Clone Sequence Records
BS07109.3prime Sequence
705 bp (681 high quality bases) assembled on 2006-01-06
> BS07109.3prime
ATGGTCTAGAAAGCTTTTAATTATAAGTGGGAGCCCGATCGATGGACGCT
GCCTCCAATATCACCTTCATTATCTTGTCCTTGGCAAACTCGGAGGCGTC
GGTGTTCAACTGTCGTAGCCGGTCGGCCACAAAGTCTCCGAAGATCTGGG
AGCTGTCCTTCTGGGTGCGCAGAGCATTGGCCACTGCCTTGTTGACCATT
TCCTCGTCCATAATGCTGATGGTGGACATCTCGCCCTCGCCTTCAACGTC
GTCCTCTAGCCTTTGCTCGCCGCCGCCGGTCAGGGAGCACGATGAGAACA
TGACCTGCTCTGGTTCGTAAAGTGCCAGGTTCTCAATGATTTCCTCGTAG
TCGACGGACTGATCCGATGCACTGATTTTTTCCTTTTTTACCGGGGAAGT
TTTTGGCTGCGACTTCACCTTGACCTTGTAGGGAGTGGTGCTGGAGCTGC
TGGCGGATGACCTGTTTAAGGGGCTGTCGTCTGTGGCTTTGATTTGCTGT
TTAAGGTTTAAGTGCTTCATATGCTTCTTGGTCGACGCATGTGCACGCAG
ATCGCTTATTTTGGTGTTTACGCATCATTTGCAGAAGCGGCAGTGCGCCC
GGTAGGAGTCGTCCGGATCACGCCGCAGCCACGCACGAAACTCCTCCATT
TGCAGCCACACATCGCGCAGTTTCTGCTTGTAAATTTTCATGTCCACTGA
TAACT
BS07109.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10139-PA | 675 | CG10139-RA | 1..675 | 691..17 | 3325 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10139-RA | 825 | CG10139-RA | 87..763 | 691..15 | 3355 | 99.7 | Minus |
CG10139-RB | 954 | CG10139-RB | 41..699 | 673..15 | 3265 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:18:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14645614..14646089 | 490..15 | 2365 | 99.8 | Minus |
2R | 25286936 | 2R | 14645356..14645556 | 691..491 | 990 | 99.5 | Minus |
Blast to na_te.dros performed 2015-02-03 12:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G6 | 2042 | G6 G6_DM 2042bp | 845..947 | 429..327 | 119 | 57.3 | Minus |
BS07109.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:22 Download gff for
BS07109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-PA | 1..675 | 17..691 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:45 Download gff for
BS07109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-PA | 1..675 | 17..691 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:48:38 Download gff for
BS07109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 87..769 | 6..691 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:40:11 Download gff for
BS07109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 87..769 | 6..691 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:40:11 Download gff for
BS07109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14645356..14645556 | 491..691 | 99 | -> | Minus |
2R | 14645614..14646095 | 6..490 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:48:38 Download gff for
BS07109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10532861..10533061 | 491..691 | 99 | -> | Minus |
arm_2R | 10533119..10533600 | 6..490 | 98 | | Minus |
BS07109.5prime Sequence
706 bp (566 high quality bases) assembled on 2006-01-06
> BS07109.5prime
GAAGTTATCAGTCGACATGAAAATTTACAAGCAGAAACTGCGCGATGTGT
GGCTGCAAATGGAGGAGTTTCGTGCGTGGCTGCGGCGTGATCCGGACGAC
TCCTACCGGGCGCACTGCCGCTTCTGCAAATGCTGCGTAAACACCAAAAT
AAGCGATCTGCGTGCACATGCGTCGACCAAGAAGCATATGAAGCACTTAA
ACCTTAAACAGCAAATCAAAACCACAGACGACAGCCCCTTAAACAGGTCA
TCCGCCAGCAGCTCCAGCACCACTCCCTACAAGGTCAAGGTGAAGTCGCA
GCCAAAAACTTCCCCGGTAAAAAAGGAAAAAATCAGTGCATCGGATCAGT
CCGTCGACTACGAGGAAATCATTGAGAACCTGGCACTTTACGAACCAGAG
CAGGTCATGTTCTCATCGTGCTCCCTGACCGGCGGCGGCGAGCAAAGGCT
AGAGGACGACGTTGAAGGCGAGGGCGAGATGTCCACCATCAGCATTATGG
ACGAGGAAATGGTCAACAAGGCAGTGGCCAATGCTCTGCGCACCCAGAAG
GACAGCTCCCAGATCTTCAGAGACTTTGTGGCCGACCGGCTACGACAGTT
GAACACCGACGCCTCCGAGTTTGCCAAGGACAAGATAATGAAGGTGATAT
TGGAGGCAGCGTCCATCGATCGGGCTCCCACTTATAATTAAAAGCTTTCT
AGACCA
BS07109.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10139-PA | 675 | CG10139-RA | 1..675 | 17..691 | 3350 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:47:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10139-RA | 825 | CG10139-RA | 87..763 | 17..693 | 3370 | 99.9 | Plus |
CG10139-RB | 954 | CG10139-RB | 41..699 | 35..693 | 3280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14645614..14646089 | 218..693 | 2365 | 99.8 | Plus |
2R | 25286936 | 2R | 14645356..14645556 | 17..217 | 1005 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 04:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G6 | 2042 | G6 G6_DM 2042bp | 845..947 | 279..381 | 119 | 57.3 | Plus |
BS07109.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:23 Download gff for
BS07109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-PA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:46 Download gff for
BS07109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-PA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:49 Download gff for
BS07109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 79..769 | 11..702 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:44 Download gff for
BS07109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 79..769 | 11..702 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:44 Download gff for
BS07109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14645348..14645556 | 11..217 | 98 | -> | Plus |
2R | 14645614..14646095 | 218..702 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:49 Download gff for
BS07109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10532853..10533061 | 11..217 | 98 | -> | Plus |
arm_2R | 10533119..10533600 | 218..702 | 98 | | Plus |
BS07109.complete Sequence
707 bp (707 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635731
> BS07109.complete
GAAGTTATCAGTCGACATGAAAATTTACAAGCAGAAACTGCGCGATGTGT
GGCTGCAAATGGAGGAGTTTCGTGCGTGGCTGCGGCGTGATCCGGACGAC
TCCTACCGGGCGCACTGCCGCTTCTGCAAATGCTGCGTAAACACCAAAAT
AAGCGATCTGCGTGCACATGCGTCGACCAAGAAGCATATGAAGCACTTAA
ACCTTAAACAGCAAATCAAAACCACAGACGACAGCCCCTTAAACAGGTCA
TCCGCCAGCAGCTCCAGCACCACTCCCTACAAGGTCAAGGTGAAGTCGCA
GCCAAAAACTTCCCCGGTAAAAAAGGAAAAAATCAGTGCATCGGATCAGT
CCGTCGACTACGAGGAAATCATTGAGAACCTGGCACTTTACGAACCAGAG
CAGGTCATGTTCTCATCGTGCTCCCTGACCGGCGGCGGCGAGCAAAGGCT
AGAGGACGACGTTGAAGGCGAGGGCGAGATGTCCACCATCAGCATTATGG
ACGAGGAAATGGTCAACAAGGCAGTGGCCAATGCTCTGCGCACCCAGAAG
GACAGCTCCCAGATCTTCGGAGACTTTGTGGCCGACCGGCTACGACAGTT
GAACACCGACGCCTCCGAGTTTGCCAAGGACAAGATAATGAAGGTGATAT
TGGAGGCAGCGTCCATCGATCGGGCTCCCACTTATAATTAAAAGCTTTCT
AGACCAT
BS07109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10139-RA | 675 | CG10139-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
CG10139-RB | 633 | CG10139-PB | 1..633 | 59..691 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10139-RA | 825 | CG10139-RA | 87..763 | 17..693 | 3385 | 100 | Plus |
CG10139-RB | 954 | CG10139-RB | 41..699 | 35..693 | 3295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14645614..14646089 | 218..693 | 2380 | 100 | Plus |
2R | 25286936 | 2R | 14645356..14645556 | 17..217 | 1005 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G6 | 2042 | G6 G6_DM 2042bp | 845..947 | 279..381 | 119 | 57.3 | Plus |
BS07109.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:58:46 Download gff for
BS07109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:35:25 Download gff for
BS07109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 78..768 | 11..702 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:15 Download gff for
BS07109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 87..759 | 17..689 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:58:46 Download gff for
BS07109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 78..768 | 11..702 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:00 Download gff for
BS07109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 87..759 | 17..689 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:00 Download gff for
BS07109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14645356..14645556 | 17..217 | 100 | -> | Plus |
2R | 14645614..14646085 | 218..689 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:15 Download gff for
BS07109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10532861..10533061 | 17..217 | 100 | -> | Plus |
arm_2R | 10533119..10533590 | 218..689 | 100 | | Plus |
BS07109.pep Sequence
Translation from 16 to 690
> BS07109.pep
MKIYKQKLRDVWLQMEEFRAWLRRDPDDSYRAHCRFCKCCVNTKISDLRA
HASTKKHMKHLNLKQQIKTTDDSPLNRSSASSSSTTPYKVKVKSQPKTSP
VKKEKISASDQSVDYEEIIENLALYEPEQVMFSSCSLTGGGEQRLEDDVE
GEGEMSTISIMDEEMVNKAVANALRTQKDSSQIFGDFVADRLRQLNTDAS
EFAKDKIMKVILEAASIDRAPTYN*
BS07109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10139-PA | 224 | CG10139-PA | 1..224 | 1..224 | 1149 | 100 | Plus |
CG10139-PB | 210 | CG10139-PB | 1..210 | 15..224 | 1074 | 100 | Plus |
l(2)05714-PC | 260 | CG8886-PC | 15..244 | 2..213 | 150 | 22.6 | Plus |
l(2)05714-PA | 260 | CG8886-PA | 15..244 | 2..213 | 150 | 22.6 | Plus |
l(2)05714-PB | 271 | CG8886-PB | 15..255 | 2..213 | 145 | 21.8 | Plus |