Clone BS07090 Report

Search the DGRC for BS07090

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:70
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptOstgamma-RA
Protein status:BS07090.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07090.3prime Sequence

902 bp (736 high quality bases) assembled on 2006-01-06

> BS07090.3prime
ATGGTCTAGAAAGCTTCTATTTGAACAAGAAACTATAGGGATAACCCTGC
GCCTTCGAACGAAAAACGGACAACAGGAAGGAGAAGAACACGGTGAGGAG
CACCAAACCAGTCATCGCCATTATCCTGTTCTTGTTGTGAGCCTTTGGTG
TTCCCGATTCAATCAGCAGAATCATGCCCAGCACAATCATGGCATTCAGG
AACATGACGATATAGGTCTCCACCACCAGCTGGCCCTGCGAGGAGCCATG
GATGTAGGCCACGCCACCATTTTGCGACTTGTGGACCAGCGGTGGTCCAC
GGATATGATTCCACATTTGACCCGAGATCATGGCGAAGCAGAAGAATACT
GCGATGGCACCCCACAGATTCTTGTTGTACAAGAACTCCAAGTTATTTCG
CCGAATGTAAAGAAAACTTCCCACCAGGGCCACCAATGTGATCATGGCCA
CGGTGCCAGAATAGTTTGGTGGACGGAAAATGCGAATGGTGATGTCCGTT
CGCTCGGCAACGAATTTCGCAATAGAATCGGCGGCGAAGCCGACGCGATG
GATATCCATGGTGTCAGCTCCCTTTGGCTTGCCCTTGGCCGGGAAATGCA
TGAACACCGGGGCGGTGTTCAGGCGCAGAAGTTGGAAAACCTCGGAGCCG
TCATCGAAATCCACCATAGCAAAGAAGAGTTTGTTGGAGTAAGTCGAGGA
GAAGCGGTAGGAGTTGGCCACGATGGCGAACTCGTCGTGGGCGTGCCTAC
AGATCTGGCATTGTCTCGATGGAGCCAATGCGGTGAGCATTACGATCATC
GAGTAATTCCGTGGTGCACTCTTCACATACTCCCGAAACTTGGGTCCATT
GAAGCGGAGCAGCGGCTTTTTGGCGTTCATGTCCACCAGGTTTTGTACTT
TT

BS07090.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7830-PA 993 CG7830-RA 108..993 902..17 4430 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ostgamma-RA 1245 CG7830-RA 231..1118 902..15 4440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8307147..8307853 196..902 3535 100 Plus
2L 23513712 2L 8306906..8307068 33..195 815 100 Plus
Blast to na_te.dros performed on 2015-02-03 12:19:08 has no hits.

BS07090.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:51 Download gff for BS07090.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7830-PA 108..993 17..902 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:02 Download gff for BS07090.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7830-PA 108..993 17..902 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:48:43 Download gff for BS07090.3prime
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 231..1124 8..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:40:16 Download gff for BS07090.3prime
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 231..1124 8..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:40:16 Download gff for BS07090.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8306906..8307068 33..195 100 <- Plus
2L 8307147..8307853 196..902 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:48:43 Download gff for BS07090.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8306906..8307068 33..195 100 <- Plus
arm_2L 8307147..8307853 196..902 100   Plus

BS07090.5prime Sequence

863 bp (751 high quality bases) assembled on 2006-01-06

> BS07090.5prime
GAAGTTATCAGTCGACATGAGACTGCTGCACAAGACGCTGCTCAGCGGTC
TGCTGGTAGTGGCGTTATTCGCTATTTACGCAGCCGCGCAATCAAAATCG
AAGACGGGACTCTCGCTGTCGGAAAAAGTACAAAACCTGGTGGACATGAA
CGCCAAAAAGCCGCTGCTCCGCTTCAATGGACCCAAGTTTCGGGAGTATG
TGAAGAGTGCACCACGGAATTACTCGATGATCGTAATGCTCACCGCATTG
GCTCCATCGAGACAATGCCAGATCTGTAGGCACGCCCACGACGAGTTCGC
CATCGTGGCCAACTCCTACCGCTTCTCCTCGACTTACTCCAACAAACTCT
TCTTTGCTATGGTGGATTTCGATGACGGCTCCGAGGTTTTCCAACTTCTG
CGCCTGAACACCGCCCCGGTGTTCATGCATTTCCCGGCCAAGGGCAAGCC
AAAGGGAGCTGACACCATGGATATCCATCGCGTCGGCTTCGCCGCCGATT
CTATTGCGAAATTCGTTGCCGAGCGAACGGACATCACCATTCGCATTTTC
CGTCCACCAAACTATTCTGGCACCGTGGCCATGATCACATTGGTGGCCCT
GGTGGGAAGTTTTCTTTACATTCGGCGAAATAACTTGGAGTTCTTGTACA
ACAAGAATCTGTGGGGTGCCATCGCAGTATTCTTCTGCTTCGCCATGATC
TCGGGTCAAATGTGGAATCATATCCGTGGACCACCGCTGGTCCACAAGTC
GCAAAATGGTGGCGTGGCCTACATCCATGGCTCCTCGCAGGGCCAGCTGG
TGGTGGAGACCTATATCGTCATGTTCCTGAATGCCATGATTGTGCTGGGC
ATGATTCTGCTGA

BS07090.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7830-PA 993 CG7830-RA 1..847 17..863 4235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Ostgamma-RA 1245 CG7830-RA 124..970 17..863 4235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8307147..8307875 830..102 3645 100 Minus
2L 23513712 2L 8307983..8308069 103..17 435 100 Minus
Blast to na_te.dros performed on 2015-02-10 04:49:33 has no hits.

BS07090.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:01:52 Download gff for BS07090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7830-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:03 Download gff for BS07090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7830-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:55 Download gff for BS07090.5prime
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 122..969 14..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:26:00 Download gff for BS07090.5prime
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 122..969 14..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:26:00 Download gff for BS07090.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8307037..8307068 831..862 100 <- Minus
2L 8307147..8307873 104..830 100 <- Minus
2L 8307983..8308071 14..103 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:55 Download gff for BS07090.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8307037..8307068 831..862 100 <- Minus
arm_2L 8307147..8307873 104..830 100 <- Minus
arm_2L 8307983..8308071 14..103 98   Minus

BS07090.complete Sequence

1025 bp (1025 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635726

> BS07090.complete
GAAGTTATCAGTCGACATGAGACTGCTGCACAAGACGCTGCTCAGCGGTC
TGCTGGTAGTGGCGTTATTCGCTATTTACGCAGCCGCGCAATCAAAATCG
AAGACGGGACTCTCGCTGTCGGAAAAAGTACAAAACCTGGTGGACATGAA
CGCCAAAAAGCCGCTGCTCCGCTTCAATGGACCCAAGTTTCGGGAGTATG
TGAAGAGTGCACCACGGAATTACTCGATGATCGTAATGCTCACCGCATTG
GCTCCATCGAGACAATGCCAGATCTGTAGGCACGCCCACGACGAGTTCGC
CATCGTGGCCAACTCCTACCGCTTCTCCTCGACTTACTCCAACAAACTCT
TCTTTGCTATGGTGGATTTCGATGACGGCTCCGAGGTTTTCCAACTTCTG
CGCCTGAACACCGCCCCGGTGTTCATGCATTTCCCGGCCAAGGGCAAGCC
AAAGGGAGCTGACACCATGGATATCCATCGCGTCGGCTTCGCCGCCGATT
CTATTGCGAAATTCGTTGCCGAGCGAACGGACATCACCATTCGCATTTTC
CGTCCACCAAACTATTCTGGCACCGTGGCCATGATCACATTGGTGGCCCT
GGTGGGAAGTTTTCTTTACATTCGGCGAAATAACTTGGAGTTCTTGTACA
ACAAGAATCTGTGGGGTGCCATCGCAGTATTCTTCTGCTTCGCCATGATC
TCGGGTCAAATGTGGAATCATATCCGTGGACCACCGCTGGTCCACAAGTC
GCAAAATGGTGGCGTGGCCTACATCCATGGCTCCTCGCAGGGCCAGCTGG
TGGTGGAGACCTATATCGTCATGTTCCTGAATGCCATGATTGTGCTGGGC
ATGATTCTGCTGATTGAATCGGGAACACCAAAGGCTCACAACAAGAACAG
GATAATGGCGATGACTGGTTTGGTGCTCCTCACCGTGTTCTTCTCCTTCC
TGTTGTCCGTTTTTCGTTCGAAGGCGCAGGGTTATCCCTATAGTTTCTTG
TTCAAATAGAAGCTTTCTAGACCAT

BS07090.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ostgamma-RA 993 CG7830-PA 1..993 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Ostgamma-RA 1245 CG7830-RA 124..1118 17..1011 4975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8307147..8307875 830..102 3645 100 Minus
2L 23513712 2L 8306906..8307068 993..831 815 100 Minus
2L 23513712 2L 8307983..8308069 103..17 435 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:51:28 has no hits.

BS07090.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:01 Download gff for BS07090.complete
Subject Subject Range Query Range Percent Splice Strand
CG7830-RA 1..993 17..1009 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:35 Download gff for BS07090.complete
Subject Subject Range Query Range Percent Splice Strand
CG7830-RA 118..1120 14..1018 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:53 Download gff for BS07090.complete
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 124..1110 17..1003 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:01 Download gff for BS07090.complete
Subject Subject Range Query Range Percent Splice Strand
CG7830-RA 118..1120 14..1018 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:18 Download gff for BS07090.complete
Subject Subject Range Query Range Percent Splice Strand
Ostgamma-RA 124..1110 17..1003 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:18 Download gff for BS07090.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8306900..8307068 831..1001 97 <- Minus
2L 8307147..8307873 104..830 100 <- Minus
2L 8307983..8308069 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:53 Download gff for BS07090.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8306900..8307068 831..1001 97 <- Minus
arm_2L 8307147..8307873 104..830 100 <- Minus
arm_2L 8307983..8308069 17..103 100   Minus

BS07090.pep Sequence

Translation from 16 to 1008

> BS07090.pep
MRLLHKTLLSGLLVVALFAIYAAAQSKSKTGLSLSEKVQNLVDMNAKKPL
LRFNGPKFREYVKSAPRNYSMIVMLTALAPSRQCQICRHAHDEFAIVANS
YRFSSTYSNKLFFAMVDFDDGSEVFQLLRLNTAPVFMHFPAKGKPKGADT
MDIHRVGFAADSIAKFVAERTDITIRIFRPPNYSGTVAMITLVALVGSFL
YIRRNNLEFLYNKNLWGAIAVFFCFAMISGQMWNHIRGPPLVHKSQNGGV
AYIHGSSQGQLVVETYIVMFLNAMIVLGMILLIESGTPKAHNKNRIMAMT
GLVLLTVFFSFLLSVFRSKAQGYPYSFLFK*

BS07090.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Ostgamma-PA 330 CG7830-PA 1..330 1..330 1687 100 Plus