Clone Sequence Records
BS07090.3prime Sequence
902 bp (736 high quality bases) assembled on 2006-01-06
> BS07090.3prime
ATGGTCTAGAAAGCTTCTATTTGAACAAGAAACTATAGGGATAACCCTGC
GCCTTCGAACGAAAAACGGACAACAGGAAGGAGAAGAACACGGTGAGGAG
CACCAAACCAGTCATCGCCATTATCCTGTTCTTGTTGTGAGCCTTTGGTG
TTCCCGATTCAATCAGCAGAATCATGCCCAGCACAATCATGGCATTCAGG
AACATGACGATATAGGTCTCCACCACCAGCTGGCCCTGCGAGGAGCCATG
GATGTAGGCCACGCCACCATTTTGCGACTTGTGGACCAGCGGTGGTCCAC
GGATATGATTCCACATTTGACCCGAGATCATGGCGAAGCAGAAGAATACT
GCGATGGCACCCCACAGATTCTTGTTGTACAAGAACTCCAAGTTATTTCG
CCGAATGTAAAGAAAACTTCCCACCAGGGCCACCAATGTGATCATGGCCA
CGGTGCCAGAATAGTTTGGTGGACGGAAAATGCGAATGGTGATGTCCGTT
CGCTCGGCAACGAATTTCGCAATAGAATCGGCGGCGAAGCCGACGCGATG
GATATCCATGGTGTCAGCTCCCTTTGGCTTGCCCTTGGCCGGGAAATGCA
TGAACACCGGGGCGGTGTTCAGGCGCAGAAGTTGGAAAACCTCGGAGCCG
TCATCGAAATCCACCATAGCAAAGAAGAGTTTGTTGGAGTAAGTCGAGGA
GAAGCGGTAGGAGTTGGCCACGATGGCGAACTCGTCGTGGGCGTGCCTAC
AGATCTGGCATTGTCTCGATGGAGCCAATGCGGTGAGCATTACGATCATC
GAGTAATTCCGTGGTGCACTCTTCACATACTCCCGAAACTTGGGTCCATT
GAAGCGGAGCAGCGGCTTTTTGGCGTTCATGTCCACCAGGTTTTGTACTT
TT
BS07090.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7830-PA | 993 | CG7830-RA | 108..993 | 902..17 | 4430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ostgamma-RA | 1245 | CG7830-RA | 231..1118 | 902..15 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8307147..8307853 | 196..902 | 3535 | 100 | Plus |
2L | 23513712 | 2L | 8306906..8307068 | 33..195 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:19:08 has no hits.
BS07090.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:51 Download gff for
BS07090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7830-PA | 108..993 | 17..902 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:02 Download gff for
BS07090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7830-PA | 108..993 | 17..902 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:48:43 Download gff for
BS07090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ostgamma-RA | 231..1124 | 8..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:40:16 Download gff for
BS07090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ostgamma-RA | 231..1124 | 8..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:40:16 Download gff for
BS07090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8306906..8307068 | 33..195 | 100 | <- | Plus |
2L | 8307147..8307853 | 196..902 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:48:43 Download gff for
BS07090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8306906..8307068 | 33..195 | 100 | <- | Plus |
arm_2L | 8307147..8307853 | 196..902 | 100 | | Plus |
BS07090.5prime Sequence
863 bp (751 high quality bases) assembled on 2006-01-06
> BS07090.5prime
GAAGTTATCAGTCGACATGAGACTGCTGCACAAGACGCTGCTCAGCGGTC
TGCTGGTAGTGGCGTTATTCGCTATTTACGCAGCCGCGCAATCAAAATCG
AAGACGGGACTCTCGCTGTCGGAAAAAGTACAAAACCTGGTGGACATGAA
CGCCAAAAAGCCGCTGCTCCGCTTCAATGGACCCAAGTTTCGGGAGTATG
TGAAGAGTGCACCACGGAATTACTCGATGATCGTAATGCTCACCGCATTG
GCTCCATCGAGACAATGCCAGATCTGTAGGCACGCCCACGACGAGTTCGC
CATCGTGGCCAACTCCTACCGCTTCTCCTCGACTTACTCCAACAAACTCT
TCTTTGCTATGGTGGATTTCGATGACGGCTCCGAGGTTTTCCAACTTCTG
CGCCTGAACACCGCCCCGGTGTTCATGCATTTCCCGGCCAAGGGCAAGCC
AAAGGGAGCTGACACCATGGATATCCATCGCGTCGGCTTCGCCGCCGATT
CTATTGCGAAATTCGTTGCCGAGCGAACGGACATCACCATTCGCATTTTC
CGTCCACCAAACTATTCTGGCACCGTGGCCATGATCACATTGGTGGCCCT
GGTGGGAAGTTTTCTTTACATTCGGCGAAATAACTTGGAGTTCTTGTACA
ACAAGAATCTGTGGGGTGCCATCGCAGTATTCTTCTGCTTCGCCATGATC
TCGGGTCAAATGTGGAATCATATCCGTGGACCACCGCTGGTCCACAAGTC
GCAAAATGGTGGCGTGGCCTACATCCATGGCTCCTCGCAGGGCCAGCTGG
TGGTGGAGACCTATATCGTCATGTTCCTGAATGCCATGATTGTGCTGGGC
ATGATTCTGCTGA
BS07090.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7830-PA | 993 | CG7830-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:49:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ostgamma-RA | 1245 | CG7830-RA | 124..970 | 17..863 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8307147..8307875 | 830..102 | 3645 | 100 | Minus |
2L | 23513712 | 2L | 8307983..8308069 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:49:33 has no hits.
BS07090.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:52 Download gff for
BS07090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7830-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:03 Download gff for
BS07090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7830-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:55 Download gff for
BS07090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ostgamma-RA | 122..969 | 14..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:26:00 Download gff for
BS07090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ostgamma-RA | 122..969 | 14..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:26:00 Download gff for
BS07090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8307037..8307068 | 831..862 | 100 | <- | Minus |
2L | 8307147..8307873 | 104..830 | 100 | <- | Minus |
2L | 8307983..8308071 | 14..103 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:55 Download gff for
BS07090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8307037..8307068 | 831..862 | 100 | <- | Minus |
arm_2L | 8307147..8307873 | 104..830 | 100 | <- | Minus |
arm_2L | 8307983..8308071 | 14..103 | 98 | | Minus |
BS07090.complete Sequence
1025 bp (1025 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635726
> BS07090.complete
GAAGTTATCAGTCGACATGAGACTGCTGCACAAGACGCTGCTCAGCGGTC
TGCTGGTAGTGGCGTTATTCGCTATTTACGCAGCCGCGCAATCAAAATCG
AAGACGGGACTCTCGCTGTCGGAAAAAGTACAAAACCTGGTGGACATGAA
CGCCAAAAAGCCGCTGCTCCGCTTCAATGGACCCAAGTTTCGGGAGTATG
TGAAGAGTGCACCACGGAATTACTCGATGATCGTAATGCTCACCGCATTG
GCTCCATCGAGACAATGCCAGATCTGTAGGCACGCCCACGACGAGTTCGC
CATCGTGGCCAACTCCTACCGCTTCTCCTCGACTTACTCCAACAAACTCT
TCTTTGCTATGGTGGATTTCGATGACGGCTCCGAGGTTTTCCAACTTCTG
CGCCTGAACACCGCCCCGGTGTTCATGCATTTCCCGGCCAAGGGCAAGCC
AAAGGGAGCTGACACCATGGATATCCATCGCGTCGGCTTCGCCGCCGATT
CTATTGCGAAATTCGTTGCCGAGCGAACGGACATCACCATTCGCATTTTC
CGTCCACCAAACTATTCTGGCACCGTGGCCATGATCACATTGGTGGCCCT
GGTGGGAAGTTTTCTTTACATTCGGCGAAATAACTTGGAGTTCTTGTACA
ACAAGAATCTGTGGGGTGCCATCGCAGTATTCTTCTGCTTCGCCATGATC
TCGGGTCAAATGTGGAATCATATCCGTGGACCACCGCTGGTCCACAAGTC
GCAAAATGGTGGCGTGGCCTACATCCATGGCTCCTCGCAGGGCCAGCTGG
TGGTGGAGACCTATATCGTCATGTTCCTGAATGCCATGATTGTGCTGGGC
ATGATTCTGCTGATTGAATCGGGAACACCAAAGGCTCACAACAAGAACAG
GATAATGGCGATGACTGGTTTGGTGCTCCTCACCGTGTTCTTCTCCTTCC
TGTTGTCCGTTTTTCGTTCGAAGGCGCAGGGTTATCCCTATAGTTTCTTG
TTCAAATAGAAGCTTTCTAGACCAT
BS07090.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ostgamma-RA | 993 | CG7830-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ostgamma-RA | 1245 | CG7830-RA | 124..1118 | 17..1011 | 4975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8307147..8307875 | 830..102 | 3645 | 100 | Minus |
2L | 23513712 | 2L | 8306906..8307068 | 993..831 | 815 | 100 | Minus |
2L | 23513712 | 2L | 8307983..8308069 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:51:28 has no hits.
BS07090.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:01 Download gff for
BS07090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7830-RA | 1..993 | 17..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:35 Download gff for
BS07090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7830-RA | 118..1120 | 14..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:53 Download gff for
BS07090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ostgamma-RA | 124..1110 | 17..1003 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:01 Download gff for
BS07090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7830-RA | 118..1120 | 14..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:18 Download gff for
BS07090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ostgamma-RA | 124..1110 | 17..1003 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:18 Download gff for
BS07090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8306900..8307068 | 831..1001 | 97 | <- | Minus |
2L | 8307147..8307873 | 104..830 | 100 | <- | Minus |
2L | 8307983..8308069 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:53 Download gff for
BS07090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8306900..8307068 | 831..1001 | 97 | <- | Minus |
arm_2L | 8307147..8307873 | 104..830 | 100 | <- | Minus |
arm_2L | 8307983..8308069 | 17..103 | 100 | | Minus |
BS07090.pep Sequence
Translation from 16 to 1008
> BS07090.pep
MRLLHKTLLSGLLVVALFAIYAAAQSKSKTGLSLSEKVQNLVDMNAKKPL
LRFNGPKFREYVKSAPRNYSMIVMLTALAPSRQCQICRHAHDEFAIVANS
YRFSSTYSNKLFFAMVDFDDGSEVFQLLRLNTAPVFMHFPAKGKPKGADT
MDIHRVGFAADSIAKFVAERTDITIRIFRPPNYSGTVAMITLVALVGSFL
YIRRNNLEFLYNKNLWGAIAVFFCFAMISGQMWNHIRGPPLVHKSQNGGV
AYIHGSSQGQLVVETYIVMFLNAMIVLGMILLIESGTPKAHNKNRIMAMT
GLVLLTVFFSFLLSVFRSKAQGYPYSFLFK*
BS07090.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ostgamma-PA | 330 | CG7830-PA | 1..330 | 1..330 | 1687 | 100 | Plus |