Clone Sequence Records
BS07088.3prime Sequence
897 bp (836 high quality bases) assembled on 2006-01-06
> BS07088.3prime
ATGGTCTAGAAAGCTTTTACTTCTGCACCGGCTTCCCTCCCACGGACTCC
TCCTGGTCTCCCTTACGCAGAAGGTCTTCGATCTCCTTGCGCAACTTCTC
TGTGCCGGCGCAGATTAGATCCGGCTTCATTATGTCGAATGGTCCGCCAA
AGGGATGTGTTACCACGCCTCCCGCCTCCTTAACCAACAGGGAGCCGGCG
GCACAATCCCAGGGATACATGTCCTCAATGTAGAAGGCATCCAGATTGCC
AGCGGCCACCATGCACAGCTCATCCACCACACAGGAGTAGGCAACAAGTC
GTCTAGCATTCAATCCCACATGGTAGATCCTTTTGATATGCTTGTTGGCC
ACCGAATGGACATGCAGCAGGGACACTTCGTAGGCCACATTGGCATCCTT
AACGCTCTCGCAGCTGCTCACGTGGATTGGTTTGCCATTGCAAAAGGCGC
CTTGGCCCAGTTTCGTTGTGAAGAGCTTTTTCTGGACAGGATTGTTGATT
ACTCCCACTACGATTTGTTTGTTGATTGCCAAACCGATTGAAACGCAAAC
GTGTGGAATCTGCTTGATAAAGTTCGAAGTTCCATCGATGGGATCTATGA
TCCAGGTGGGAGCATTCGTCAGCTCTCCGGACACGTTGTTGTTCTTAGCC
GTCTCCTCCTCGCCGATGAACTTGTGATCCGGGTATCTGGCCAATATTTT
CTCCATGAGAAAGTCCTCAATCTTGTTGTCGTAGTCGGTGACCACGTCGT
AGAAATCGCCTTTGATTGAGACGTTTTTACTGGCCATCTCGTAGCCCTCC
ATGAGGATCTCGCCCGCTTTGATGGCCAGGGGATGGATAAAGTTGTACAA
CTCCTCGATATCAGCTTGACTTACTCCTGCCATGTCGACTGATAACT
BS07088.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17027-PA | 867 | CG17027-RA | 1..867 | 883..17 | 4335 | 100 | Minus |
CG17026-PA | 855 | CG17026-RA | 258..332 | 626..552 | 225 | 92 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17027-RB | 1558 | CG17027-RB | 271..1137 | 883..17 | 4335 | 100 | Minus |
CG17027-RA | 1362 | CG17027-RA | 75..941 | 883..17 | 4335 | 100 | Minus |
CG17026-RA | 1004 | CG17026-RA | 232..877 | 742..97 | 1085 | 78.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15980370..15980953 | 883..300 | 2920 | 100 | Minus |
3L | 28110227 | 3L | 15981184..15981467 | 300..17 | 1420 | 100 | Minus |
3L | 28110227 | 3L | 15975599..15976039 | 742..302 | 735 | 77.8 | Minus |
3L | 28110227 | 3L | 15976117..15976301 | 281..97 | 355 | 79.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:59:17 has no hits.
BS07088.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:47 Download gff for
BS07088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-PA | 1..867 | 17..883 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:56 Download gff for
BS07088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-PA | 1..867 | 17..883 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:09:06 Download gff for
BS07088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 65..944 | 10..894 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:02 Download gff for
BS07088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 65..944 | 10..894 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:02 Download gff for
BS07088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15980360..15980953 | 300..894 | 99 | -> | Minus |
3L | 15981185..15981470 | 10..299 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:09:06 Download gff for
BS07088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15973460..15974053 | 300..894 | 99 | -> | Minus |
arm_3L | 15974285..15974570 | 10..299 | 98 | | Minus |
BS07088.5prime Sequence
859 bp (765 high quality bases) assembled on 2006-01-06
> BS07088.5prime
GAAGTTATCAGTCGACATGGCAGGAGTAAGTCAAGCTGATATCGAGGAGT
TGTACAACTTTATCCATCCCCTGGCCATCAAAGCGGGCGAGATCCTCATG
GAGGGCTACGAGATGGCCAGTAAAAACGTCTCAATCAAAGGCGATTTCTA
CGACGTGGTCACCGACTACGACAACAAGATTGAGGACTTTCTCATGGAGA
AAATATTGGCCAGATACCCGGATCACAAGTTCATCGGCGAGGAGGAGACG
GCTAAGAACAACAACGTGTCCGGAGAGCTGACGAATGCTCCCACCTGGAT
CATAGATCCCATCGATGGAACTTCGAACTTTATCAAGCAGATTCCACACG
TTTGCGTTTCAATCGGTTTGGCAATCAACAAACAAATCGTAGTGGGAGTA
ATCAACAATCCTGTCCAGAAAAAGCTCTTCACAACGAAACTGGGCCAAGG
CGCCTTTTGCAATGGCAAACCAATCCACGTGAGCAGCTGCGAGAGCGTTA
AGGATGCCAATGTGGCCTACGAAGTGTCCCTGCTGCATGTCCATTCGGTG
GCCAACAAGCATATCAAAAGGATCTACCATGTGGGATTGAATGCTAGACG
ACTTGTTGCCTACTCCTGTGTGGTGGATGAGCTGTGCATGGTGGCCGCTG
GCAATCTGGATGCCTTCTACATTGAGGACATGTATCCCTGGGATTGTGCC
GCCGGCTCCCTGTTGGTTAAGGAGGCGGGAGGCGTGGTAACACATCCCTT
TGGCGGACCATTCGACATAATGAAGCCGGATCTAATCTGCGCCGGCACAG
AGAAGTTGCGCAAGGAGATCGAAGACCTTCTGCGTAAGGGAGACCAGGAG
GAGTCCGTG
BS07088.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17027-PA | 867 | CG17027-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
CG17026-PA | 855 | CG17026-RA | 258..332 | 274..348 | 225 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17027-RB | 1558 | CG17027-RB | 271..1113 | 17..859 | 4215 | 100 | Plus |
CG17027-RA | 1362 | CG17027-RA | 75..917 | 17..859 | 4215 | 100 | Plus |
CG17026-RA | 1004 | CG17026-RA | 232..877 | 158..803 | 1085 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:18:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15980370..15980953 | 17..600 | 2920 | 100 | Plus |
3L | 28110227 | 3L | 15981184..15981443 | 600..859 | 1300 | 100 | Plus |
3L | 28110227 | 3L | 15975599..15976039 | 158..598 | 735 | 77.8 | Plus |
3L | 28110227 | 3L | 15976117..15976301 | 619..803 | 355 | 79.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:18:02 has no hits.
BS07088.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:48 Download gff for
BS07088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:47:58 Download gff for
BS07088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:58:20 Download gff for
BS07088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 65..917 | 6..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:21:23 Download gff for
BS07088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 65..917 | 6..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:21:23 Download gff for
BS07088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15980360..15980953 | 6..600 | 99 | -> | Plus |
3L | 15981185..15981443 | 601..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:58:20 Download gff for
BS07088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15973460..15974053 | 6..600 | 99 | -> | Plus |
arm_3L | 15974285..15974543 | 601..859 | 100 | | Plus |
BS07088.complete Sequence
899 bp (899 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635725
> BS07088.complete
GAAGTTATCAGTCGACATGGCAGGAGTAAGTCAAGCTGATATCGAGGAGT
TGTACAACTTTATCCATCCCCTGGCCATCAAAGCGGGCGAGATCCTCATG
GAGGGCTACGAGATGGCCAGTAAAAACGTCTCAATCAAAGGCGATTTCTA
CGACGTGGTCACCGACTACGACAACAAGATTGAGGACTTTCTCATGGAGA
AAATATTGGCCAGATACCCGGATCACAAGTTCATCGGCGAGGAGGAGACG
GCTAAGAACAACAACGTGTCCGGAGAGCTGACGAATGCTCCCACCTGGAT
CATAGATCCCATCGATGGAACTTCGAACTTTATCAAGCAGATTCCACACG
TTTGCGTTTCAATCGGTTTGGCAATCAACAAACAAATCGTAGTGGGAGTA
ATCAACAATCCTGTCCAGAAAAAGCTCTTCACAACGAAACTGGGCCAAGG
CGCCTTTTGCAATGGCAAACCAATCCACGTGAGCAGCTGCGAGAGCGTTA
AGGATGCCAATGTGGCCTACGAAGTGTCCCTGCTGCATGTCCATTCGGTG
GCCAACAAGCATATCAAAAGGATCTACCATGTGGGATTGAATGCTAGACG
ACTTGTTGCCTACTCCTGTGTGGTGGATGAGCTGTGCATGGTGGCCGCTG
GCAATCTGGATGCCTTCTACATTGAGGACATGTATCCCTGGGATTGTGCC
GCCGGCTCCCTGTTGGTTAAGGAGGCGGGAGGCGTGGTAACACATCCCTT
TGGCGGACCATTCGACATAATGAAGCCGGATCTAATCTGCGCCGGCACAG
AGAAGTTGCGCAAGGAGATCGAAGACCTTCTGCGTAAGGGAGACCAGGAG
GAGTCCGTGGGAGGGAAGCCGGTGCAGAAGTAAAAGCTTTCTAGACCAT
BS07088.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17027-RB | 867 | CG17027-PB | 1..867 | 17..883 | 4335 | 100 | Plus |
CG17027-RA | 867 | CG17027-PA | 1..867 | 17..883 | 4335 | 100 | Plus |
CG17026-RA | 855 | CG17026-PA | 142..787 | 158..803 | 1070 | 77.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17027-RB | 1558 | CG17027-RB | 271..1137 | 17..883 | 4335 | 100 | Plus |
CG17027-RA | 1362 | CG17027-RA | 75..941 | 17..883 | 4335 | 100 | Plus |
CG17026-RA | 1004 | CG17026-RA | 232..877 | 158..803 | 1070 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15980370..15980953 | 17..600 | 2920 | 100 | Plus |
3L | 28110227 | 3L | 15981184..15981467 | 600..883 | 1420 | 100 | Plus |
3L | 28110227 | 3L | 15975599..15976039 | 158..598 | 735 | 77.8 | Plus |
3L | 28110227 | 3L | 15976117..15976301 | 619..803 | 355 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:58:36 has no hits.
BS07088.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:00 Download gff for
BS07088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:33 Download gff for
BS07088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 405..1284 | 6..890 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:30 Download gff for
BS07088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 75..939 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:00 Download gff for
BS07088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 405..1284 | 6..890 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:33 Download gff for
BS07088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17027-RA | 75..939 | 17..881 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:33 Download gff for
BS07088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15980370..15980953 | 17..600 | 100 | -> | Plus |
3L | 15981185..15981465 | 601..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:30 Download gff for
BS07088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15973470..15974053 | 17..600 | 100 | -> | Plus |
arm_3L | 15974285..15974565 | 601..881 | 100 | | Plus |
BS07088.pep Sequence
Translation from 16 to 882
> BS07088.pep
MAGVSQADIEELYNFIHPLAIKAGEILMEGYEMASKNVSIKGDFYDVVTD
YDNKIEDFLMEKILARYPDHKFIGEEETAKNNNVSGELTNAPTWIIDPID
GTSNFIKQIPHVCVSIGLAINKQIVVGVINNPVQKKLFTTKLGQGAFCNG
KPIHVSSCESVKDANVAYEVSLLHVHSVANKHIKRIYHVGLNARRLVAYS
CVVDELCMVAAGNLDAFYIEDMYPWDCAAGSLLVKEAGGVVTHPFGGPFD
IMKPDLICAGTEKLRKEIEDLLRKGDQEESVGGKPVQK*
BS07088.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17027-PB | 288 | CG17027-PB | 1..288 | 1..288 | 1510 | 100 | Plus |
CG17027-PA | 288 | CG17027-PA | 1..288 | 1..288 | 1510 | 100 | Plus |
CG17026-PA | 284 | CG17026-PA | 4..284 | 5..284 | 1170 | 77.6 | Plus |
CG17029-PB | 284 | CG17029-PB | 3..277 | 2..277 | 713 | 46.7 | Plus |
CG17029-PA | 284 | CG17029-PA | 3..277 | 2..277 | 713 | 46.7 | Plus |