Clone Sequence Records
BS07106.3prime Sequence
833 bp (831 high quality bases) assembled on 2006-01-06
> BS07106.3prime
ATGGTCTAGAAAGCTTCTACTCCACATTGAAGACAACACCCTGGGCGCAG
GCCAATTCTCCGGAGTGATTGACTGTAATGGTGGCCCGCTTGCAATACTG
CTTCCAGGCATCGGATCCGGACTCGCGACCTCCTCCAGTGGCTTTTTCGC
CTCCGAAAGCTCCACCAATCTCGGCGCCGTTGGTGGTGGTGTTGATGTTA
ACTATACCGCAATCGGAACCCTTGGCTCCAATCCACTTGAACGCCTGCCC
GATGTTCTCCGTGAAAATGGCAGAGGATAAGCCCTGTTCCACCTCATTGT
TCCATTCGATGGCCTGGTCCACGTTTTTGGCTTTGAGGATGTACACAATT
GGTGCAAAGGTTTCGCGATGGACAACGCTGGCATCGTGCGGCAATCCAGT
GATCACTGTGGGCTCTACGTAAAAACCATCCCGCTGGATGACATTACCTC
CGAAGGCCACCGTTCCTCCTAAGGATTTCGCTTCCGCGATGGCCGCCTTG
TAGTTCTCCACGTTTTGTTGCGTGTGCACGGGACCCACCAGAGTTTGAGC
TTCGAGCTGGTGTCCAATCTTGGAAATTAGCTGCTTATATTTACCAACCA
GCTCCTTTACGAACTGATCGTGCAGCTTTTCGTGGACAATAATCCTCCTG
GTGGTGGTGCATCTTTGACCACTGGTGCCAATGCAGCCGAAAAGTGCGGC
GTCCAGGGCCATCTTCACGTTGGCAGATTCATCGATGATTAGGGCATTAT
TGCCGCCTAGCTCGAGGATCACCTTGCCGAATCTGCGCTGCACTTCAACA
CCCACATCCCGACCAGTTTGGCAGCTGCCGGTG
BS07106.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9629-PA | 1623 | CG9629-RA | 807..1623 | 833..17 | 4085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:10:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9629-RA | 2053 | CG9629-RA | 873..1691 | 833..15 | 4095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19266835..19267653 | 15..833 | 4095 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:10:22 has no hits.
BS07106.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:15 Download gff for
BS07106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-PA | 807..1623 | 17..833 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:35 Download gff for
BS07106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-PA | 807..1623 | 17..833 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:21:21 Download gff for
BS07106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 873..1691 | 15..833 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:49:24 Download gff for
BS07106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 873..1691 | 15..833 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:49:24 Download gff for
BS07106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19266835..19267653 | 15..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:21:21 Download gff for
BS07106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19259935..19260753 | 15..833 | 100 | | Plus |
BS07106.5prime Sequence
899 bp (796 high quality bases) assembled on 2006-01-06
> BS07106.5prime
GAAGTTATCAGTCGACATGTTGGCACAATTGAGAAATATTTCGAAGCTGG
CGCTGCCGCGCCGCCTCGTTACCCAAACCGCCAGCTACTCATCGTCCTCG
TCATATCTCATTGACCAGCCGGAGTACAGTTTCCTGAAAGAATTGGGACT
GGAGCGCGACAATCCAGGTGTTTATTCGGGTCAGTGGCAGGGTCGTGGGC
CATCCGTTACCAGCTACGATCCCGGAACTGGTCAACCGATTGCCAAAGTG
CGTCAGGGAAATGTCCAGGAGCTCGAGCATACCATCGGGCTGGCGGTGGA
AGCCTACAAGCAGTGGCGACAGGTTCCAGCTCCCGTTCGCGGCGAAATAG
TGCGCCAAATCGGCGATGAGCTGAGAAAGTACAAGGAACCACTGGGAAAG
CTCGTCTCCCTGGAGGTGGGCAAAATCTACAGCGAGGGACAGGGCGAGGT
TCAGGAGTTCATAGATATCTGCGACTATGCGGTTGGCCTCTCAAGGATTT
ACTCCGGCCAGCTGATCAACTCGGAGCGTGCGGATCATTCGATTCTGGAG
GCCTGGCGTCCGCTGGGAGTGGTGGGCGTTATTTCGGCCTACAATTTTCC
CAATGCTGTGTTCGGCTGGAATGCTGCCATCGCCCTAACCACCGGCAACA
GTGTGCTGTGGAAAGGAGCTCCCAGCACTCCCTTGGTCTCGGTGGCGACC
ACAAAAATTGTGGCTGAAGTGCTGCGTAGGAACAATCTGCCGCCGGTGGT
GACCCTCTGCCAAGGAGGAACCGATGTTGGTCAGACCTTGGTGGCTGATA
AGAGAGTTAACCTCGTTTCCTTCACCGGCAGCTGCCAAACTGGTCGGGAT
GTGGGTGTTGAAGTGCAGCGCAGATTCGGCAAGGTGATCCTCGAGCTAG
BS07106.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9629-PA | 1623 | CG9629-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9629-RA | 2053 | CG9629-RA | 65..949 | 15..899 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19267577..19268460 | 899..16 | 4420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:51:56 has no hits.
BS07106.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:17 Download gff for
BS07106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:36 Download gff for
BS07106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:05 Download gff for
BS07106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 65..949 | 15..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:05:31 Download gff for
BS07106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 65..949 | 15..899 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:05:31 Download gff for
BS07106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19267577..19268460 | 16..899 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:05 Download gff for
BS07106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19260677..19261560 | 16..899 | 100 | | Minus |
BS07106.complete Sequence
1655 bp (1655 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635729
> BS07106.complete
GAAGTTATCAGTCGACATGTTGGCACAATTGAGAAATATTTCGAAGCTGG
CGCTGCCGCGCCGCCTCGTTACCCAAACCGCCAGCTACTCATCGTCCTCG
TCATATCTCATTGACCAGCCGGAGTACAGTTTCCTGAAAGAATTGGGACT
GGAGCGCGACAATCCAGGTGTTTATTCGGGTCAGTGGCAGGGTCGTGGGC
CATCCGTTACCAGCTACGATCCCGGAACTGGTCAACCGATTGCCAAAGTG
CGTCAGGGAAATGTCCAGGAGCTCGAGCATACCATCGGGCTGGCGGTGGA
AGCCTACAAGCAGTGGCGACAGGTTCCAGCTCCCGTTCGCGGCGAAATAG
TGCGCCAAATCGGCGATGAGCTGAGAAAGTACAAGGAACCACTGGGAAAG
CTCGTCTCCCTGGAGGTGGGCAAAATCTACAGCGAGGGACAGGGCGAGGT
TCAGGAGTTCATAGATATCTGCGACTATGCGGTTGGCCTCTCAAGGATTT
ACTCCGGCCAGCTGATCAACTCGGAGCGTGCGGATCATTCGATTCTGGAG
GCCTGGCGTCCGCTGGGAGTGGTGGGCGTTATTTCGGCCTACAATTTTCC
CAATGCTGTGTTCGGCTGGAATGCTGCCATCGCCCTAACCACCGGCAACA
GTGTGCTGTGGAAAGGAGCTCCCAGCACTCCCTTGGTCTCGGTGGCGACC
ACAAAAATTGTGGCTGAAGTGCTGCGTAGGAACAATCTGCCGCCGGTGGT
GACCCTCTGCCAAGGAGGAACCGATGTTGGTCAGACCTTGGTGGCTGATA
AGAGAGTTAACCTCGTTTCCTTCACCGGCAGCTGCCAAACTGGTCGGGAT
GTGGGTGTTGAAGTGCAGCGCAGATTCGGCAAGGTGATCCTCGAGCTAGG
CGGCAATAATGCCCTAATCATCGATGAATCTGCCAACGTGAAGATGGCCC
TGGACGCCGCACTTTTCGGCTGCATTGGCACCAGTGGTCAAAGATGCACC
ACCACCAGGAGGATTATTGTCCACGAAAAGCTGCACGATCAGTTCGTAAA
GGAGCTGGTTGGTAAATATAAGCAGCTAATTTCCAAGATTGGACACCAGC
TCGAAGCTCAAACTCTGGTGGGTCCCGTGCACACGCAACAAAACGTGGAG
AACTACAAGGCGGCCATCGCGGAAGCGAAATCCTTAGGAGGAACGGTGGC
CTTCGGAGGTAATGTCATCCAGCGGGATGGTTTTTACGTAGAGCCCACAG
TGATCACTGGATTGCCGCACGATGCCAGCGTTGTCCATCGCGAAACCTTT
GCACCAATTGTGTACATCCTCAAAGCCAAAAACGTGGACCAGGCCATCGA
ATGGAACAATGAGGTGGAACAGGGCTTATCCTCTGCCATTTTCACGGAGA
ACATCGGGCAGGCGTTCAAGTGGATTGGAGCCAAGGGTTCCGATTGCGGT
ATAGTTAACATCAACACCACCACCAACGGCGCCGAGATTGGTGGAGCTTT
CGGAGGCGAAAAAGCCACTGGAGGAGGTCGCGAGTCCGGATCCGATGCCT
GGAAGCAGTATTGCAAGCGGGCCACCATTACAGTCAATCACTCCGGAGAA
TTGGCCTGCGCCCAGGGTGTTGTCTTCAATGTGGAGTAGAAGCTTTCTAG
ACCAT
BS07106.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9629-RA | 1623 | CG9629-PA | 1..1623 | 17..1639 | 8115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9629-RA | 2053 | CG9629-RA | 65..1691 | 15..1641 | 8135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19266835..19268460 | 1641..16 | 8130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:57:38 has no hits.
BS07106.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:52 Download gff for
BS07106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 1..1623 | 17..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:24 Download gff for
BS07106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 61..1687 | 15..1641 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:23 Download gff for
BS07106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 72..1689 | 22..1639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:52 Download gff for
BS07106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 61..1687 | 15..1641 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:09 Download gff for
BS07106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 72..1689 | 22..1639 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:09 Download gff for
BS07106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19266837..19268454 | 22..1639 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:23 Download gff for
BS07106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19259937..19261554 | 22..1639 | 100 | | Minus |
BS07106.pep Sequence
Translation from 16 to 1638
> BS07106.pep
MLAQLRNISKLALPRRLVTQTASYSSSSSYLIDQPEYSFLKELGLERDNP
GVYSGQWQGRGPSVTSYDPGTGQPIAKVRQGNVQELEHTIGLAVEAYKQW
RQVPAPVRGEIVRQIGDELRKYKEPLGKLVSLEVGKIYSEGQGEVQEFID
ICDYAVGLSRIYSGQLINSERADHSILEAWRPLGVVGVISAYNFPNAVFG
WNAAIALTTGNSVLWKGAPSTPLVSVATTKIVAEVLRRNNLPPVVTLCQG
GTDVGQTLVADKRVNLVSFTGSCQTGRDVGVEVQRRFGKVILELGGNNAL
IIDESANVKMALDAALFGCIGTSGQRCTTTRRIIVHEKLHDQFVKELVGK
YKQLISKIGHQLEAQTLVGPVHTQQNVENYKAAIAEAKSLGGTVAFGGNV
IQRDGFYVEPTVITGLPHDASVVHRETFAPIVYILKAKNVDQAIEWNNEV
EQGLSSAIFTENIGQAFKWIGAKGSDCGIVNINTTTNGAEIGGAFGGEKA
TGGGRESGSDAWKQYCKRATITVNHSGELACAQGVVFNVE*
BS07106.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9629-PA | 540 | CG9629-PA | 1..540 | 1..540 | 2786 | 100 | Plus |
| Ssadh-PE | 509 | CG4685-PE | 51..495 | 68..515 | 478 | 26.8 | Plus |
| Ssadh-PD | 509 | CG4685-PD | 51..495 | 68..515 | 478 | 26.8 | Plus |
| Ssadh-PC | 509 | CG4685-PC | 51..495 | 68..515 | 478 | 26.8 | Plus |
| Ssadh-PB | 509 | CG4685-PB | 51..495 | 68..515 | 478 | 26.8 | Plus |
