Clone BS07088 Report

Search the DGRC for BS07088

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG17027-RA
Protein status:BS07088.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07088.3prime Sequence

897 bp (836 high quality bases) assembled on 2006-01-06

> BS07088.3prime
ATGGTCTAGAAAGCTTTTACTTCTGCACCGGCTTCCCTCCCACGGACTCC
TCCTGGTCTCCCTTACGCAGAAGGTCTTCGATCTCCTTGCGCAACTTCTC
TGTGCCGGCGCAGATTAGATCCGGCTTCATTATGTCGAATGGTCCGCCAA
AGGGATGTGTTACCACGCCTCCCGCCTCCTTAACCAACAGGGAGCCGGCG
GCACAATCCCAGGGATACATGTCCTCAATGTAGAAGGCATCCAGATTGCC
AGCGGCCACCATGCACAGCTCATCCACCACACAGGAGTAGGCAACAAGTC
GTCTAGCATTCAATCCCACATGGTAGATCCTTTTGATATGCTTGTTGGCC
ACCGAATGGACATGCAGCAGGGACACTTCGTAGGCCACATTGGCATCCTT
AACGCTCTCGCAGCTGCTCACGTGGATTGGTTTGCCATTGCAAAAGGCGC
CTTGGCCCAGTTTCGTTGTGAAGAGCTTTTTCTGGACAGGATTGTTGATT
ACTCCCACTACGATTTGTTTGTTGATTGCCAAACCGATTGAAACGCAAAC
GTGTGGAATCTGCTTGATAAAGTTCGAAGTTCCATCGATGGGATCTATGA
TCCAGGTGGGAGCATTCGTCAGCTCTCCGGACACGTTGTTGTTCTTAGCC
GTCTCCTCCTCGCCGATGAACTTGTGATCCGGGTATCTGGCCAATATTTT
CTCCATGAGAAAGTCCTCAATCTTGTTGTCGTAGTCGGTGACCACGTCGT
AGAAATCGCCTTTGATTGAGACGTTTTTACTGGCCATCTCGTAGCCCTCC
ATGAGGATCTCGCCCGCTTTGATGGCCAGGGGATGGATAAAGTTGTACAA
CTCCTCGATATCAGCTTGACTTACTCCTGCCATGTCGACTGATAACT

BS07088.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-PA 867 CG17027-RA 1..867 883..17 4335 100 Minus
CG17026-PA 855 CG17026-RA 258..332 626..552 225 92 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-RB 1558 CG17027-RB 271..1137 883..17 4335 100 Minus
CG17027-RA 1362 CG17027-RA 75..941 883..17 4335 100 Minus
CG17026-RA 1004 CG17026-RA 232..877 742..97 1085 78.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15980370..15980953 883..300 2920 100 Minus
3L 28110227 3L 15981184..15981467 300..17 1420 100 Minus
3L 28110227 3L 15975599..15976039 742..302 735 77.8 Minus
3L 28110227 3L 15976117..15976301 281..97 355 79.5 Minus
Blast to na_te.dros performed on 2015-02-10 18:59:17 has no hits.

BS07088.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:47 Download gff for BS07088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-PA 1..867 17..883 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:56 Download gff for BS07088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-PA 1..867 17..883 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:09:06 Download gff for BS07088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 65..944 10..894 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:02 Download gff for BS07088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 65..944 10..894 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:02 Download gff for BS07088.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15980360..15980953 300..894 99 -> Minus
3L 15981185..15981470 10..299 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:09:06 Download gff for BS07088.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15973460..15974053 300..894 99 -> Minus
arm_3L 15974285..15974570 10..299 98   Minus

BS07088.5prime Sequence

859 bp (765 high quality bases) assembled on 2006-01-06

> BS07088.5prime
GAAGTTATCAGTCGACATGGCAGGAGTAAGTCAAGCTGATATCGAGGAGT
TGTACAACTTTATCCATCCCCTGGCCATCAAAGCGGGCGAGATCCTCATG
GAGGGCTACGAGATGGCCAGTAAAAACGTCTCAATCAAAGGCGATTTCTA
CGACGTGGTCACCGACTACGACAACAAGATTGAGGACTTTCTCATGGAGA
AAATATTGGCCAGATACCCGGATCACAAGTTCATCGGCGAGGAGGAGACG
GCTAAGAACAACAACGTGTCCGGAGAGCTGACGAATGCTCCCACCTGGAT
CATAGATCCCATCGATGGAACTTCGAACTTTATCAAGCAGATTCCACACG
TTTGCGTTTCAATCGGTTTGGCAATCAACAAACAAATCGTAGTGGGAGTA
ATCAACAATCCTGTCCAGAAAAAGCTCTTCACAACGAAACTGGGCCAAGG
CGCCTTTTGCAATGGCAAACCAATCCACGTGAGCAGCTGCGAGAGCGTTA
AGGATGCCAATGTGGCCTACGAAGTGTCCCTGCTGCATGTCCATTCGGTG
GCCAACAAGCATATCAAAAGGATCTACCATGTGGGATTGAATGCTAGACG
ACTTGTTGCCTACTCCTGTGTGGTGGATGAGCTGTGCATGGTGGCCGCTG
GCAATCTGGATGCCTTCTACATTGAGGACATGTATCCCTGGGATTGTGCC
GCCGGCTCCCTGTTGGTTAAGGAGGCGGGAGGCGTGGTAACACATCCCTT
TGGCGGACCATTCGACATAATGAAGCCGGATCTAATCTGCGCCGGCACAG
AGAAGTTGCGCAAGGAGATCGAAGACCTTCTGCGTAAGGGAGACCAGGAG
GAGTCCGTG

BS07088.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-PA 867 CG17027-RA 1..843 17..859 4215 100 Plus
CG17026-PA 855 CG17026-RA 258..332 274..348 225 92 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-RB 1558 CG17027-RB 271..1113 17..859 4215 100 Plus
CG17027-RA 1362 CG17027-RA 75..917 17..859 4215 100 Plus
CG17026-RA 1004 CG17026-RA 232..877 158..803 1085 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15980370..15980953 17..600 2920 100 Plus
3L 28110227 3L 15981184..15981443 600..859 1300 100 Plus
3L 28110227 3L 15975599..15976039 158..598 735 77.8 Plus
3L 28110227 3L 15976117..15976301 619..803 355 79.5 Plus
Blast to na_te.dros performed on 2015-02-13 08:18:02 has no hits.

BS07088.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:48 Download gff for BS07088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:58 Download gff for BS07088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:58:20 Download gff for BS07088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 65..917 6..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:21:23 Download gff for BS07088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 65..917 6..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:21:23 Download gff for BS07088.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15980360..15980953 6..600 99 -> Plus
3L 15981185..15981443 601..859 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:58:20 Download gff for BS07088.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15973460..15974053 6..600 99 -> Plus
arm_3L 15974285..15974543 601..859 100   Plus

BS07088.complete Sequence

899 bp (899 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635725

> BS07088.complete
GAAGTTATCAGTCGACATGGCAGGAGTAAGTCAAGCTGATATCGAGGAGT
TGTACAACTTTATCCATCCCCTGGCCATCAAAGCGGGCGAGATCCTCATG
GAGGGCTACGAGATGGCCAGTAAAAACGTCTCAATCAAAGGCGATTTCTA
CGACGTGGTCACCGACTACGACAACAAGATTGAGGACTTTCTCATGGAGA
AAATATTGGCCAGATACCCGGATCACAAGTTCATCGGCGAGGAGGAGACG
GCTAAGAACAACAACGTGTCCGGAGAGCTGACGAATGCTCCCACCTGGAT
CATAGATCCCATCGATGGAACTTCGAACTTTATCAAGCAGATTCCACACG
TTTGCGTTTCAATCGGTTTGGCAATCAACAAACAAATCGTAGTGGGAGTA
ATCAACAATCCTGTCCAGAAAAAGCTCTTCACAACGAAACTGGGCCAAGG
CGCCTTTTGCAATGGCAAACCAATCCACGTGAGCAGCTGCGAGAGCGTTA
AGGATGCCAATGTGGCCTACGAAGTGTCCCTGCTGCATGTCCATTCGGTG
GCCAACAAGCATATCAAAAGGATCTACCATGTGGGATTGAATGCTAGACG
ACTTGTTGCCTACTCCTGTGTGGTGGATGAGCTGTGCATGGTGGCCGCTG
GCAATCTGGATGCCTTCTACATTGAGGACATGTATCCCTGGGATTGTGCC
GCCGGCTCCCTGTTGGTTAAGGAGGCGGGAGGCGTGGTAACACATCCCTT
TGGCGGACCATTCGACATAATGAAGCCGGATCTAATCTGCGCCGGCACAG
AGAAGTTGCGCAAGGAGATCGAAGACCTTCTGCGTAAGGGAGACCAGGAG
GAGTCCGTGGGAGGGAAGCCGGTGCAGAAGTAAAAGCTTTCTAGACCAT

BS07088.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-RB 867 CG17027-PB 1..867 17..883 4335 100 Plus
CG17027-RA 867 CG17027-PA 1..867 17..883 4335 100 Plus
CG17026-RA 855 CG17026-PA 142..787 158..803 1070 77.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-RB 1558 CG17027-RB 271..1137 17..883 4335 100 Plus
CG17027-RA 1362 CG17027-RA 75..941 17..883 4335 100 Plus
CG17026-RA 1004 CG17026-RA 232..877 158..803 1070 77.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15980370..15980953 17..600 2920 100 Plus
3L 28110227 3L 15981184..15981467 600..883 1420 100 Plus
3L 28110227 3L 15975599..15976039 158..598 735 77.8 Plus
3L 28110227 3L 15976117..15976301 619..803 355 79.5 Plus
Blast to na_te.dros performed on 2014-11-27 16:58:36 has no hits.

BS07088.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:00 Download gff for BS07088.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:33 Download gff for BS07088.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 405..1284 6..890 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:30 Download gff for BS07088.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 75..939 17..881 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:00 Download gff for BS07088.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 405..1284 6..890 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:33 Download gff for BS07088.complete
Subject Subject Range Query Range Percent Splice Strand
CG17027-RA 75..939 17..881 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:33 Download gff for BS07088.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15980370..15980953 17..600 100 -> Plus
3L 15981185..15981465 601..881 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:30 Download gff for BS07088.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15973470..15974053 17..600 100 -> Plus
arm_3L 15974285..15974565 601..881 100   Plus

BS07088.pep Sequence

Translation from 16 to 882

> BS07088.pep
MAGVSQADIEELYNFIHPLAIKAGEILMEGYEMASKNVSIKGDFYDVVTD
YDNKIEDFLMEKILARYPDHKFIGEEETAKNNNVSGELTNAPTWIIDPID
GTSNFIKQIPHVCVSIGLAINKQIVVGVINNPVQKKLFTTKLGQGAFCNG
KPIHVSSCESVKDANVAYEVSLLHVHSVANKHIKRIYHVGLNARRLVAYS
CVVDELCMVAAGNLDAFYIEDMYPWDCAAGSLLVKEAGGVVTHPFGGPFD
IMKPDLICAGTEKLRKEIEDLLRKGDQEESVGGKPVQK*

BS07088.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17027-PB 288 CG17027-PB 1..288 1..288 1510 100 Plus
CG17027-PA 288 CG17027-PA 1..288 1..288 1510 100 Plus
CG17026-PA 284 CG17026-PA 4..284 5..284 1170 77.6 Plus
CG17029-PB 284 CG17029-PB 3..277 2..277 713 46.7 Plus
CG17029-PA 284 CG17029-PA 3..277 2..277 713 46.7 Plus