Clone BS07087 Report

Search the DGRC for BS07087

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptGadd34-RA
Protein status:BS07087.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07087.3prime Sequence

906 bp (842 high quality bases) assembled on 2006-01-06

> BS07087.3prime
ATGGTCTAGAAAGCTTCTAGTCCTCGTGCAAGAATCGAGCTTGGTAGACA
CGATCTCGGTGAACTGGAGTCAGGACGGCATTGAGAATGGGTGAAATCCG
CCGAATCCGCTGCTGAAAGCGATCCCGATCTCGCGCCATTACCTGCCATT
CGCTCTTTCTGGCAGCCCGATAAGCGTAGTCCCAGGCGAGCATTACGTGA
ACTTCGGGTTTCATGTTGAAACGAACCTTCTTGACAGGAGTCGAGCTGTC
GTCGCTGCACTGGCAGGCCTTTAGCTCCTCGGTATTTTCATCCTCACCGC
ATGCTGTAAACTGCACGCTGCTGTCGTCGTCATCATCATCCTCGTCTTCC
TCGACATCCTCATCCGCCTGCTCTGCGTCGTCCTCAAAGCAAATGAAGCT
GTCCTCACTGCACTCGGAAATACTACGCTGCCGCTGCCAGGAGCTCTTGG
CAGCCGATCCTTGCGAACAGCCAGCGTTGTTATTCCGGTCACTGGAGGCT
TGACTAGTAGGGCAATCCTCCGCGGTATCCTTAAAGCCGTGGTGCGGATG
CAGGTCAATAAAGAAGTAGCACGAGGACGGTACGCAACGCCGCAAGGCGT
CCAACTCGATTCCCGCCATCTTGGCGCCCGGCGGACTCTGGGCGTTGACG
CACTTGTGCAGGGCGGTCTGCATTTGAGTTACTACGTCCATAGCCATTAG
CTTGAAAGACATCATGGTGGCCAGCGGATTCAGGGGGTCTGGCTGCAGGG
TTGGGATCCGCAAATCCTCGGGGACTTCGAGCGGTTTGACCTCGGGTGCC
TCCTGATGCACCTTGTTTGGCTTCACAGTGTACGTGATCCAGCGGAGAGG
GGACGTGACGGCCCCGACCGATATTGCTCGTAGATAGGGGAACTCATGTT
TGGCAT

BS07087.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3825-PA 954 CG3825-RA 147..954 824..17 4040 100 Minus
CG3825-PA 954 CG3825-RA 68..146 902..824 345 97.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Gadd34-RA 1597 CG3825-RA 432..1318 902..17 4380 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23976146..23976824 225..902 3315 99.6 Plus
2R 25286936 2R 23975878..23976089 17..228 1060 100 Plus
Blast to na_te.dros performed 2015-02-10 21:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 563..604 356..316 108 76.2 Minus

BS07087.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:44 Download gff for BS07087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3825-PA 64..954 17..906 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:54 Download gff for BS07087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3825-PA 64..954 17..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:39:18 Download gff for BS07087.3prime
Subject Subject Range Query Range Percent Splice Strand
Gadd34-RA 428..1318 17..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:38 Download gff for BS07087.3prime
Subject Subject Range Query Range Percent Splice Strand
Gadd34-RA 428..1318 17..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:38 Download gff for BS07087.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23975878..23976087 17..226 100 <- Plus
2R 23976148..23976826 227..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:39:18 Download gff for BS07087.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19863401..19863610 17..226 100 <- Plus
arm_2R 19863671..19864349 227..906 99   Plus

BS07087.5prime Sequence

919 bp (825 high quality bases) assembled on 2006-01-06

> BS07087.5prime
GAAGTTATCAGTCGACATGTCGAAATTTCACACCCTTATGGGCGCACTGT
TTGACCCCTTCCTCTTTGTTCTCCGCCTGATTGCAAACATGAGTTCCCCT
ATCTACGAGCAATATCGGTTCGGGCCGTCACGTCCCCTCTCCGCTGGATC
ACGTACACTGTGGAAGCCAAACAAGGTGCATCAGGAGGCACCCGAGGTCA
AACCGCTCGAAGTCCCCGAGGATTTGCGGATCCCAACCCTGCAGCCAGAC
CCCCTGAATCCGCTGGCCACCATGATGTCTTTCAAGCTAATGGCTATGGA
CGTAGTAACTCAAATGCAGACCGCCCTGCACAAGTGCGTCAACGCCCAGA
GTCCGCCGGGCGCCAAGATGGCGGGAATCGAGTTGGACGCCTTGCGGCGT
TGCGTACCGTCCTCGTGCTACTTCTTTATTGACCTGCATCCGCACCACGG
CTTTAAGGATACCGCGGAGGATTGCCCTACTAGTCAAGCCTCCAGTGACC
GGAATAACAACGCTGGCTGTTCGCAAGGATCGGCTGCCAAGAGCTCCTGG
CAGCGGCAGCGTAGTATTTCCGAGTGCAGTGAGGACAGCTTCATTTGCTT
TGAGGACGACGCAGAGCAGGCGGATGAGGATGTCGAGGAAGACGAGGATG
ATGATGACGACGACAGCAGCGTGCAGTTTACAGCATGCGGTGAGGATGAA
AATACCGAGGAGCTAAAGGCCTGCCAGTGCAGCGACGACAGCTCGACTCC
TGTCAAGAAGGTTCGTTTCAACATGAAACCCGAAGTTCACGTAATGCTCG
CCTGGGACTACGCTTATCGGGCTGCCAGAAAGAGCGAATGGCAGGTAATG
GCGCGAGATCGGGATCGCTTTCAGCAGCGGATTCGGCGGATTTCCCCATT
CTCAATGCCGTCCTGACTC

BS07087.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3825-PA 954 CG3825-RA 1..878 17..894 4390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Gadd34-RA 1597 CG3825-RA 365..1268 17..919 4495 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23976146..23976891 762..17 3730 100 Minus
2R 25286936 2R 23975928..23976089 919..759 760 99.4 Minus
Blast to na_te.dros performed 2015-02-11 09:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 563..604 631..671 108 76.2 Plus

BS07087.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:45 Download gff for BS07087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3825-PA 1..904 17..919 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:55 Download gff for BS07087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3825-PA 1..904 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:07:35 Download gff for BS07087.5prime
Subject Subject Range Query Range Percent Splice Strand
Gadd34-RA 354..1268 5..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:33:51 Download gff for BS07087.5prime
Subject Subject Range Query Range Percent Splice Strand
Gadd34-RA 354..1268 5..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:33:51 Download gff for BS07087.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23975928..23976087 761..919 99 <- Minus
2R 23976148..23976901 5..760 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:07:35 Download gff for BS07087.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19863451..19863610 761..919 99 <- Minus
arm_2R 19863671..19864424 5..760 99   Minus

BS07087.complete Sequence

986 bp (986 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635724

> BS07087.complete
GAAGTTATCAGTCGACATGTCGAAATTTCACACCCTTATGGGCGCACTGT
TTGACCCCTTCCTCTTTGTTCTCCGCCTGATTGCAAACATGAGTTCCCCT
ATCTACGAGCAATATCGGTTCGGGCCGTCACGTCCCCTCTCCGCTGGATC
ACGTACACTGTGGAAGCCAAACAAGGTGCATCAGGAGGCACCCGAGGTCA
AACCGCTCGAAGTCCCCGAGGATTTGCGGATCCCAACCCTGCAGCCAGAC
CCCCTGAATCCGCTGGCCACCATGATGTCTTTCAAGCTAATGGCTATGGA
CGTAGTAACTCAAATGCAGACCGCCCTGCACAAGTGCGTCAACGCCCAGA
GTCCGCCGGGCGCCAAGATGGCGGGAATCGAGTTGGACGCCTTGCGGCGT
TGCGTACCGTCCTCGTGCTACTTCTTTATTGACCTGCATCCGCACCACGG
CTTTAAGGATACCGCGGAGGATTGCCCTACTAGTCAAGCCTCCAGTGACC
GGAATAACAACGCTGGCTGTTCGCAAGGATCGGCTGCCAAGAGCTCCTGG
CAGCGGCAGCGTAGTATTTCCGAGTGCAGTGAGGACAGCTTCATTTGCTT
TGAGGACGACGCAGAGCAGGCGGATGAGGATGTCGAGGAAGACGAGGATG
ATGATGACGACGACAGCAGCGTGCAGTTTACAGCATGCGGTGAGGATGAA
AATACCGAGGAGCTAAAGGCCTGCCAGTGCAGCGACGACAGCTCGACTCC
TGTCAAGAAGGTTCGTTTCAACATGAAACCCGAAGTTCACGTAATGCTCG
CCTGGGACTACGCTTATCGGGCTGCCAGAAAGAGCGAATGGCAGGTAATG
GCGCGAGATCGGGATCGCTTTCAGCAGCGGATTCGGCGGATTTCACCCAT
TCTCAATGCCGTCCTGACTCCAGTTCACCGAGATCGTGTCTACCAAGCTC
GATTCTTGCACGAGGACTAGAAGCTTTCTAGACCAT

BS07087.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
Gadd34-RA 954 CG3825-PA 1..954 17..970 4770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Gadd34-RA 1597 CG3825-RA 365..1318 17..970 4770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23976146..23976891 762..17 3730 100 Minus
2R 25286936 2R 23975878..23976089 970..759 1060 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:35:06 has no hits.

BS07087.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:59 Download gff for BS07087.complete
Subject Subject Range Query Range Percent Splice Strand
CG3825-RA 1..954 17..970 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:32 Download gff for BS07087.complete
Subject Subject Range Query Range Percent Splice Strand
CG3825-RA 377..1341 5..970 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:03 Download gff for BS07087.complete
Subject Subject Range Query Range Percent Splice Strand
Gadd34-RA 365..1318 17..970 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:59 Download gff for BS07087.complete
Subject Subject Range Query Range Percent Splice Strand
CG3825-RA 377..1341 5..970 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:43 Download gff for BS07087.complete
Subject Subject Range Query Range Percent Splice Strand
Gadd34-RA 365..1318 17..970 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:43 Download gff for BS07087.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23975878..23976087 761..970 100 <- Minus
2R 23976148..23976891 17..760 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:03 Download gff for BS07087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19863401..19863610 761..970 100 <- Minus
arm_2R 19863671..19864414 17..760 100   Minus

BS07087.pep Sequence

Translation from 16 to 969

> BS07087.pep
MSKFHTLMGALFDPFLFVLRLIANMSSPIYEQYRFGPSRPLSAGSRTLWK
PNKVHQEAPEVKPLEVPEDLRIPTLQPDPLNPLATMMSFKLMAMDVVTQM
QTALHKCVNAQSPPGAKMAGIELDALRRCVPSSCYFFIDLHPHHGFKDTA
EDCPTSQASSDRNNNAGCSQGSAAKSSWQRQRSISECSEDSFICFEDDAE
QADEDVEEDEDDDDDDSSVQFTACGEDENTEELKACQCSDDSSTPVKKVR
FNMKPEVHVMLAWDYAYRAARKSEWQVMARDRDRFQQRIRRISPILNAVL
TPVHRDRVYQARFLHED*

BS07087.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Gadd34-PA 317 CG3825-PA 1..317 1..317 1688 100 Plus