Clone Sequence Records
BS07087.3prime Sequence
906 bp (842 high quality bases) assembled on 2006-01-06
> BS07087.3prime
ATGGTCTAGAAAGCTTCTAGTCCTCGTGCAAGAATCGAGCTTGGTAGACA
CGATCTCGGTGAACTGGAGTCAGGACGGCATTGAGAATGGGTGAAATCCG
CCGAATCCGCTGCTGAAAGCGATCCCGATCTCGCGCCATTACCTGCCATT
CGCTCTTTCTGGCAGCCCGATAAGCGTAGTCCCAGGCGAGCATTACGTGA
ACTTCGGGTTTCATGTTGAAACGAACCTTCTTGACAGGAGTCGAGCTGTC
GTCGCTGCACTGGCAGGCCTTTAGCTCCTCGGTATTTTCATCCTCACCGC
ATGCTGTAAACTGCACGCTGCTGTCGTCGTCATCATCATCCTCGTCTTCC
TCGACATCCTCATCCGCCTGCTCTGCGTCGTCCTCAAAGCAAATGAAGCT
GTCCTCACTGCACTCGGAAATACTACGCTGCCGCTGCCAGGAGCTCTTGG
CAGCCGATCCTTGCGAACAGCCAGCGTTGTTATTCCGGTCACTGGAGGCT
TGACTAGTAGGGCAATCCTCCGCGGTATCCTTAAAGCCGTGGTGCGGATG
CAGGTCAATAAAGAAGTAGCACGAGGACGGTACGCAACGCCGCAAGGCGT
CCAACTCGATTCCCGCCATCTTGGCGCCCGGCGGACTCTGGGCGTTGACG
CACTTGTGCAGGGCGGTCTGCATTTGAGTTACTACGTCCATAGCCATTAG
CTTGAAAGACATCATGGTGGCCAGCGGATTCAGGGGGTCTGGCTGCAGGG
TTGGGATCCGCAAATCCTCGGGGACTTCGAGCGGTTTGACCTCGGGTGCC
TCCTGATGCACCTTGTTTGGCTTCACAGTGTACGTGATCCAGCGGAGAGG
GGACGTGACGGCCCCGACCGATATTGCTCGTAGATAGGGGAACTCATGTT
TGGCAT
BS07087.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3825-PA | 954 | CG3825-RA | 147..954 | 824..17 | 4040 | 100 | Minus |
CG3825-PA | 954 | CG3825-RA | 68..146 | 902..824 | 345 | 97.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gadd34-RA | 1597 | CG3825-RA | 432..1318 | 902..17 | 4380 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23976146..23976824 | 225..902 | 3315 | 99.6 | Plus |
2R | 25286936 | 2R | 23975878..23976089 | 17..228 | 1060 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:32:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 563..604 | 356..316 | 108 | 76.2 | Minus |
BS07087.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:44 Download gff for
BS07087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3825-PA | 64..954 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:54 Download gff for
BS07087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3825-PA | 64..954 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:39:18 Download gff for
BS07087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gadd34-RA | 428..1318 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:38 Download gff for
BS07087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gadd34-RA | 428..1318 | 17..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:38 Download gff for
BS07087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23975878..23976087 | 17..226 | 100 | <- | Plus |
2R | 23976148..23976826 | 227..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:39:18 Download gff for
BS07087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19863401..19863610 | 17..226 | 100 | <- | Plus |
arm_2R | 19863671..19864349 | 227..906 | 99 | | Plus |
BS07087.5prime Sequence
919 bp (825 high quality bases) assembled on 2006-01-06
> BS07087.5prime
GAAGTTATCAGTCGACATGTCGAAATTTCACACCCTTATGGGCGCACTGT
TTGACCCCTTCCTCTTTGTTCTCCGCCTGATTGCAAACATGAGTTCCCCT
ATCTACGAGCAATATCGGTTCGGGCCGTCACGTCCCCTCTCCGCTGGATC
ACGTACACTGTGGAAGCCAAACAAGGTGCATCAGGAGGCACCCGAGGTCA
AACCGCTCGAAGTCCCCGAGGATTTGCGGATCCCAACCCTGCAGCCAGAC
CCCCTGAATCCGCTGGCCACCATGATGTCTTTCAAGCTAATGGCTATGGA
CGTAGTAACTCAAATGCAGACCGCCCTGCACAAGTGCGTCAACGCCCAGA
GTCCGCCGGGCGCCAAGATGGCGGGAATCGAGTTGGACGCCTTGCGGCGT
TGCGTACCGTCCTCGTGCTACTTCTTTATTGACCTGCATCCGCACCACGG
CTTTAAGGATACCGCGGAGGATTGCCCTACTAGTCAAGCCTCCAGTGACC
GGAATAACAACGCTGGCTGTTCGCAAGGATCGGCTGCCAAGAGCTCCTGG
CAGCGGCAGCGTAGTATTTCCGAGTGCAGTGAGGACAGCTTCATTTGCTT
TGAGGACGACGCAGAGCAGGCGGATGAGGATGTCGAGGAAGACGAGGATG
ATGATGACGACGACAGCAGCGTGCAGTTTACAGCATGCGGTGAGGATGAA
AATACCGAGGAGCTAAAGGCCTGCCAGTGCAGCGACGACAGCTCGACTCC
TGTCAAGAAGGTTCGTTTCAACATGAAACCCGAAGTTCACGTAATGCTCG
CCTGGGACTACGCTTATCGGGCTGCCAGAAAGAGCGAATGGCAGGTAATG
GCGCGAGATCGGGATCGCTTTCAGCAGCGGATTCGGCGGATTTCCCCATT
CTCAATGCCGTCCTGACTC
BS07087.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3825-PA | 954 | CG3825-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gadd34-RA | 1597 | CG3825-RA | 365..1268 | 17..919 | 4495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23976146..23976891 | 762..17 | 3730 | 100 | Minus |
2R | 25286936 | 2R | 23975928..23976089 | 919..759 | 760 | 99.4 | Minus |
Blast to na_te.dros performed 2015-02-11 09:21:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 563..604 | 631..671 | 108 | 76.2 | Plus |
BS07087.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:45 Download gff for
BS07087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3825-PA | 1..904 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:55 Download gff for
BS07087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3825-PA | 1..904 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:07:35 Download gff for
BS07087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gadd34-RA | 354..1268 | 5..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:33:51 Download gff for
BS07087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gadd34-RA | 354..1268 | 5..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:33:51 Download gff for
BS07087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23975928..23976087 | 761..919 | 99 | <- | Minus |
2R | 23976148..23976901 | 5..760 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:07:35 Download gff for
BS07087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19863451..19863610 | 761..919 | 99 | <- | Minus |
arm_2R | 19863671..19864424 | 5..760 | 99 | | Minus |
BS07087.complete Sequence
986 bp (986 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635724
> BS07087.complete
GAAGTTATCAGTCGACATGTCGAAATTTCACACCCTTATGGGCGCACTGT
TTGACCCCTTCCTCTTTGTTCTCCGCCTGATTGCAAACATGAGTTCCCCT
ATCTACGAGCAATATCGGTTCGGGCCGTCACGTCCCCTCTCCGCTGGATC
ACGTACACTGTGGAAGCCAAACAAGGTGCATCAGGAGGCACCCGAGGTCA
AACCGCTCGAAGTCCCCGAGGATTTGCGGATCCCAACCCTGCAGCCAGAC
CCCCTGAATCCGCTGGCCACCATGATGTCTTTCAAGCTAATGGCTATGGA
CGTAGTAACTCAAATGCAGACCGCCCTGCACAAGTGCGTCAACGCCCAGA
GTCCGCCGGGCGCCAAGATGGCGGGAATCGAGTTGGACGCCTTGCGGCGT
TGCGTACCGTCCTCGTGCTACTTCTTTATTGACCTGCATCCGCACCACGG
CTTTAAGGATACCGCGGAGGATTGCCCTACTAGTCAAGCCTCCAGTGACC
GGAATAACAACGCTGGCTGTTCGCAAGGATCGGCTGCCAAGAGCTCCTGG
CAGCGGCAGCGTAGTATTTCCGAGTGCAGTGAGGACAGCTTCATTTGCTT
TGAGGACGACGCAGAGCAGGCGGATGAGGATGTCGAGGAAGACGAGGATG
ATGATGACGACGACAGCAGCGTGCAGTTTACAGCATGCGGTGAGGATGAA
AATACCGAGGAGCTAAAGGCCTGCCAGTGCAGCGACGACAGCTCGACTCC
TGTCAAGAAGGTTCGTTTCAACATGAAACCCGAAGTTCACGTAATGCTCG
CCTGGGACTACGCTTATCGGGCTGCCAGAAAGAGCGAATGGCAGGTAATG
GCGCGAGATCGGGATCGCTTTCAGCAGCGGATTCGGCGGATTTCACCCAT
TCTCAATGCCGTCCTGACTCCAGTTCACCGAGATCGTGTCTACCAAGCTC
GATTCTTGCACGAGGACTAGAAGCTTTCTAGACCAT
BS07087.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gadd34-RA | 954 | CG3825-PA | 1..954 | 17..970 | 4770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gadd34-RA | 1597 | CG3825-RA | 365..1318 | 17..970 | 4770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23976146..23976891 | 762..17 | 3730 | 100 | Minus |
2R | 25286936 | 2R | 23975878..23976089 | 970..759 | 1060 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:35:06 has no hits.
BS07087.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:59 Download gff for
BS07087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3825-RA | 1..954 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:32 Download gff for
BS07087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3825-RA | 377..1341 | 5..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:03 Download gff for
BS07087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gadd34-RA | 365..1318 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:59 Download gff for
BS07087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3825-RA | 377..1341 | 5..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:43 Download gff for
BS07087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gadd34-RA | 365..1318 | 17..970 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:43 Download gff for
BS07087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23975878..23976087 | 761..970 | 100 | <- | Minus |
2R | 23976148..23976891 | 17..760 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:03 Download gff for
BS07087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19863401..19863610 | 761..970 | 100 | <- | Minus |
arm_2R | 19863671..19864414 | 17..760 | 100 | | Minus |
BS07087.pep Sequence
Translation from 16 to 969
> BS07087.pep
MSKFHTLMGALFDPFLFVLRLIANMSSPIYEQYRFGPSRPLSAGSRTLWK
PNKVHQEAPEVKPLEVPEDLRIPTLQPDPLNPLATMMSFKLMAMDVVTQM
QTALHKCVNAQSPPGAKMAGIELDALRRCVPSSCYFFIDLHPHHGFKDTA
EDCPTSQASSDRNNNAGCSQGSAAKSSWQRQRSISECSEDSFICFEDDAE
QADEDVEEDEDDDDDDSSVQFTACGEDENTEELKACQCSDDSSTPVKKVR
FNMKPEVHVMLAWDYAYRAARKSEWQVMARDRDRFQQRIRRISPILNAVL
TPVHRDRVYQARFLHED*
BS07087.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gadd34-PA | 317 | CG3825-PA | 1..317 | 1..317 | 1688 | 100 | Plus |