Clone Sequence Records
BS07081.3prime Sequence
957 bp (794 high quality bases) assembled on 2006-01-06
> BS07081.3prime
ATGGTCTAGAAAGCTTTCAGTGACGTCGACTGCTCTTGATGTCCACTTTA
AATTGTCGCGACCATTCCGCCAGCAAATCGAAATCCCGATCCATGATGTT
GTCACAGAAACTCAAGTCCAGCAACTGCAGCTTGGGACAGTTGACCAGAA
TGTCATAAACACGCTCATGCGTTATGTTCAGAATGCCCATGAGGTCAAGC
TGCTCCAGATTCTTGCCCAGCGCGGCAATATGCATGAGATCGCGTTCGGT
GGTGCCGCGCACCGCCGACAAGAAGAGCTTCTTTAGCTTGGGACAGTTGG
ACAGCAGCTGGAACAGGCCATCTCCGAGCGATGCCTCCCTCATGCACCAG
CCCAGATCCAGTTCCTCCAGCTGATGGAGACGCGCCAGCGATTGCAATCC
TCTGGACGACAGAAAGTGCGCCTTCCACAAATCCAGCGAGATCAGCTGCG
TATTGTACGTGGCCAAATGGGCGGCCACATTGTCCATGTTCACCGAGACA
CCACAAAATGCCAGATTCAGATGCTTTAGCTTGCGATTGCCCTCGAGCAT
GCTGAGCAGCAGTTCCGTTTCGAAGTACGTTTGAAAGAGATCGAGACGCT
CCAGATTCTTGAGATTGGCCAGACAGGAGAAGTTCAACAGCGGCGGTTCA
GTGGCACAGTTGCGCAGGCTCAACTCTATCAGATTATCACAGACAATGCC
CACATTCTCAATGCAGCTGGCATTGAGAAACTTGCAGGAGTTCAGACGCA
GGTGGGTTAGATTATCGCCGCGTTGGGTCAGGAATTTCTTGAACTCGGTG
GGCGAGACATTGCCAAAGCCGCCGCACCAGGACAAATCCAACTTGCGCAA
CATGGTGGCCCGACGCGCCAACGTGCAACACAGCTCCGAGCTGGNCACAT
CCCAGTAGGGCTTCAGGCTGATCTCGGCATAGAGCAGCGGATGCCTGGAG
ATGTCGT
BS07081.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1839-PA | 2010 | CG1839-RA | 1070..2010 | 957..17 | 4636 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbxl4-RA | 2894 | CG1839-RA | 1670..2611 | 957..16 | 4669 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:14:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14234959..14235151 | 153..345 | 965 | 100 | Plus |
| X | 23542271 | X | 14235212..14235378 | 345..511 | 835 | 100 | Plus |
| X | 23542271 | X | 14235444..14235610 | 511..677 | 835 | 100 | Plus |
| X | 23542271 | X | 14235833..14236004 | 786..957 | 819 | 98.3 | Plus |
| X | 23542271 | X | 14235661..14235770 | 676..785 | 550 | 100 | Plus |
| X | 23542271 | X | 14234825..14234894 | 83..152 | 350 | 100 | Plus |
| X | 23542271 | X | 14234696..14234762 | 16..82 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:14:35 has no hits.
BS07081.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:30 Download gff for
BS07081.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1839-PA | 1070..2010 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:35 Download gff for
BS07081.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1839-PA | 1070..2010 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:22:13 Download gff for
BS07081.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbxl4-RA | 1670..2611 | 16..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:50:00 Download gff for
BS07081.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbxl4-RA | 1670..2611 | 16..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:50:00 Download gff for
BS07081.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14235661..14235770 | 676..785 | 100 | <- | Plus |
| X | 14235833..14236004 | 786..957 | 98 | | Plus |
| X | 14234696..14234762 | 16..82 | 100 | <- | Plus |
| X | 14234825..14234894 | 83..152 | 100 | <- | Plus |
| X | 14234959..14235150 | 153..344 | 100 | <- | Plus |
| X | 14235212..14235377 | 345..510 | 100 | <- | Plus |
| X | 14235444..14235608 | 511..675 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:22:13 Download gff for
BS07081.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14129477..14129641 | 511..675 | 100 | <- | Plus |
| arm_X | 14129694..14129803 | 676..785 | 100 | <- | Plus |
| arm_X | 14128729..14128795 | 16..82 | 100 | <- | Plus |
| arm_X | 14128858..14128927 | 83..152 | 100 | <- | Plus |
| arm_X | 14128992..14129183 | 153..344 | 100 | <- | Plus |
| arm_X | 14129245..14129410 | 345..510 | 100 | <- | Plus |
| arm_X | 14129866..14130037 | 786..957 | 98 | | Plus |
BS07081.5prime Sequence
849 bp (738 high quality bases) assembled on 2006-01-06
> BS07081.5prime
GAAGTTATCAGTCGACATGTCCCTGCTGGCCTACGGCGAACCAGCAGAGT
CCAGCGAAACGGACAGCCCGGCGGCGGAGGCGGAGCCGGACGTACTGGTC
GATTTTACGGCCATGCTGCAGCGGCAAAGGCAGAACGGCGATTACGGCGG
TTGGTTCGGTTGCGACAGCAAAATGCAGACGACGCAATCCGATCAGGGCT
ACTATCTCGAGCAATATGTGCTGGGCGTGCTCGATTTCAGTTCACAGTAT
GGCATCGATTACAGCATCTCGTATACGGCGGCCAATGTGATTGGCAGGCC
AACGAAATTTCCCGCCTATGGCGATTATCCGGAGACCTTTCCCATGCGCA
CCTACGGCGACTGGTGGCAACGGGCACCGTCCGCCACGCGTGAGATTCAG
CCCCAGAATCTGCCGAAGTTGGAAACACATGACTATGTTGTTGTTTATTT
CGAGGAGTTTGTAGTGCCCACCGAAGTGGCCATCTTTGAGACCTTCAATC
CGGGCGCCGTTGTACGCATTTGGGCGTACGGCCTGACCAAAAACTGGACC
TGCCTGTGGGAGGCAACGGAAAGCGATCTCTCCCGACCGCCGCCACTGGA
CTCGCGTCGCTTTGCGCCGTCACTGAAGAAGACCACGATGCTAACGAAAA
CGCTGCGCATCGATTTCAATCACAGCCGACTCAATTACTATACGGAAATC
GATGCCATTATGCTGTGCGGTCGAACGGTCACCAAAACGCAAAACCTACT
GGCCAAGCAGCAAATTACGCAGCACAGCCGGACGCTAGTGTCGCCGCCAC
CGGATGCTATTGGCTCAACGTCCGGCGACGGCAGTGGCGGATCAATAGC
BS07081.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1839-PA | 2010 | CG1839-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbxl4-RA | 2894 | CG1839-RA | 600..1430 | 16..846 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14236994..14237324 | 346..16 | 1655 | 100 | Minus |
| X | 23542271 | X | 14236507..14236715 | 648..440 | 1045 | 100 | Minus |
| X | 23542271 | X | 14236244..14236441 | 846..649 | 990 | 100 | Minus |
| X | 23542271 | X | 14236846..14236940 | 440..346 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:34:42 has no hits.
BS07081.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:31 Download gff for
BS07081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1839-PA | 1..834 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:36 Download gff for
BS07081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1839-PA | 1..834 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:26:09 Download gff for
BS07081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbxl4-RA | 600..1434 | 16..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:16 Download gff for
BS07081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbxl4-RA | 600..1434 | 16..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:16 Download gff for
BS07081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14236240..14236441 | 649..849 | 99 | <- | Minus |
| X | 14236507..14236714 | 441..648 | 100 | <- | Minus |
| X | 14236846..14236939 | 347..440 | 100 | <- | Minus |
| X | 14236994..14237324 | 16..346 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:26:09 Download gff for
BS07081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14130273..14130474 | 649..849 | 99 | <- | Minus |
| arm_X | 14130540..14130747 | 441..648 | 100 | <- | Minus |
| arm_X | 14130879..14130972 | 347..440 | 100 | <- | Minus |
| arm_X | 14131027..14131357 | 16..346 | 100 | | Minus |
BS07081.complete Sequence
2042 bp assembled on 2008-01-02
GenBank Submission: FJ635721
> BS07081.complete
GAAGTTATCAGTCGACATGTCCCTGCTGGCCTACGGCGAACCAGCAGAGT
CCAGCGAAACGGACAGCCCGGCGGCGGAGGCGGAGCCGGACGTACTGGTC
GATTTTACGGCCATGCTGCAGCGGCAAAGGCAGAACGGCGATTACGGCGG
TTGGTTCGGTTGCGACAGCAAAATGCAGACGACGCAATCCGATCAGGGCT
ACTATCTCGAGCAATATGTGCTGGGCGTGCTCGATTTCAGTTCACAGTAT
GGCATCGATTACAGCATCTCGTATACGGCGGCCAATGTGATTGGCAGGCC
AACGAAATTTCCCGCCTATGGCGATTATCCGGAGACCTTTCCCATGCGCA
CCTACGGCGACTGGTGGCAACGGGCACCGTCCGCCACGCGTGAGATTCAG
CCCCAGAATCTGCCGAAGTTGGAAACACATGACTATGTTGTTGTTTATTT
CGAGGAGTTTGTAGTGCCCACCGAAGTGGCCATCTTTGAGACCTTCAATC
CGGGCGCCGTTGTACGCATTTGGGCGTACGGCCTGACCAAAAACTGGACC
TGCCTGTGGGAGGCAACGGAAAGCGATCTCTCCCGACCGCCGCCACTGGA
CTCGCGTCGCTTTGCGCCGTCACTGAAGAAGACCACGATGCTAACGAAAA
CGCTGCGCATCGATTTCAATCACAGCCGACTCAATTACTATACGGAAATC
GATGCCATTATGCTGTGCGGTCGAACGGTCACCAAAACGCAAAACCTACT
GGCCAAGCAGCAAATTACGCAGCACAGCCGGACGCTAGTGTCGCCGCCAC
CGGATGCTATTGGCTCAACGTCCGGCGACGGCAGTGGCGGATCAATTAGC
CACAAGCTGCGCACCCTTAAGTTCCAGCCGAATTGCGGCGAAGACGGTGC
CACCAAGCTGCACGAGTTCATCAACAACGATCTTAGTCAGTTTCTGGCGG
ACAATTGTGTGGATGGCGAGGCGGCGGCGCCACAAATCTGTCTAACGGAT
CTGCCATTCGAGATCCTATTGCGCATACTCAGCTACCTGGACCTGAAGTC
GCTGTTCCGCGTGGGTCACGTGTCGCGCACCTTCTACGACATCTCCAGGC
ATCCGCTGCTCTATGCCGAGATCAGCCTGAAGCCCTACTGGGATGTGGCC
AGCTCGGAGCTGTTGTGCACGTTGGCGCGTCGGGCCACCATGTTGCGCAA
GTTGGATTTGTCCTGGTGCGGCGGCTTTGGCAATGTCTCGCCCACCGAGT
TCAAGAAATTCCTGACCCAACGCGGCGATAATCTAACCCACCTGCGTCTG
AACTCCTGCAAGTTTCTCAATGCCAGCTGCATTGAGAATGTGGGCATTGT
CTGTGATAATCTGATAGAGTTGAGCCTGCGCAACTGTGCCACTGAACCGC
CGCTGTTGAACTTCTCCTGTCTGGCCAATCTCAAGAATCTGGAGCGTCTC
GATCTCTTTCAAACGTACTTCGAAACGGAACTGCTGCTCAGCATGCTCGA
GGGCAATCGCAAGCTAAAGCATCTGAATCTGGCATTTTGTGGTGTCTCGG
TGAACATGGACAATGTGGCCGCCCATTTGGCCACGTACAATACGCAGCTG
ATCTCGCTGGATTTGTGGAAGGCGCACTTTCTGTCGTCCAGAGGATTGCA
ATCGCTGGCGCGTCTCCATCAGCTGGAGGAACTGGATCTGGGCTGGTGCA
TGAGGGAGGCATCGCTCGGAGATGGCCTGTTCCAGCTGCTGTCCAACTGT
CCCAAGCTAAAGAAGCTCTTCTTGTCGGCGGTGCGCGGCACCACCGAACG
CGATCTCATGCATATTGCCGCGCTGGGCAAGAATCTGGAGCAGCTTGACC
TCATGGGCATTCTGAACATAACGCATGAGCGTGTTTATGACATTCTGGTC
AACTGTCCCAAGCTGCAGTTGCTGGACTTGAGTTTCTGTGACAACATCAT
GGATCGGGATTTCGATTTGCTGGCGGAATGGTCGCGACAATTTAAAGTGG
ACATCAAGAGCAGTCGACGTCACTGAAAGCTTTCTAGACCAT
BS07081.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbxl4-RA | 2010 | CG1839-PA | 1..2010 | 17..2026 | 10050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbxl4-RA | 2894 | CG1839-RA | 600..2611 | 16..2027 | 10060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14235833..14236441 | 1257..649 | 3045 | 100 | Minus |
| X | 23542271 | X | 14236994..14237324 | 346..16 | 1655 | 100 | Minus |
| X | 23542271 | X | 14236507..14236715 | 648..440 | 1045 | 100 | Minus |
| X | 23542271 | X | 14234959..14235151 | 1890..1698 | 965 | 100 | Minus |
| X | 23542271 | X | 14235212..14235378 | 1698..1532 | 835 | 100 | Minus |
| X | 23542271 | X | 14235444..14235610 | 1532..1366 | 835 | 100 | Minus |
| X | 23542271 | X | 14235661..14235770 | 1367..1258 | 550 | 100 | Minus |
| X | 23542271 | X | 14236846..14236940 | 440..346 | 475 | 100 | Minus |
| X | 23542271 | X | 14234825..14234894 | 1960..1891 | 350 | 100 | Minus |
| X | 23542271 | X | 14234696..14234762 | 2027..1961 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:56:14 has no hits.
BS07081.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:48 Download gff for
BS07081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbxl4-RA | 1..2010 | 17..2026 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:17 Download gff for
BS07081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbxl4-RA | 601..2609 | 17..2025 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:32 Download gff for
BS07081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbxl4-RA | 601..2609 | 17..2025 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:48 Download gff for
BS07081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbxl4-RA | 600..2611 | 16..2027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:32 Download gff for
BS07081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbxl4-RA | 601..2609 | 17..2025 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:32 Download gff for
BS07081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14236994..14237323 | 17..346 | 100 | | Minus |
| X | 14234698..14234762 | 1961..2025 | 100 | <- | Minus |
| X | 14234825..14234894 | 1891..1960 | 100 | <- | Minus |
| X | 14234959..14235150 | 1699..1890 | 100 | <- | Minus |
| X | 14235212..14235377 | 1533..1698 | 100 | <- | Minus |
| X | 14235444..14235608 | 1368..1532 | 100 | <- | Minus |
| X | 14235661..14235770 | 1258..1367 | 100 | <- | Minus |
| X | 14235833..14236441 | 649..1257 | 100 | <- | Minus |
| X | 14236507..14236714 | 441..648 | 100 | <- | Minus |
| X | 14236846..14236939 | 347..440 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:32 Download gff for
BS07081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14129477..14129641 | 1368..1532 | 100 | <- | Minus |
| arm_X | 14129694..14129803 | 1258..1367 | 100 | <- | Minus |
| arm_X | 14128992..14129183 | 1699..1890 | 100 | <- | Minus |
| arm_X | 14128731..14128795 | 1961..2025 | 100 | <- | Minus |
| arm_X | 14128858..14128927 | 1891..1960 | 100 | <- | Minus |
| arm_X | 14129245..14129410 | 1533..1698 | 100 | <- | Minus |
| arm_X | 14129866..14130474 | 649..1257 | 100 | <- | Minus |
| arm_X | 14130540..14130747 | 441..648 | 100 | <- | Minus |
| arm_X | 14130879..14130972 | 347..440 | 100 | <- | Minus |
| arm_X | 14131027..14131356 | 17..346 | 100 | | Minus |
BS07081.pep Sequence
Translation from 16 to 2025
> BS07081.pep
MSLLAYGEPAESSETDSPAAEAEPDVLVDFTAMLQRQRQNGDYGGWFGCD
SKMQTTQSDQGYYLEQYVLGVLDFSSQYGIDYSISYTAANVIGRPTKFPA
YGDYPETFPMRTYGDWWQRAPSATREIQPQNLPKLETHDYVVVYFEEFVV
PTEVAIFETFNPGAVVRIWAYGLTKNWTCLWEATESDLSRPPPLDSRRFA
PSLKKTTMLTKTLRIDFNHSRLNYYTEIDAIMLCGRTVTKTQNLLAKQQI
TQHSRTLVSPPPDAIGSTSGDGSGGSISHKLRTLKFQPNCGEDGATKLHE
FINNDLSQFLADNCVDGEAAAPQICLTDLPFEILLRILSYLDLKSLFRVG
HVSRTFYDISRHPLLYAEISLKPYWDVASSELLCTLARRATMLRKLDLSW
CGGFGNVSPTEFKKFLTQRGDNLTHLRLNSCKFLNASCIENVGIVCDNLI
ELSLRNCATEPPLLNFSCLANLKNLERLDLFQTYFETELLLSMLEGNRKL
KHLNLAFCGVSVNMDNVAAHLATYNTQLISLDLWKAHFLSSRGLQSLARL
HQLEELDLGWCMREASLGDGLFQLLSNCPKLKKLFLSAVRGTTERDLMHI
AALGKNLEQLDLMGILNITHERVYDILVNCPKLQLLDLSFCDNIMDRDFD
LLAEWSRQFKVDIKSSRRH*
BS07081.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbxl4-PA | 669 | CG1839-PA | 1..669 | 1..669 | 3529 | 100 | Plus |
| CG9003-PC | 426 | CG9003-PC | 15..330 | 326..646 | 201 | 26.3 | Plus |
| CG9003-PG | 437 | CG9003-PG | 26..341 | 326..646 | 201 | 26.3 | Plus |
| CG9003-PD | 437 | CG9003-PD | 26..341 | 326..646 | 201 | 26.3 | Plus |
| CG9003-PE | 455 | CG9003-PE | 26..341 | 326..646 | 201 | 26.3 | Plus |
