATCCAAATACGTACCGCCTGC
GGTGGTGAATCCAAGTCCTCCAAGGGTCTTGTGGTCGGTGTTTATCAGAA
GGAGAACGATAATGACCCAAAGCTAACGCCAGCTGGCGAAAAGGTCAATG
ATCGGCTGCATGGCAAGTTGCAGGAGATGATTTGCCAGAGCAAAATCACT
GGCCACTTGGGCAGGGGCAAGATATTCAACAACATAGATCCAGAGTTTCG
CAGTATGGCAGTGGTTGGTGTCGGCCTCGAGGGCATCGGCTTCAACGAAC
TGGAAATGCTCGATGAGGGCATGGAGAATGTACGTGTGGCGGCTGGAATT
GGAGCCCGATCCTTGCAAGAGATTGGCGTTTCGGAAGTCTTTGTAGATGG
CATGGACTATGCCGAACAGGCGGCCGAGGGCGCCGTTCTGGCCGTTTGGC
GATATTGTGACATGAACTCCAAGAGGAAGCCACCACACATCCCCAAACTG
GAGCTGTACGAATCTCCGGACTATGAAGGTTGGACCCGGGGTGTCTTCAA
GGCGGAGGCTCAGAATTTAGCTCGCAGGATGTGTGATACACCTGCCTGTT
GCATGACACCAACGCTTTTTGCCCAGGCCACGGTAGATGCGCTGTGCCCC
TGTGGCATTACCGTCGAAATCCGCACCATGGAGTGGATTGAACAGCAGCG
TCTTCATTCGTTCCTCATGATTGCCAAGGGCAGCTGTGAGCCACCGGTTC
TGATGGAGATCACCTATTGCGGCACCCATCCCGAGGACAAACCCATTTTG
TTCCTGGGCAAGGGCATTACCTTCACTCGGGCGCCATGAATCTGAGGAAA
TGCAGGGGAATGGAGGAGTACAGGGCTTGCATGTCGGGAGCTGCATCCTG
TGTGGCCATGATGCGTTGCG
BS07076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32064-PA | 1575 | CG32064-RA | 1..859 | 17..875 | 4270 | 99.8 | Plus |
CG32064-PA | 1575 | CG32064-RA | 860..955 | 875..970 | 480 | 100 | Plus |
CG13340-PA | 1584 | CG13340-RA | 319..372 | 323..376 | 145 | 90.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap4-RA | 2074 | CG32064-RA | 314..1268 | 17..970 | 4735 | 99.8 | Plus |
S-Lap7-RB | 2030 | CG13340-RB | 565..1269 | 266..969 | 755 | 74.3 | Plus |
S-Lap7-RA | 2122 | CG13340-RA | 565..1269 | 266..969 | 755 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10491174..10492128 | 17..970 | 4710 | 99.8 | Plus |
2R | 25286936 | 2R | 13778977..13779636 | 969..311 | 715 | 74.2 | Minus |
3L | 28110227 | 3L | 10466702..10467403 | 174..875 | 585 | 72.2 | Plus |
2R | 25286936 | 2R | 13597189..13597747 | 306..864 | 335 | 70.7 | Plus |
2R | 25286936 | 2R | 16491863..16492285 | 442..864 | 210 | 70 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:26:00 has no hits.
BS07076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:20 Download gff for
BS07076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32064-PA | 1..955 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:22 Download gff for
BS07076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32064-PA | 1..955 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:44 Download gff for
BS07076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap4-RA | 309..1268 | 12..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:41 Download gff for
BS07076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap4-RA | 309..1268 | 12..970 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:41 Download gff for
BS07076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10491169..10492128 | 12..970 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:44 Download gff for
BS07076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10484269..10485228 | 12..970 | 99 | | Plus |
BS07076.complete Sequence
1607 bp (1607 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635719
> BS07076.complete
GAAGTTATCAGTCGACATGAACAAACTACGTAATGTTCTGAAGTCAGTAG
TCCAGCGTCGTCTGCCCGTTTCCCATTTGATCCAAATACGTACCGCCTGC
GGTGGTGAATCCAAGTCCTCCAAGGGTCTTGTGGTCGGTGTTTATCAGAA
GGAGAACGATAATGACCCAAAGCTAACGCCAGCTGGCGAAAAGGTCAATG
ATCGGCTGCATGGCAAGTTGCAGGAGATGATTTGCCAGAGCAAAATCACT
GGCCACTTGGGCAGGGGCAAGATATTCAACAACATAGATCCAGAGTTTCG
CAGTATGGCAGTGGTTGGTGTCGGCCTCGAGGGCATCGGCTTCAACGAAC
TGGAAATGCTCGATGAGGGCATGGAGAATGTACGTGTGGCGGCTGGAATT
GGAGCCCGATCCTTGCAAGAGATTGGCGTTTCGGAAGTCTTTGTAGATGG
CATGGACTATGCCGAACAGGCGGCCGAGGGCGCCGTTCTGGCCGTTTGGC
GATATTGTGACATGAACTCCAAGAGGAAGCCACCACACATCCCCAAACTG
GAGCTGTACGAATCTCCGGACTATGAAGGTTGGACCCGGGGTGTCTTCAA
GGCGGAGGCTCAGAATTTAGCTCGCAGGATGTGTGATACACCTGCCTGTT
GCATGACACCAACGCTTTTTGCCCAGGCCACGGTAGATGCGCTGTGCCCC
TGTGGCATTACCGTCGAAATCCGCACCATGGAGTGGATTGAACAGCAGCG
TCTTCATTCGTTCCTCATGATTGCCAAGGGCAGCTGTGAGCCACCGGTTC
TGATGGAGATCACCTATTGCGGCACCAATCCCGAGGACAAACCCATTTTG
TTCCTGGGCAAGGGCATTACCTTCAACTCGGGCGCCATGAATCTGAGGAA
ATGCAGGGGAATGGAGGAGTACAGGGCTTGCATGTCGGGAGCTGCATCCT
GTGTGGCCATGATGCGTTGCGTTGCGGCACTGGCCCTGCCCATCAATGTC
TGCTGCATCATCCCGCTGTGCGAGAACATGCCATCGGGAATGGCCTGTAA
GCCAGGCGATGTGGTCACCCTAATGAATCACAAATCGATGGCTGTACGAA
ATCTGGACAAGGCCGGAGTCGTCGTAATGGCAGATCCCTTGCTCTACGGA
CAGAGCACATACAAGCCTCGCTTGGTAGTCGATGTGGCCACCTTGGGTTC
AGGTGTGAAGAAGGCTTTCGGCGGCGGAGCCACCGGTATATTCTCCAATT
CCCATTACATCTGGAAGCAGTTCCAGTCCGCAGGAGCTTTGACTGGCGAT
CGAGTTTGGCGTTTGCCATTGTGGAATTATTATAGGAAACAAATCACCGA
TGAAATGGGATATGATTTAAGCAATGATGGTCGAGGACTGGCGAATTCCT
GTTTGGCGGCAGCGGTACTCCACGAATTGGTACCCTGTGTGGATTGGGCT
CATCTGGACACCCGGGGCACTGGACTGCTAACCAAGTATGGACTGGTACC
CTATCTCACCGCAAAGTACATGACAGGCAGGCCAACTCGCACTCTGGCGC
AGTTTCTCTACCAAATGGCCTGTCCCGCCAACCAAAAGTGAAAGCTTTCT
AGACCAT
BS07076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap4-RA | 1575 | CG32064-PA | 1..1575 | 17..1591 | 7875 | 100 | Plus |
S-Lap7-RB | 1584 | CG13340-PB | 307..1571 | 311..1575 | 1375 | 73.9 | Plus |
S-Lap7-RA | 1584 | CG13340-PA | 307..1571 | 311..1575 | 1375 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap4-RA | 2074 | CG32064-RA | 314..1889 | 17..1592 | 7880 | 100 | Plus |
S-Lap7-RB | 2030 | CG13340-RB | 610..1874 | 311..1575 | 1375 | 73.9 | Plus |
S-Lap7-RA | 2122 | CG13340-RA | 610..1874 | 311..1575 | 1375 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10491174..10492749 | 17..1592 | 7880 | 100 | Plus |
2R | 25286936 | 2R | 13778372..13779636 | 1575..311 | 1375 | 73.9 | Minus |
3L | 28110227 | 3L | 10466702..10467804 | 174..1276 | 640 | 71 | Plus |
2R | 25286936 | 2R | 13597189..13597760 | 306..877 | 340 | 70.6 | Plus |
2R | 25286936 | 2R | 16491863..16492298 | 442..877 | 215 | 70 | Plus |
2R | 25286936 | 2R | 13597896..13598075 | 1013..1192 | 195 | 73.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:33:55 has no hits.
BS07076.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:09 Download gff for
BS07076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32064-RA | 1..1575 | 17..1591 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:43 Download gff for
BS07076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32064-RA | 309..1891 | 12..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:46 Download gff for
BS07076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap4-RA | 314..1887 | 17..1590 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:10 Download gff for
BS07076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32064-RA | 309..1891 | 12..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:43 Download gff for
BS07076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap4-RA | 314..1887 | 17..1590 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:43 Download gff for
BS07076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10491174..10492747 | 17..1590 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:46 Download gff for
BS07076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10484274..10485847 | 17..1590 | 100 | | Plus |
BS07076.pep Sequence
Translation from 16 to 1590
> BS07076.pep
MNKLRNVLKSVVQRRLPVSHLIQIRTACGGESKSSKGLVVGVYQKENDND
PKLTPAGEKVNDRLHGKLQEMICQSKITGHLGRGKIFNNIDPEFRSMAVV
GVGLEGIGFNELEMLDEGMENVRVAAGIGARSLQEIGVSEVFVDGMDYAE
QAAEGAVLAVWRYCDMNSKRKPPHIPKLELYESPDYEGWTRGVFKAEAQN
LARRMCDTPACCMTPTLFAQATVDALCPCGITVEIRTMEWIEQQRLHSFL
MIAKGSCEPPVLMEITYCGTNPEDKPILFLGKGITFNSGAMNLRKCRGME
EYRACMSGAASCVAMMRCVAALALPINVCCIIPLCENMPSGMACKPGDVV
TLMNHKSMAVRNLDKAGVVVMADPLLYGQSTYKPRLVVDVATLGSGVKKA
FGGGATGIFSNSHYIWKQFQSAGALTGDRVWRLPLWNYYRKQITDEMGYD
LSNDGRGLANSCLAAAVLHELVPCVDWAHLDTRGTGLLTKYGLVPYLTAK
YMTGRPTRTLAQFLYQMACPANQK*
BS07076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap4-PA | 524 | CG32064-PA | 1..524 | 1..524 | 2783 | 100 | Plus |
S-Lap7-PB | 527 | CG13340-PB | 1..524 | 1..520 | 2118 | 74.5 | Plus |
S-Lap7-PA | 527 | CG13340-PA | 1..524 | 1..520 | 2118 | 74.5 | Plus |
S-Lap3-PD | 535 | CG32063-PD | 38..535 | 27..524 | 1961 | 71.3 | Plus |
S-Lap3-PC | 535 | CG32063-PC | 38..535 | 27..524 | 1961 | 71.3 | Plus |