Clone Sequence Records
BS07095.3prime Sequence
954 bp (779 high quality bases) assembled on 2006-01-06
> BS07095.3prime
ATGGTCTAGAAAGCTTTTAGACCTCAGTGGGCAAACTCTGGCTCTGGCAG
CCCGCCTGCAGTTTCTTGGAGCTGCGGAAGAACATGTCGAAGAGCCTGGC
GCGCCGATTCTGGAACTTTTGGGGCATGGTTGGTGTTATAGCTATGTGCT
CAACGATGGTGATGCCCCTCTGCAGCTTGGGGCGCTGCGGTCGTGTGGGC
GGTGGAGCAACTGCCACAGTAGGTGGTGGTGTTGCCGGTGGCTGCTCATC
GGAGTCCGCTGAGCCCCTGGCGCCACCGAAATTGATGATGGTGCTGCAGC
TGCTGTTGGGCCTTAACGTCAAGGTCGTATGCACCGGCACTTGACTGACC
AGGGAACTCTGGGGGGTGAGATACTTGCAGCTGTTGCTGCTGTACTGCGA
CAACTTGCTGCTGTTGCGCTGCAATTGTGCACCACTTGCAGCAGGACCTG
CGGTGCCATTGGTCTTTACACTGCTGCTGCAGTTGCGCTGCAGGCCCGAC
GACGAATCCAGACCAAACAGCCGCTTGACTCCTCGCCTCACCCTCTTGTT
CCTGTAGGCGAAGATGAATGGCGAACTGAGATTGGCCAGCAGGATCATGA
AGATGGCCAGCTGGGAGGATCCGCCAAAGTTAGCAGCCGACAGTCGCGAT
TGCAGGAGTACCAGCAGTCCGAAGGGCAGGTACGAGACCACAAACATCAC
CACCACCAGGATGCTGATGCGGGCTGCTCTCGACTCCTCACGGTATTTGA
ATAGCGAACTGGCGTTGCTCAAACGGTGTCGCAAGGAGCTCATGTAACTC
AGAGCCTTGGGGGAGGCATGAATGGCGGGTATCTGGAGGGCGTGGCCGTG
TTGCTGGTGGCGCGGCGAACTGAAGTGCGGATGATGTTGCTGGTGGTGAT
GATGCTGTTGCTGCTGATGTTGCAGGTGCAATTGCTGCTGCTGCTGCCGC
TGGG
BS07095.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12290-PA | 2397 | CG12290-RA | 1460..2397 | 954..17 | 4690 | 100 | Minus |
| CG5461-PA | 3621 | bun-RA | 48..89 | 923..882 | 135 | 92.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:22:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12290-RB | 4453 | CG12290-RB | 1917..2855 | 954..16 | 4695 | 100 | Minus |
| CG12290-RA | 3082 | CG12290-RA | 1917..2855 | 954..16 | 4695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26232164..26233102 | 954..16 | 4695 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:22:34 has no hits.
BS07095.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:00 Download gff for
BS07095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12290-PA | 1460..2397 | 17..954 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:15 Download gff for
BS07095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12290-PA | 1460..2397 | 17..954 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:23:18 Download gff for
BS07095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12290-RA | 1917..2855 | 16..954 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:41:54 Download gff for
BS07095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12290-RA | 1917..2855 | 16..954 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:41:54 Download gff for
BS07095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26232164..26233102 | 16..954 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:23:18 Download gff for
BS07095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22057886..22058824 | 16..954 | 100 | | Minus |
BS07095.5prime Sequence
914 bp (743 high quality bases) assembled on 2006-01-06
> BS07095.5prime
GAAGTTATCAGTCGACATGGCCATAGACCTCCTGATCCTGGCCCTGCTGC
TCGTCTCGTTCCTGATCAACCTGCTGGCGCTGTGTGCCTTTTGGATAACG
CCTGGCTTGAGGACCACCGCCAATCGCTTTACGATCAACCTGCTGGCCAT
CAATCTCATTGGTTGCTGCATCTTGGCCCCCACTTTGTTCCTGGGACTGC
CGGGAAAGTCTGCGGAGGCATCCACTTCCAACGCCGAGACCCTGGAGTTC
TTCTCGAAGCCGGGAAACCATCAGGTGATACTTCGTCGCAATGGCCAGCT
GGTGGAACAGGACGGCGTGGTGGTGCGAAGGAACATCAGCGAAAACGGCG
ATACGGTGGAGACCTTCTTCAAGTGCAATGCCACCTACTGTCGCGAGTTG
ACCATCGATGAGCGCGGAGATGGTGGCTTTGTCATCACGGAAACCGAGAC
ACACGAAGAGAATCTCTCGGCCTTTGAGAGCTTACCCACGGAGGCTCCCA
TTTTGCCGCCCGTCCAACTGAGATGTTGGTCCATAGACATGACTGCTGCG
CTGGGAGCTCTGGCAGTACTGCTCGTGGTGGGGGACACCTGGTGTGCCGT
TACGGATCCCCTGCGCTACCACAGTCGCATTTCGGGCGTGAAAACCTGGA
TCTTCATAGCACTCACCTGGGTGGTGGGCATACTCTTTGGAGCCCTTTCC
GCCTTCCGAGTTTTGGACTTTGAGGCGGACGCCCTGTTCAGCAGACAACG
CCGCCTGGCAGTCACGTACTTCAACATCAGCAGCACCAATAGTATTTTCG
GAGTGGTGTACGCCAGTGTCTACTTCATCGTGATCATCCTCCTGCCCTTC
GGCTTCGTGTGCGGAATGTACTGGAGGATATTCAGTGAGGCGCGCGGGAA
TGGGCTGCGCATGC
BS07095.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12290-PA | 2397 | CG12290-RA | 1..898 | 17..914 | 4465 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12290-RB | 4453 | CG12290-RB | 458..1355 | 17..914 | 4475 | 99.9 | Plus |
| CG12290-RA | 3082 | CG12290-RA | 458..1355 | 17..914 | 4475 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26230705..26231602 | 17..914 | 4475 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:37:16 has no hits.
BS07095.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:01 Download gff for
BS07095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12290-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:17 Download gff for
BS07095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12290-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:26:39 Download gff for
BS07095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12290-RA | 456..1355 | 14..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:44 Download gff for
BS07095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12290-RA | 456..1355 | 14..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:44 Download gff for
BS07095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26230703..26231602 | 14..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:26:39 Download gff for
BS07095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22056425..22057324 | 14..914 | 99 | | Plus |
BS07095.complete Sequence
2429 bp assembled on 2008-01-02
GenBank Submission: FJ635727
> BS07095.complete
GAAGTTATCAGTCGACATGGCCATAGACCTCCTGATCCTGGCCCTGCTGC
TCGTCTCGTTCCTGATCAACCTGCTGGCGCTGTGTGCCTTTTGGATAACG
CCTGGCTTGAGGACCACCGCCAATCGCTTTACGATCAACCTGCTGGCCAT
CAATCTCATTGGTTGCTGCATCTTGGCCCCCACTTTGTTCCTGGGACTGC
CGGGAAAGTCTGCGGAGGCATCCACTTCCAACGCCGAGACCCTGGAGTTC
TTCTCGAAGCCGGGAAACCATCAGGTGATACTTCGTCGCAATGGCCAGCT
GGTGGAACAGGACGGCGTGGTGGTGCGAAGGAACATCAGCGAAAACGGCG
ATACGGTGGAGACCTTCTTCAAGTGCAATGCCACCTACTGTCGCGAGTTG
ACCATCGATGAGCGCGGAGATGGTGGCTTTGTCATCACGGAAACCGAGAC
ACACGAAGAGAATCTCTCGGCCTTTGAGAGCTTACCCACGGAGGCTCCCA
TTTTGCCGCCCGTCCAACTGAGATGTTGGTCCATAGACATGACTGCTGCG
CTGGGAGCTCTGGCAGTACTGCTCGTGGTGGGGGACACCTGGTGTGCCGT
TACGGATCCCCTGCGCTACCACAGTCGCATTTCGGGCGTGAAAACCTGGA
TCTTCATAGCACTCACCTGGGTGGTGGGCATACTCTTTGGAGCCCTTTCC
GCCTTCCGAGTTTTGGACTTTGAGGCGGACGCCCTGTTCAGCAGACAACG
CCGCCTGGCAGTCACGTACTTCAACATCAGCAGCACCAATAGTATTTTCG
GAGTGGTGTACGCCAGTGTCTACTTCATCGTGATCATCCTCCTGCCCTTC
GGCTTCGTGTGCGGAATGTACTGGAGGATATTCAGTGAGGCGCGCGGAAA
TGGGCTGCGCATGCGCCAGAATGGCTCTTCGCCGCTGCTGCAGAGCGCCT
TGAATCTGACGGCTGGCCAGCAGGCGGCTCAAGCCAACCAGTTCTCCAAT
AGCTTGTGTGTTCATCGGCATTCCATATCCTCGGCCAGTTCGCATGGCGG
CAACAGCAGCTTGGGCTTGGGCGGTCTGCAAATGCAAATTGATCAGCGCC
AACAGCCGAGGAGTTCGCCCAGTTGTCTCCGTCGGGACTCGGCCGCGAAA
GTACTTTTGCCCACCATCTCGGATGATGGTGGCTCAGATGCGGAAAGTGG
AGCCGGAGTTCAACTGATGCCCGTACAGGAGCACTCACTGTCAGATAGAA
ATCAGAACATTATGCTTACTCTGCAAACAGCCAGTGGTGAAATAAAGAGG
AACTACTCCGCCAGACAGCTGCCCCTGTTGGGCACTTCTTCGCAGGATCT
GAGGGAGACTAATCGTCTGCAGGGCATACGCCAGGTGCACAGTTCGCCCA
ATCTCCACAAGTACACGGAACTGCGCCAGGACTCGCTCAGTGAGGAGTGT
GGTTCTCCGCATCTTTTGGGTCACGCCCAGCGGCAGCAGCAGCAGCAATT
GCACCTGCAACATCAGCAGCAACAGCATCATCACCACCAGCAACATCATC
CGCACTTCAGTTCGCCGCGCCACCAGCAACACGGCCACGCCCTCCAGATA
CCCGCCATTCATGCCTCCCCCAAGGCTCTGAGTTACATGAGCTCCTTGCG
ACACCGTTTGAGCAACGCCAGTTCGCTATTCAAATACCGTGAGGAGTCGA
GAGCAGCCCGCATCAGCATCCTGGTGGTGGTGATGTTTGTGGTCTCGTAC
CTGCCCTTCGGACTGCTGGTACTCCTGCAATCGCGACTGTCGGCTGCTAA
CTTTGGCGGATCCTCCCAGCTGGCCATCTTCATGATCCTGCTGGCCAATC
TCAGTTCGCCATTCATCTTCGCCTACAGGAACAAGAGGGTGAGGCGAGGA
GTCAAGCGGCTGTTTGGTCTGGATTCGTCGTCGGGCCTGCAGCGCAACTG
CAGCAGCAGTGTAAAGACCAATGGCACCGCAGGTCCTGCTGCAAGTGGTG
CACAATTGCAGCGCAACAGCAGCAAGTTGTCGCAGTACAGCAGCAACAGC
TGCAAGTATCTCACCCCCCAGAGTTCCCTGGTCAGTCAAGTGCCGGTGCA
TACGACCTTGACGTTAAGGCCCAACAGCAGCTGCAGCACCATCATCAATT
TCGGTGGCGCCAGGGGCTCAGCGGACTCCGATGAGCAGCCACCGGCAACA
CCACCACCTACTGTGGCAGTTGCTCCACCGCCCACACGACCGCAGCGCCC
CAAGCTGCAGAGGGGCATCACCATCGTTGAGCACATAGCTATAACACCAA
CCATGCCCCAAAAGTTCCAGAATCGGCGCGCCAGGCTCTTCGACATGTTC
TTCCGCAGCTCCAAGAAACTGCAGGCGGGCTGCCAGAGCCAGAGTTTGCC
CACTGAGGTCTAAAAGCTTTCTAGACCAT
BS07095.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12290-RB | 2397 | CG12290-PB | 1..2397 | 17..2413 | 11985 | 100 | Plus |
| CG12290-RA | 2397 | CG12290-PA | 1..2397 | 17..2413 | 11985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12290-RB | 4453 | CG12290-RB | 458..2855 | 17..2414 | 11990 | 100 | Plus |
| CG12290-RA | 3082 | CG12290-RA | 458..2855 | 17..2414 | 11990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26230705..26233102 | 17..2414 | 11990 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:02:43 has no hits.
BS07095.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:51 Download gff for
BS07095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12290-RA | 1..2397 | 17..2413 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:36 Download gff for
BS07095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12290-RA | 454..2848 | 17..2411 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:21 Download gff for
BS07095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12290-RA | 458..2852 | 17..2411 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:51 Download gff for
BS07095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12290-RA | 452..2851 | 14..2414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:23 Download gff for
BS07095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12290-RA | 458..2852 | 17..2411 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:23 Download gff for
BS07095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26230705..26233099 | 17..2411 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:21 Download gff for
BS07095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22056427..22058821 | 17..2411 | 100 | | Plus |
BS07095.pep Sequence
Translation from 16 to 2412
> BS07095.pep
MAIDLLILALLLVSFLINLLALCAFWITPGLRTTANRFTINLLAINLIGC
CILAPTLFLGLPGKSAEASTSNAETLEFFSKPGNHQVILRRNGQLVEQDG
VVVRRNISENGDTVETFFKCNATYCRELTIDERGDGGFVITETETHEENL
SAFESLPTEAPILPPVQLRCWSIDMTAALGALAVLLVVGDTWCAVTDPLR
YHSRISGVKTWIFIALTWVVGILFGALSAFRVLDFEADALFSRQRRLAVT
YFNISSTNSIFGVVYASVYFIVIILLPFGFVCGMYWRIFSEARGNGLRMR
QNGSSPLLQSALNLTAGQQAAQANQFSNSLCVHRHSISSASSHGGNSSLG
LGGLQMQIDQRQQPRSSPSCLRRDSAAKVLLPTISDDGGSDAESGAGVQL
MPVQEHSLSDRNQNIMLTLQTASGEIKRNYSARQLPLLGTSSQDLRETNR
LQGIRQVHSSPNLHKYTELRQDSLSEECGSPHLLGHAQRQQQQQLHLQHQ
QQQHHHHQQHHPHFSSPRHQQHGHALQIPAIHASPKALSYMSSLRHRLSN
ASSLFKYREESRAARISILVVVMFVVSYLPFGLLVLLQSRLSAANFGGSS
QLAIFMILLANLSSPFIFAYRNKRVRRGVKRLFGLDSSSGLQRNCSSSVK
TNGTAGPAASGAQLQRNSSKLSQYSSNSCKYLTPQSSLVSQVPVHTTLTL
RPNSSCSTIINFGGARGSADSDEQPPATPPPTVAVAPPPTRPQRPKLQRG
ITIVEHIAITPTMPQKFQNRRARLFDMFFRSSKKLQAGCQSQSLPTEV*
BS07095.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12290-PB | 798 | CG12290-PB | 1..798 | 1..798 | 4085 | 100 | Plus |
| CG12290-PA | 798 | CG12290-PA | 1..798 | 1..798 | 4085 | 100 | Plus |
