Clone Sequence Records
BS07080.3prime Sequence
921 bp (773 high quality bases) assembled on 2006-01-06
> BS07080.3prime
ATGGTCTAGAAAGCTTTTACAGAGTGATGGTTTCCATATATCGCTCAAAG
GATCTGGTGATTACTGTGTGATCGGGAGCCAGGTGGGTATCCGCCATCAC
AGCCAGTCTGTATTTGTCCCCAAAGCGATGAAGATTTAAGGAAAGGCAGG
TCTTCGATTGTGGTGGCCGGAAAAGTAGAACATCCTGGACATTCTGACCC
CAGGCCGCTTGAAACTCAGCAGTCGCTCCGTAGATTTCAGTGATTGTGAT
TGGAAAGTTGTATGAGAAAAAGTTGATGAATATTTTGGTAATTACGTGAG
GCAAAAGGGATGTGAGAAGGCTGTACTTGGTCTGTCCAATAGACGCTAAG
TAAATAATGATCTGTTGCTTTCTGATTCGTTCAACAATCTGATGGAGTTC
TTTGGTGTGATTTGCGTCTGGTTGCCTTAGAGGCAATTGCAGAAAGACAA
CACCCCCGATATTTTCAGATTTATCCCCACTGCGATCTGTGAAATACCCT
TTATCTATGGTCCTACAAGTGGTGTTCAAGTAATTGGGGACTTTCAAGTC
ACCTGAGAACGTATTAAAGTAATCGTGAACAGCCCCTGCCAAGCAAGTTA
AACTAAAGTCGGATTCTCGGAGATCACTATTGAATTTACCCTGATTACGG
GTCCTGAGTTGGGCGCCATTTATTGATCGGCTAAATGAGACTATTTTCCT
GCCCGCATAGGATTTTTTATGCAAAATGTTTAACTCCTTTGTGGGCTGTT
CGAAAAGCACTTCGTAAATGTTTCGTGGGGCCTGAAAAAGTTCCCATATA
ATTTTGAAAAACTCCAATTGGGCGTAAAGTAGAAGGGGTACGTACAAGTG
CAGCCTGGCGCAATAGGTGGAAGTATGGGAAGTTTTACCTTTGATCAGAA
CATCAGCGAAAGCCAAAAACT
BS07080.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33120-PA | 2070 | CG33120-RA | 1166..2070 | 921..17 | 4500 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33120-RA | 2301 | CG33120-RA | 1319..2223 | 921..17 | 4510 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18841478..18842382 | 17..921 | 4510 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:25:12 has no hits.
BS07080.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:28 Download gff for
BS07080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-PA | 1166..2070 | 17..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:32 Download gff for
BS07080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-PA | 1166..2070 | 17..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:23:42 Download gff for
BS07080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 1319..2229 | 8..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:42:10 Download gff for
BS07080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 1319..2229 | 8..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:42:10 Download gff for
BS07080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18841472..18842382 | 8..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:23:42 Download gff for
BS07080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18841472..18842382 | 8..921 | 99 | | Plus |
BS07080.5prime Sequence
899 bp (841 high quality bases) assembled on 2006-01-06
> BS07080.5prime
GAAGTTATCAGTCGACATGGAAAGTTTCTGGCAGGAAGTGAAGTCTCTGC
TGAAGACCGTCTTCTGCTTTGTGGTGGCTATGATGCTAGTGCCTTTGCTG
ATGTTATCATTCCTGTGTGCTCACTTTGGCAACGAACTATCCAACTATGT
GCTGAGCATCAAGTACCCGAACCTGACCATCTCAAAGTCGAAGAAGATCC
GCACCTTAATCGACACGCCGAAGAATGCGGGCGTATTTCACTTCCTGCTG
CAAGTGGAGGGCGACTGTGACTTCGAGCGGATACGGATGGCCTATGCCCA
GCATCTGACTGACCTGAGGGACAAGACCGGGATGCTCAGGTTCCCCAAGC
TGCGTCAAAAACTTGTCACCTGTTGGGGGCATTATGCGTGGGTGAATGAC
AGCAGCGGCTTCAACATCAACAACCACGTCTTACTCAGCACCCACAAGTA
TCGAGGTCGTCCGGTTAGCGAATCAAATATTCAGGAGTATGTCAGCGAGC
TGGCCACGAAGTACATCCCATCCGATCTCCCCCAGTGGCAGGTGATCGTG
ATCCCCAACTCGGATAGCACACAGCCCTACTACATACTCATTAAGCTGCA
CCACCTGATAATTGCCGAGGAGGAGGATCTGCATGTGAGTGAGATGCTCC
TGCTTCAGGATCCCCATAAGAAAACCACAATGACCCTAAGCGATGGATTG
GATTGGGACAGTTCGAGTCCAAAACTTTCCCGCTTTGTGCGAAAGCCGGA
ACACATAAGCAGACTCATCAATCATATAATCCATCTTATCATTTGCCGTT
GGCAAAAGTTCATCTACGAATTTGAATCTCTTGAAACCCCCGATGGTTCA
ACGTCCAGTGATCAGGTTGGAAACCTAAGCCAGTTGATGTCGTTGGTCG
BS07080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33120-PA | 2070 | CG33120-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33120-RA | 2301 | CG33120-RA | 154..1036 | 17..899 | 4415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18842665..18843162 | 899..402 | 2490 | 100 | Minus |
| 2L | 23513712 | 2L | 18843219..18843507 | 405..117 | 1445 | 100 | Minus |
| 2L | 23513712 | 2L | 18844256..18844351 | 118..23 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:35:00 has no hits.
BS07080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:29 Download gff for
BS07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:33 Download gff for
BS07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:26:12 Download gff for
BS07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 154..1036 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:19 Download gff for
BS07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 154..1036 | 17..899 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:19 Download gff for
BS07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18844258..18844351 | 23..116 | 100 | | Minus |
| 2L | 18842665..18843158 | 406..899 | 100 | <- | Minus |
| 2L | 18843219..18843507 | 117..405 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:26:12 Download gff for
BS07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18842665..18843158 | 406..899 | 100 | <- | Minus |
| arm_2L | 18843219..18843507 | 117..405 | 100 | <- | Minus |
| arm_2L | 18844258..18844351 | 23..116 | 100 | | Minus |
BS07080.complete Sequence
2102 bp assembled on 2008-01-02
GenBank Submission: FJ635720
> BS07080.complete
GAAGTTATCAGTCGACATGGAAAGTTTCTGGCAGGAAGTGAAGTCTCTGC
TGAAGACCGTCTTCTGCTTTGTGGTGGCTATGATGCTAGTGCCTTTGCTG
ATGTTATCATTCCTGTGTGCTCACTTTGGCAACGAACTATCCAACTATGT
GCTGAGCATCAAGTACCCGAACCTGACCATCTCAAAGTCGAAGAAGATCC
GCACCTTAATCGACACGCCGAAGAATGCGGGCGTATTTCACTTCCTGCTG
CAAGTGGAGGGCGACTGTGACTTCGAGCGGATACGGATGGCCTATGCCCA
GCATCTGACTGACCTGAGGGACAAGACCGGGATGCTCAGGTTCCCCAAGC
TGCGTCAAAAACTTGTCACCTGTTGGGGGCATTATGCGTGGGTGAATGAC
AGCAGCGGCTTCAACATCAACAACCACGTCTTACTCAGCACCCACAAGTA
TCGAGGTCGTCCGGTTAGCGAATCAAATATTCAGGAGTATGTCAGCGAGC
TGGCCACGAAGTACATCCCATCCGATCTCCCCCAGTGGCAGGTGATCGTG
ATCCCCAACTCGGATAGCACACAGCCCTACTACATACTCATTAAGCTGCA
CCACCTGATAATTGCCGAGGAGGAGGATCTGCATGTGAGTGAGATGCTCC
TGCTTCAGGATCCCCATAAGAAAACCACAATGACCCTAAGCGATGGATTG
GATTGGGACAGTTCGAGTCCAAAACTTTCCCGCTTTGTGCGAAAGCCGGA
ACACATAAGCAGACTCATCAATCATATAATCCATCTTATCATTTGCCGTT
GGCAAAAGTTCATCTACGAATTTGAATCTCTTGAAACCCCCGATGGTTCA
ACGTCCAGTGATCAGGTTGGAAACCTAAGCCAGTTGATGTCGTTGGTCGT
AATTGTCCTGGTGAATGTAATTTTGGGCTATATAAGGAGTCGAACTATGC
TTAAGAAACTGAAAAGGCGTTCAGTCAGCTACCGCAATGAAGTGGGTCGT
TTTCAAACAATGCGATTGCTGCTGAATAGGGAGTTAGATCAAAGAAATCT
TAATTGGTCGGTTGCCAGAAATGCGATCTATAAGAGCATGCAGCCAACTA
ATTTGGCAAAGGCCTTGACACGTTTCCTTTGGCGTCTAAATCTAAATCAT
GTTTTGCTCTTACCCTATCACATTTACTGTGAGTTTTTGGCTTTCGCTGA
TGTTCTGATCAAAGGTAAAACTTCCCATACTTCCACCTATTGCGCCAGGC
TGCACTTGTACGTACCCCTTCTACTTTACGCCCAATTGGAGTTTTTCAAA
ATTATATGGGAACTTTTCCAGGCCCCACGAAACATTTACGAAGTGCTTTT
CGAACAGCCCACAAAGGAGTTAAACATTTTGCATAAAAAATCCTATGCGG
GCAGGAAAATAGTCTCATTTAGCCGATCAATAAATGGCGCCCAACTCAGG
ACCCGTAATCAGGGTAAATTCAATAGTGATCTCCGAGAATCCGACTTTAG
TTTAACTTGCTTGGCAGGGGCTGTTCACGATTACTTTAATACGTTCTCAG
GTGACTTGAAAGTCCCCAATTACTTGAACACCACTTGTAGGACCATAGAT
AAAGGGTATTTCACAGATCGCAGTGGGGATAAATCTGAAAATATCGGGGG
TGTTGTCTTTCTGCAATTGCCTCTAAGGCAACCAGACGCAAATCACACCA
AAGAACTCCATCAGATTGTTGAACGAATCAGAAAGCAACAGATCATTATT
TACTTAGCGTCTATTGGACAGACCAAGTACAGCCTTCTCACATCCCTTTT
GCCTCACGTAATTACCAAAATATTCATCAACTTTTTCTCATACAACTTTC
CAATCACAATCACTGAAATCTACGGAGCGACTGCTGAGTTTCAAGCGGCC
TGGGGTCAGAATGTCCAGGATGTTCTACTTTTCCGGCCACCACAATCGAA
GACCTGCCTTTCCTTAAATCTTCATCGCTTTGGGGACAAATACAGACTGG
CTGTGATGGCGGATACCCACCTGGCTCCCGATCACACAGTAATCACCAGA
TCCTTTGAGCGATATATGGAAACCATCACTCTGTAAAAGCTTTCTAGACC
AT
BS07080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33120-RA | 2070 | CG33120-PA | 1..2070 | 17..2086 | 10350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33120-RA | 2301 | CG33120-RA | 154..2223 | 17..2086 | 10350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18841478..18843162 | 2086..402 | 8425 | 100 | Minus |
| 2L | 23513712 | 2L | 18843219..18843507 | 405..117 | 1445 | 100 | Minus |
| 2L | 23513712 | 2L | 18844256..18844351 | 118..23 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:16:17 has no hits.
BS07080.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:47 Download gff for
BS07080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 1..2070 | 17..2086 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:26 Download gff for
BS07080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 132..2199 | 17..2084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:46 Download gff for
BS07080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 154..2221 | 17..2084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:47 Download gff for
BS07080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 132..2207 | 17..2095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:14 Download gff for
BS07080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 154..2221 | 17..2084 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:14 Download gff for
BS07080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18841480..18843158 | 406..2084 | 100 | <- | Minus |
| 2L | 18843219..18843507 | 117..405 | 100 | <- | Minus |
| 2L | 18844258..18844351 | 23..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:46 Download gff for
BS07080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18841480..18843158 | 406..2084 | 100 | <- | Minus |
| arm_2L | 18843219..18843507 | 117..405 | 100 | <- | Minus |
| arm_2L | 18844258..18844351 | 23..116 | 100 | | Minus |
BS07080.pep Sequence
Translation from 16 to 2085
> BS07080.pep
MESFWQEVKSLLKTVFCFVVAMMLVPLLMLSFLCAHFGNELSNYVLSIKY
PNLTISKSKKIRTLIDTPKNAGVFHFLLQVEGDCDFERIRMAYAQHLTDL
RDKTGMLRFPKLRQKLVTCWGHYAWVNDSSGFNINNHVLLSTHKYRGRPV
SESNIQEYVSELATKYIPSDLPQWQVIVIPNSDSTQPYYILIKLHHLIIA
EEEDLHVSEMLLLQDPHKKTTMTLSDGLDWDSSSPKLSRFVRKPEHISRL
INHIIHLIICRWQKFIYEFESLETPDGSTSSDQVGNLSQLMSLVVIVLVN
VILGYIRSRTMLKKLKRRSVSYRNEVGRFQTMRLLLNRELDQRNLNWSVA
RNAIYKSMQPTNLAKALTRFLWRLNLNHVLLLPYHIYCEFLAFADVLIKG
KTSHTSTYCARLHLYVPLLLYAQLEFFKIIWELFQAPRNIYEVLFEQPTK
ELNILHKKSYAGRKIVSFSRSINGAQLRTRNQGKFNSDLRESDFSLTCLA
GAVHDYFNTFSGDLKVPNYLNTTCRTIDKGYFTDRSGDKSENIGGVVFLQ
LPLRQPDANHTKELHQIVERIRKQQIIIYLASIGQTKYSLLTSLLPHVIT
KIFINFFSYNFPITITEIYGATAEFQAAWGQNVQDVLLFRPPQSKTCLSL
NLHRFGDKYRLAVMADTHLAPDHTVITRSFERYMETITL*
BS07080.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33120-PA | 689 | CG33120-PA | 1..689 | 1..689 | 3593 | 100 | Plus |
