Clone BS07109 Report

Search the DGRC for BS07109

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG10139-RA
Protein status:BS07109.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07109.3prime Sequence

705 bp (681 high quality bases) assembled on 2006-01-06

> BS07109.3prime
ATGGTCTAGAAAGCTTTTAATTATAAGTGGGAGCCCGATCGATGGACGCT
GCCTCCAATATCACCTTCATTATCTTGTCCTTGGCAAACTCGGAGGCGTC
GGTGTTCAACTGTCGTAGCCGGTCGGCCACAAAGTCTCCGAAGATCTGGG
AGCTGTCCTTCTGGGTGCGCAGAGCATTGGCCACTGCCTTGTTGACCATT
TCCTCGTCCATAATGCTGATGGTGGACATCTCGCCCTCGCCTTCAACGTC
GTCCTCTAGCCTTTGCTCGCCGCCGCCGGTCAGGGAGCACGATGAGAACA
TGACCTGCTCTGGTTCGTAAAGTGCCAGGTTCTCAATGATTTCCTCGTAG
TCGACGGACTGATCCGATGCACTGATTTTTTCCTTTTTTACCGGGGAAGT
TTTTGGCTGCGACTTCACCTTGACCTTGTAGGGAGTGGTGCTGGAGCTGC
TGGCGGATGACCTGTTTAAGGGGCTGTCGTCTGTGGCTTTGATTTGCTGT
TTAAGGTTTAAGTGCTTCATATGCTTCTTGGTCGACGCATGTGCACGCAG
ATCGCTTATTTTGGTGTTTACGCATCATTTGCAGAAGCGGCAGTGCGCCC
GGTAGGAGTCGTCCGGATCACGCCGCAGCCACGCACGAAACTCCTCCATT
TGCAGCCACACATCGCGCAGTTTCTGCTTGTAAATTTTCATGTCCACTGA
TAACT

BS07109.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10139-PA 675 CG10139-RA 1..675 691..17 3325 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10139-RA 825 CG10139-RA 87..763 691..15 3355 99.7 Minus
CG10139-RB 954 CG10139-RB 41..699 673..15 3265 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14645614..14646089 490..15 2365 99.8 Minus
2R 25286936 2R 14645356..14645556 691..491 990 99.5 Minus
Blast to na_te.dros performed 2015-02-03 12:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 845..947 429..327 119 57.3 Minus

BS07109.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:22 Download gff for BS07109.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-PA 1..675 17..691 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:45 Download gff for BS07109.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-PA 1..675 17..691 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:48:38 Download gff for BS07109.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 87..769 6..691 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:40:11 Download gff for BS07109.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 87..769 6..691 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:40:11 Download gff for BS07109.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14645356..14645556 491..691 99 -> Minus
2R 14645614..14646095 6..490 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:48:38 Download gff for BS07109.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10532861..10533061 491..691 99 -> Minus
arm_2R 10533119..10533600 6..490 98   Minus

BS07109.5prime Sequence

706 bp (566 high quality bases) assembled on 2006-01-06

> BS07109.5prime
GAAGTTATCAGTCGACATGAAAATTTACAAGCAGAAACTGCGCGATGTGT
GGCTGCAAATGGAGGAGTTTCGTGCGTGGCTGCGGCGTGATCCGGACGAC
TCCTACCGGGCGCACTGCCGCTTCTGCAAATGCTGCGTAAACACCAAAAT
AAGCGATCTGCGTGCACATGCGTCGACCAAGAAGCATATGAAGCACTTAA
ACCTTAAACAGCAAATCAAAACCACAGACGACAGCCCCTTAAACAGGTCA
TCCGCCAGCAGCTCCAGCACCACTCCCTACAAGGTCAAGGTGAAGTCGCA
GCCAAAAACTTCCCCGGTAAAAAAGGAAAAAATCAGTGCATCGGATCAGT
CCGTCGACTACGAGGAAATCATTGAGAACCTGGCACTTTACGAACCAGAG
CAGGTCATGTTCTCATCGTGCTCCCTGACCGGCGGCGGCGAGCAAAGGCT
AGAGGACGACGTTGAAGGCGAGGGCGAGATGTCCACCATCAGCATTATGG
ACGAGGAAATGGTCAACAAGGCAGTGGCCAATGCTCTGCGCACCCAGAAG
GACAGCTCCCAGATCTTCAGAGACTTTGTGGCCGACCGGCTACGACAGTT
GAACACCGACGCCTCCGAGTTTGCCAAGGACAAGATAATGAAGGTGATAT
TGGAGGCAGCGTCCATCGATCGGGCTCCCACTTATAATTAAAAGCTTTCT
AGACCA

BS07109.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10139-PA 675 CG10139-RA 1..675 17..691 3350 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10139-RA 825 CG10139-RA 87..763 17..693 3370 99.9 Plus
CG10139-RB 954 CG10139-RB 41..699 35..693 3280 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14645614..14646089 218..693 2365 99.8 Plus
2R 25286936 2R 14645356..14645556 17..217 1005 100 Plus
Blast to na_te.dros performed 2015-02-10 04:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 845..947 279..381 119 57.3 Plus

BS07109.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:23 Download gff for BS07109.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-PA 1..675 17..691 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:46 Download gff for BS07109.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-PA 1..675 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:49 Download gff for BS07109.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 79..769 11..702 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:44 Download gff for BS07109.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 79..769 11..702 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:44 Download gff for BS07109.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14645348..14645556 11..217 98 -> Plus
2R 14645614..14646095 218..702 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:49 Download gff for BS07109.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10532853..10533061 11..217 98 -> Plus
arm_2R 10533119..10533600 218..702 98   Plus

BS07109.complete Sequence

707 bp (707 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635731

> BS07109.complete
GAAGTTATCAGTCGACATGAAAATTTACAAGCAGAAACTGCGCGATGTGT
GGCTGCAAATGGAGGAGTTTCGTGCGTGGCTGCGGCGTGATCCGGACGAC
TCCTACCGGGCGCACTGCCGCTTCTGCAAATGCTGCGTAAACACCAAAAT
AAGCGATCTGCGTGCACATGCGTCGACCAAGAAGCATATGAAGCACTTAA
ACCTTAAACAGCAAATCAAAACCACAGACGACAGCCCCTTAAACAGGTCA
TCCGCCAGCAGCTCCAGCACCACTCCCTACAAGGTCAAGGTGAAGTCGCA
GCCAAAAACTTCCCCGGTAAAAAAGGAAAAAATCAGTGCATCGGATCAGT
CCGTCGACTACGAGGAAATCATTGAGAACCTGGCACTTTACGAACCAGAG
CAGGTCATGTTCTCATCGTGCTCCCTGACCGGCGGCGGCGAGCAAAGGCT
AGAGGACGACGTTGAAGGCGAGGGCGAGATGTCCACCATCAGCATTATGG
ACGAGGAAATGGTCAACAAGGCAGTGGCCAATGCTCTGCGCACCCAGAAG
GACAGCTCCCAGATCTTCGGAGACTTTGTGGCCGACCGGCTACGACAGTT
GAACACCGACGCCTCCGAGTTTGCCAAGGACAAGATAATGAAGGTGATAT
TGGAGGCAGCGTCCATCGATCGGGCTCCCACTTATAATTAAAAGCTTTCT
AGACCAT

BS07109.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10139-RA 675 CG10139-PA 1..675 17..691 3375 100 Plus
CG10139-RB 633 CG10139-PB 1..633 59..691 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10139-RA 825 CG10139-RA 87..763 17..693 3385 100 Plus
CG10139-RB 954 CG10139-RB 41..699 35..693 3295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14645614..14646089 218..693 2380 100 Plus
2R 25286936 2R 14645356..14645556 17..217 1005 100 Plus
Blast to na_te.dros performed 2014-11-27 23:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 845..947 279..381 119 57.3 Plus

BS07109.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:46 Download gff for BS07109.complete
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 1..675 17..691 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:25 Download gff for BS07109.complete
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 78..768 11..702 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:15 Download gff for BS07109.complete
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 87..759 17..689 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:46 Download gff for BS07109.complete
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 78..768 11..702 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:00 Download gff for BS07109.complete
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 87..759 17..689 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:00 Download gff for BS07109.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14645356..14645556 17..217 100 -> Plus
2R 14645614..14646085 218..689 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:15 Download gff for BS07109.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10532861..10533061 17..217 100 -> Plus
arm_2R 10533119..10533590 218..689 100   Plus

BS07109.pep Sequence

Translation from 16 to 690

> BS07109.pep
MKIYKQKLRDVWLQMEEFRAWLRRDPDDSYRAHCRFCKCCVNTKISDLRA
HASTKKHMKHLNLKQQIKTTDDSPLNRSSASSSSTTPYKVKVKSQPKTSP
VKKEKISASDQSVDYEEIIENLALYEPEQVMFSSCSLTGGGEQRLEDDVE
GEGEMSTISIMDEEMVNKAVANALRTQKDSSQIFGDFVADRLRQLNTDAS
EFAKDKIMKVILEAASIDRAPTYN*

BS07109.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10139-PA 224 CG10139-PA 1..224 1..224 1149 100 Plus
CG10139-PB 210 CG10139-PB 1..210 15..224 1074 100 Plus
l(2)05714-PC 260 CG8886-PC 15..244 2..213 150 22.6 Plus
l(2)05714-PA 260 CG8886-PA 15..244 2..213 150 22.6 Plus
l(2)05714-PB 271 CG8886-PB 15..255 2..213 145 21.8 Plus