Clone BS07085 Report

Search the DGRC for BS07085

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptIrc-RA
Protein status:BS07085.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07085.3prime Sequence

895 bp (755 high quality bases) assembled on 2006-01-06

> BS07085.3prime
ATGGTCTAGAAAGCTTCTAGACGTCTTCACAAGAGACCATTTGATTTCTG
GCCGATGGCAACTGGAAGATATTCTGGGGAACAGCTGAAAGGCCGGAATT
CAGGCAAAGGAGTTTGGTTCCATTGAAGTGGCGATATTGCTCCACCAGTT
CAGTGTGTTTTTGGACAGCTTTTTGCTGGTTTTGTTTCAGAACATGTACG
AATTGCTCAGAGATAATGCAACTGAAGGTGGGGCCAATGGATCCATGAAC
AGGATTCTCCGAAATACCACCCACAATGAGGTCCACATCAGCCCAACTGG
CGTATATTGTTTTCAGCTTATCCAAGACATCACTGGGAATGAAATGCTCA
AAATCTTTCCAGCTTTCTACGGGTCTGGACAACACACACGATTCCAAGTA
CCGATAATATGGCAGCAGACCGTGATCTCTCCCCCTTTGGATATCGAAGG
CCAAAATATCGGCATGGGTTGGCTTGGTGTCCTTGTGCCAGACGACACCA
CCGGAGTAGGCAGCGTCCATCTTCATGGTCTCCTGATTGAGCAAACTCTC
AAGGATGTTATTCAACTTTTGGGAAGTGTACTGCAACTTTGGTTTGTAGA
TTTCTTCCTTGAGCTCAAAAAGGTTTTTAGTTGGTAGCTCCTTGCTAATA
AACACATATTGGTTGTTTTTCTCAGTACCGTAGACTACGTTATCCTTGGT
CAGATTTAGGAGCTCATTGGGCAGCATAGAGAAGTAAAATCGAATGGCAG
CCACCGCAAACTCATTGGAGACCTCCAAAGCACGATTAGGCTGTTTTCTC
CTAATCTCACTGGACATCTTCTGGCCGAGCACCTCTGGCAGCCACTCCTC
AATGACCACTCGACGATATATATCCACATTGACTGCCTTGGCAGC

BS07085.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8913-PA 2094 CG8913-RA 1216..2094 895..17 4395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
Irc-RB 2390 CG8913-RB 1417..2296 895..16 4400 100 Minus
Irc-RA 2341 CG8913-RA 1417..2296 895..16 4400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17005763..17005989 895..669 1135 100 Minus
3R 32079331 3R 17006105..17006278 668..495 870 100 Minus
3R 32079331 3R 17006334..17006503 496..327 850 100 Minus
3R 32079331 3R 17006750..17006912 210..48 815 100 Minus
3R 32079331 3R 17006576..17006693 328..211 590 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:30:14 has no hits.

BS07085.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:39 Download gff for BS07085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8913-PA 1216..2094 17..895 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:48 Download gff for BS07085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8913-PA 1216..2094 17..895 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:43:08 Download gff for BS07085.3prime
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 1417..2300 11..895 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:44 Download gff for BS07085.3prime
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 1417..2300 11..895 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:44 Download gff for BS07085.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17005763..17005989 669..895 100 -> Minus
3R 17006105..17006276 497..668 100 -> Minus
3R 17006334..17006501 329..496 100 -> Minus
3R 17006576..17006693 211..328 100 -> Minus
3R 17006750..17006912 48..210 100 -> Minus
3R 17007083..17007118 11..47 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:43:08 Download gff for BS07085.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12831485..12831711 669..895 100 -> Minus
arm_3R 12831827..12831998 497..668 100 -> Minus
arm_3R 12832056..12832223 329..496 100 -> Minus
arm_3R 12832298..12832415 211..328 100 -> Minus
arm_3R 12832472..12832634 48..210 100 -> Minus
arm_3R 12832805..12832840 11..47 94   Minus

BS07085.5prime Sequence

868 bp (807 high quality bases) assembled on 2006-01-06

> BS07085.5prime
GAAGTTATCAGTCGACATGGGTGGAATTCAGTACATCTGCCTGCTGGCTT
TCATAATAGGAGCATCATTATTGACAACAATCGATGCTAATTCGAGCCGA
GATGTTAATGCCGAATTAAACAGGATTCCTGCTTCGAAATGGTTGCAATA
TGTAGAAACGGCGTTGGACTCAGTAAATAGGCAAAAGCGACTGGAGGACA
ATCTATTAGGTTCCGATATCACTGTTAAGAACGGCAGCCTTTCACACGCT
CAACTTCTGGATACTTTACCAAGCCTAGCTTCGAAGAAGGACAATAAGCT
CGCCCTGAAGATCCTTAAGTCCAGCTTGCTCGTTTTCAACAGCGAATGCC
TGCCTAATAATATCGATGGAGACAAGTGCCGCAGTTACCTGGAGCAAAAA
CCACTTCCGGAGGGCAGTAGCTTGCGAACTGAGTGTGAGAACTCACTCAA
GGGAAATCGAGAGGGTCACTATGCTTTCAGAAGGCTACTTGGGAGCAGCC
ACTACAGGAACGGTTTCTATCAGATGTTTCCCAATTCCGGAAGACGCGAA
ACAGTGCCGGCTGCGTGGTCCATTAGTAAGGAGCTGTATGAGCCCGATCA
CATTCAGATCTCCAAACAACAAACCTTCGAAAGCAATTCCAATTTGGCCC
TCCCTCAGTGGGCTCAATTTGTGGAGCATGATCTTAGCAAGCCGGTGTCG
CAATCAATGAGCAATGGAGCCCCAATAGAGTGCTGCAGCCGTGACCAGAT
CAACCTTCAGCCGCGTCACCACCACCCGGCATGTGCTCCGATTCTGTACC
AGCCCGGTGGGAAATACGACGTGCCCAGCTGCCTTAACTATGTGCGAAGT
GCTCTGGCCGTGGCTGAT

BS07085.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8913-PA 2094 CG8913-RA 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
Irc-RB 2390 CG8913-RB 202..1053 17..868 4260 100 Plus
Irc-RA 2341 CG8913-RA 202..1053 17..868 4260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17004467..17004801 189..523 1675 100 Plus
3R 32079331 3R 17004864..17005053 522..711 950 100 Plus
3R 32079331 3R 17005170..17005327 711..868 790 100 Plus
3R 32079331 3R 17004204..17004300 93..189 485 100 Plus
3R 32079331 3R 17003076..17003151 17..92 380 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:25:41 has no hits.

BS07085.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:41 Download gff for BS07085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8913-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:50 Download gff for BS07085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8913-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:28:08 Download gff for BS07085.5prime
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 202..1053 17..868 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:55:10 Download gff for BS07085.5prime
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 202..1053 17..868 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:55:10 Download gff for BS07085.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17003076..17003151 17..92 100 -> Plus
3R 17004204..17004300 93..189 100 -> Plus
3R 17004468..17004801 190..523 100 -> Plus
3R 17004866..17005052 524..710 100 -> Plus
3R 17005170..17005327 711..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:28:08 Download gff for BS07085.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12828798..12828873 17..92 100 -> Plus
arm_3R 12829926..12830022 93..189 100 -> Plus
arm_3R 12830190..12830523 190..523 100 -> Plus
arm_3R 12830588..12830774 524..710 100 -> Plus
arm_3R 12830892..12831049 711..868 100   Plus

BS07085.complete Sequence

2126 bp assembled on 2008-01-02

GenBank Submission: FJ635723

> BS07085.complete
GAAGTTATCAGTCGACATGGGTGGAATTCAGTACATCTGCCTGCTGGCTT
TCATAATAGGAGCATCATTATTGACAACAATCGATGCTAATTCGAGCCGA
GATGTTAATGCCGAATTAAACAGGATTCCTGCTTCGAAATGGTTGCAATA
TGTAGAAACGGCGTTGGACTCAGTAAATAGGCAAAAGCGACTGGAGGACA
ATCTATTAGGTTCCGATATCACTGTTAAGAACGGCAGCCTTTCACACGCT
CAACTTCTGGATACTTTACCAAGCCTAGCTTCGAAGAAGGACAATAAGCT
CGCCCTGAAGATCCTTAAGTCCAGCTTGCTCGTTTTCAACAGCGAATGCC
TGCCTAATAATATCGATGGAGACAAGTGCCGCAGTTACCTGGAGCAAAAA
CCACTTCCGGAGGGCAGTAGCTTGCGAACTGAGTGTGAGAACTCACTCAA
GGGAAATCGAGAGGGTCACTATGCTTTCAGAAGGCTACTTGGGAGCAGCC
ACTACAGGAACGGTTTCTATCAGATGTTTCCCAATTCCGGAAGACGCGAA
ACAGTGCCGGCTGCGTGGTCCATTAGTAAGGAGCTGTATGAGCCCGATCA
CATTCAGATCTCCAAACAACAAACCTTCGAAAGCAATTCCAATTTGGCCC
TCCCTCAGTGGGCTCAATTTGTGGAGCATGATCTTAGCAAGCCGGTGTCG
CAATCAATGAGCAATGGAGCCCCAATAGAGTGCTGCAGCCGTGACCAGAT
CAACCTTCAGCCGCGTCACCACCACCCGGCATGTGCTCCGATTCTGTACC
AGCCCGGTGGGAAATACGACGTGCCCAGCTGCCTTAACTATGTGCGAAGT
GCTCTGGCCGTGGCTGATTGCAATTTCGGTGGCGCCGAACAACTCAACCA
GGCCACGGGGTCCTTGGATCTATCGCAACTCTATGGTTTCACCGCAGCGG
CGGAGAGAAAGTTGCGTGTTCTCGAGGGCGGTTTGTTAAGGTCAACTCCT
CGTGGAGAATTCGACAACGCCCTCCTGCCCATCGCCACCGATACGGAAGG
ACCATCGTTCTGCGCCAGGGCAACAATTGGTGATGGCACCTGCTTTGCTG
CCGGAGATTCGCGGGTGAATAGCAGTCCGTTCTCCATACTGATCTACACG
ATCTTCATGCGCAATCACAACAAAGTGGCTGCCGAGCTGAAGCAAAGGAA
TCCCCGGTGGAGCGATGAAAAGCTCTTCCAAGCTGCCAAGGCAGTCAATG
TGGATATATATCGTCGAGTGGTCATTGAGGAGTGGCTGCCAGAGGTGCTC
GGCCAGAAGATGTCCAGTGAGATTAGGAGAAAACAGCCTAATCGTGCTTT
GGAGGTCTCCAATGAGTTTGCGGTGGCTGCCATTCGATTTTACTTCTCTA
TGCTGCCCAATGAGCTCCTAAATCTGACCAAGGATAACGTAGTCTACGGT
ACTGAGAAAAACAACCAATATGTGTTTATTAGCAAGGAGCTACCAACTAA
AAACCTTTTTGAGCTCAAGGAAGAAATCTACAAACCAAAGTTGCAGTACA
CTTCCCAAAAGTTGAATAACATCCTTGAGAGTTTGCTCAATCAGGAGACC
ATGAAGATGGACGCTGCCTACTCCGGTGGTGTCGTCTGGCACAAGGACAC
CAAGCCAACCCATGCCGATATTTTGGCCTTCGATATCCAAAGGGGGAGAG
ATCACGGTCTGCTGCCATATTATCGGTACTTGGAATCGTGTGTGTTGTCC
AGACCCGTAGAAAGCTGGAAAGATTTTGAGCATTTCATTCCCAGTGATGT
CTTGGATAAGCTGAAAACAATATACGCCAGTTGGGCTGATGTGGACCTCA
TTGTGGGTGGTATTTCGGAGAATCCTGTTCATGGATCCATTGGCCCCACC
TTCAGTTGCATTATCTCTGAGCAATTCGTACATGTTCTGAAACAAAACCA
GCAAAAAGCTGTCCAAAAACACACTGAACTGGTGGAGCAATATCGCCACT
TCAATGGAACCAAACTCCTTTGCCTGAATTCCGGCCTTTCAGCTGTTCCC
CAGAATATCTTCCAGTTGCCATCGGCCAGAAATCAAATGGTCTCTTGTGA
AGACGTCTAGAAGCTTTCTAGACCAT

BS07085.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Irc-RB 2094 CG8913-PB 1..2094 17..2110 10470 100 Plus
Irc-RA 2094 CG8913-PA 1..2094 17..2110 10470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
Irc-RB 2390 CG8913-RB 202..2296 17..2111 10475 100 Plus
Irc-RA 2341 CG8913-RA 202..2296 17..2111 10475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17005424..17005989 893..1458 2830 100 Plus
3R 32079331 3R 17004467..17004801 189..523 1675 100 Plus
3R 32079331 3R 17004864..17005053 522..711 950 100 Plus
3R 32079331 3R 17005170..17005351 711..892 910 100 Plus
3R 32079331 3R 17006105..17006278 1459..1632 870 100 Plus
3R 32079331 3R 17006334..17006503 1631..1800 850 100 Plus
3R 32079331 3R 17006750..17006912 1917..2079 815 100 Plus
3R 32079331 3R 17006576..17006693 1799..1916 590 100 Plus
3R 32079331 3R 17004204..17004300 93..189 485 100 Plus
3R 32079331 3R 17003076..17003151 17..92 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:41:50 has no hits.

BS07085.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:50 Download gff for BS07085.complete
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 1..2094 17..2110 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:54 Download gff for BS07085.complete
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 200..2293 17..2110 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:42 Download gff for BS07085.complete
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 202..2295 17..2110 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:50 Download gff for BS07085.complete
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 200..2298 17..2116 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:23 Download gff for BS07085.complete
Subject Subject Range Query Range Percent Splice Strand
Irc-RA 202..2295 17..2110 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:23 Download gff for BS07085.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17006750..17006912 1917..2079 100 -> Plus
3R 17007083..17007113 2080..2110 100   Plus
3R 17003076..17003151 17..92 100 -> Plus
3R 17004204..17004300 93..189 100 -> Plus
3R 17004468..17004801 190..523 100 -> Plus
3R 17004866..17005052 524..710 100 -> Plus
3R 17005170..17005351 711..892 100 -> Plus
3R 17005424..17005989 893..1458 100 -> Plus
3R 17006105..17006276 1459..1630 100 -> Plus
3R 17006334..17006501 1631..1798 100 -> Plus
3R 17006576..17006693 1799..1916 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:42 Download gff for BS07085.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12828798..12828873 17..92 100 -> Plus
arm_3R 12829926..12830022 93..189 100 -> Plus
arm_3R 12830190..12830523 190..523 100 -> Plus
arm_3R 12830588..12830774 524..710 100 -> Plus
arm_3R 12830892..12831073 711..892 100 -> Plus
arm_3R 12831146..12831711 893..1458 100 -> Plus
arm_3R 12831827..12831998 1459..1630 100 -> Plus
arm_3R 12832056..12832223 1631..1798 100 -> Plus
arm_3R 12832298..12832415 1799..1916 100 -> Plus
arm_3R 12832472..12832634 1917..2079 100 -> Plus
arm_3R 12832805..12832835 2080..2110 100   Plus

BS07085.pep Sequence

Translation from 16 to 2109

> BS07085.pep
MGGIQYICLLAFIIGASLLTTIDANSSRDVNAELNRIPASKWLQYVETAL
DSVNRQKRLEDNLLGSDITVKNGSLSHAQLLDTLPSLASKKDNKLALKIL
KSSLLVFNSECLPNNIDGDKCRSYLEQKPLPEGSSLRTECENSLKGNREG
HYAFRRLLGSSHYRNGFYQMFPNSGRRETVPAAWSISKELYEPDHIQISK
QQTFESNSNLALPQWAQFVEHDLSKPVSQSMSNGAPIECCSRDQINLQPR
HHHPACAPILYQPGGKYDVPSCLNYVRSALAVADCNFGGAEQLNQATGSL
DLSQLYGFTAAAERKLRVLEGGLLRSTPRGEFDNALLPIATDTEGPSFCA
RATIGDGTCFAAGDSRVNSSPFSILIYTIFMRNHNKVAAELKQRNPRWSD
EKLFQAAKAVNVDIYRRVVIEEWLPEVLGQKMSSEIRRKQPNRALEVSNE
FAVAAIRFYFSMLPNELLNLTKDNVVYGTEKNNQYVFISKELPTKNLFEL
KEEIYKPKLQYTSQKLNNILESLLNQETMKMDAAYSGGVVWHKDTKPTHA
DILAFDIQRGRDHGLLPYYRYLESCVLSRPVESWKDFEHFIPSDVLDKLK
TIYASWADVDLIVGGISENPVHGSIGPTFSCIISEQFVHVLKQNQQKAVQ
KHTELVEQYRHFNGTKLLCLNSGLSAVPQNIFQLPSARNQMVSCEDV*

BS07085.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
Irc-PB 697 CG8913-PB 1..697 1..697 3637 100 Plus
Irc-PA 697 CG8913-PA 1..697 1..697 3637 100 Plus
cd-PA 830 CG6969-PA 96..778 31..697 511 26.7 Plus
CG4009-PC 649 CG4009-PC 26..629 85..694 485 28.2 Plus
CG4009-PB 649 CG4009-PB 26..629 85..694 485 28.2 Plus