Clone Sequence Records
BS07113.3prime Sequence
890 bp (782 high quality bases) assembled on 2006-01-06
> BS07113.3prime
ATGGTCTAGAAAGCTTTCAGAGCGCGAGCAGATCCTCTTCGGCGCCCGGT
TTCTTTGGTGTCTTTCGTAAGCTATCGGCTCCTGCCGATCCTGTCGTGGC
ACTGGCGGCGGAGTTCGATGCACTGATCGTTGGAAGATTCTCGGCGGCAG
CGGCTCTCTCCTCTAGGAATTTGTCAAACTCCGAGCTGGTCAGCTCCTCA
ATTCCCTCGATGTGTGAGCTGCCCAACCACGCCTCCATCTCGTCGATCTC
ATTCTCTTTCGTCGATTTACTTACCACCGGCGGTTCGCCGGCTGAGCGCT
GTGCCTGCTGCGGTTGATTTGGTTTGTAAGGCGAGGCGGTGGCAGTCACA
CTCCCAGCAGCAGCGTCCACCGAGGGAATGTCCCGCAGCAAGTCCGATTT
ATGGTTGCCATCGGTGCGCGACTGTGCCAGCATATCGAATTCATCGGCAG
GTCGTGCGCTCCTCTGCACCCCAATGGGTGCTCCACCACCCAGGCTGATC
TGTCCCAAACTCTGTGGCAGTTGGGCTTCCTCGCTGCTTTCGATTAGATC
GATCAGCAGTTGGTCACTTTGCGGCGTATTGCTCACGGCGGTAGTTGTGG
GCGGAGGTGGTAGCGTAGCCACCGTGGTGGCTCCTGCTCCAGCTGCTCCC
ACACCGGGCAGGCCCATGGCTGCGCCCAGCACAGCCGAGGGCGAGGTAAC
ACCAGCACCCTGGCCCTGCGAACGATTTTTCTCGTAACGCTGGTGGCGCA
AGAACACATTGTTCAGCTCGTCATTGATGCGCAGGAACTCCGCGGTGAGC
TCGTCGTCCTGGACACGTCCAATCAGATCCACGATGCGAGACTGCATCTC
CTTGCAGGTCGAGGTGAGCTCATTGAGCAGGGCATAGTCA
BS07113.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3529-PB | 1632 | CG3529-RB | 759..1632 | 890..17 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3529-RB | 2120 | CG3529-RB | 891..1764 | 890..17 | 4370 | 100 | Minus |
CG3529-RD | 2111 | CG3529-RD | 891..1755 | 890..17 | 4225 | 99 | Minus |
CG3529-RC | 2069 | CG3529-RC | 891..1515 | 890..266 | 3125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9449140..9449628 | 890..402 | 2445 | 100 | Minus |
3L | 28110227 | 3L | 9450232..9450429 | 214..17 | 990 | 100 | Minus |
3L | 28110227 | 3L | 9449689..9449824 | 401..266 | 680 | 100 | Minus |
3L | 28110227 | 3L | 9450018..9450068 | 265..215 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:34:03 has no hits.
BS07113.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:30 Download gff for
BS07113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-PB | 760..1632 | 17..889 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:54 Download gff for
BS07113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-PB | 760..1632 | 17..889 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:10 Download gff for
BS07113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 892..1772 | 9..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:12:07 Download gff for
BS07113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 892..1772 | 9..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:12:07 Download gff for
BS07113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9449141..9449628 | 402..889 | 100 | -> | Minus |
3L | 9449689..9449824 | 266..401 | 100 | -> | Minus |
3L | 9450018..9450068 | 215..265 | 100 | -> | Minus |
3L | 9450232..9450437 | 9..214 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:10 Download gff for
BS07113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9442241..9442728 | 402..889 | 100 | -> | Minus |
arm_3L | 9442789..9442924 | 266..401 | 100 | -> | Minus |
arm_3L | 9443118..9443168 | 215..265 | 100 | -> | Minus |
arm_3L | 9443332..9443537 | 9..214 | 98 | | Minus |
BS07113.5prime Sequence
915 bp (811 high quality bases) assembled on 2006-01-06
> BS07113.5prime
GAAGTTATCAGTCGACATGGCTTCATTTTTCAACGTTGGCGCCTTGGGAA
ATGTTTTCTCCACTCCAGTTGGCCAGCGCATAGAGGCCGCCACCGATGCC
AACCTGGCCTCGGAGAACTGGGCCGCCAACATGGAGATCTGCGACATGAT
CAACGAATCCTCCGACACTGCACGCGATGCTATGCGTGCCATTCGCAAAC
GCCTCTCCCAGAACGCCGGCAAAAACAACCAGGTGGTGATGTACACGCTG
ACCGTCCTGGAGACATGCGTGAAGAACTGCGGCAAGGCCTTCCATGTCCT
GGTGGCCCAGAAGGACTTCATCAACGAGCTGGTCAAGCTGATTGGGCCCA
AGAACGATCCACCAGCCGCCATGCAGGAGAAGGTTCTCAGTCTGATACAA
ATCTGGGCGGATGCGTTTAAGAACCAACCGGATCTCAACGGCGTCACCCA
GATGTACATGGAATTGAAAAACAAGGGCATCGAGTTTCCAGCCAACGATC
TGGATGCCATGGCACCCATTTACACGCCACAGAGGAGTGTTCCCGAGATG
CCCCCTCAGCTGGTGGCCGCTCAGCAGCACACAATCTCGCCTCAACACAT
GGCTGCCGCTGCTGCCGCCGCAGCTGCAGCCGCAGCTCCACCCAGCACAG
GTCCTTTGCATTTGACTCCCGAGCAAGCGGCTAAGCTGCGCTCCGAACTG
GAGATCGTTAGCAACAATATGTCCATCCTCAGCGAGATGCTCAGTGTTCT
GAAGCCCGGCCAGGAGTCGCCCGATGACTATGCCCTGCTCAATGAGCTCA
CCTCGACCTGCAAGGAGATGCAGTCTCGCATCGTGGATCTGATTGGACGT
GTCCAGGACGACGAGCTCACCGCGGAGTTCCTGCGCATCAATGACGAGCT
GAACAATGTGTTTCT
BS07113.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3529-PB | 1632 | CG3529-RB | 1..896 | 17..912 | 4480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3529-RD | 2111 | CG3529-RD | 133..1028 | 17..912 | 4480 | 100 | Plus |
CG3529-RC | 2069 | CG3529-RC | 133..1028 | 17..912 | 4480 | 100 | Plus |
CG3529-RB | 2120 | CG3529-RB | 133..1028 | 17..912 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9448386..9448839 | 82..535 | 2270 | 100 | Plus |
3L | 28110227 | 3L | 9448900..9449277 | 535..912 | 1890 | 100 | Plus |
3L | 28110227 | 3L | 9446996..9447062 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:26:55 has no hits.
BS07113.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:31 Download gff for
BS07113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-PB | 1..898 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:56 Download gff for
BS07113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-PB | 1..898 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:28:26 Download gff for
BS07113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 125..1030 | 8..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:00:47 Download gff for
BS07113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 125..1030 | 8..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:00:47 Download gff for
BS07113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9448388..9448839 | 84..535 | 100 | -> | Plus |
3L | 9446988..9447062 | 8..83 | 94 | -> | Plus |
3L | 9448901..9449279 | 536..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:28:26 Download gff for
BS07113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9440088..9440162 | 8..83 | 94 | -> | Plus |
arm_3L | 9441488..9441939 | 84..535 | 100 | -> | Plus |
arm_3L | 9442001..9442379 | 536..915 | 99 | | Plus |
BS07113.complete Sequence
1664 bp (1664 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635733
> BS07113.complete
GAAGTTATCAGTCGACATGGCTTCATTTTTCAACGTTGGCGCCTTGGGAA
ATGTTTTCTCCACTCCAGTTGGCCAGCGCATAGAGGCCGCCACCGATGCC
AACCTGGCCTCGGAGAACTGGGCCGCCAACATGGAGATCTGCGACATGAT
CAACGAATCCTCCGACACTGCACGCGATGCTATGCGTGCCATTCGCAAAC
GCCTCTCCCAGAACGCCGGCAAAAACAACCAGGTGGTGATGTACACGCTG
ACCGTCCTGGAGACATGCGTGAAGAACTGCGGCAAGGCCTTCCATGTCCT
GGTGGCCCAGAAGGACTTCATCAACGAGCTGGTCAAGCTGATTGGGCCCA
AGAACGATCCACCAGCCGCCATGCAGGAGAAGGTTCTCAGTCTGATACAA
ATCTGGGCGGATGCGTTTAAGAACCAACCGGATCTCAACGGCGTCACCCA
GATGTACATGGAATTGAAAAACAAGGGCATCGAGTTTCCAGCCAACGATC
TGGATGCCATGGCACCCATTTACACGCCACAGAGGAGTGTTCCCGAGATG
CCCCCTCAGCTGGTGGCCGCTCAGCAGCACACAATCTCGCCTCAACACAT
GGCTGCCGCTGCTGCCGCCGCAGCTGCAGCCGCAGCTCCACCCAGCACAG
GTCCTTTGCATTTGACTCCCGAGCAAGCGGCTAAGCTGCGCTCCGAACTG
GAGATCGTTAGCAACAATATGTCCATCCTCAGCGAGATGCTCAGTGTTCT
GAAGCCCGGCCAGGAGTCGCCCGATGACTATGCCCTGCTCAATGAGCTCA
CCTCGACCTGCAAGGAGATGCAGTCTCGCATCGTGGATCTGATTGGACGT
GTCCAGGACGACGAGCTCACCGCGGAGTTCCTGCGCATCAATGACGAGCT
GAACAATGTGTTCTTGCGCCACCAGCGTTACGAGAAAAATCGTTCGCAGG
GCCAGGGTGCTGGTGTTACCTCGCCCTCGGCTGTGCTGGGCGCAGCCATG
GGCCTGCCCGGTGTGGGAGCAGCTGGAGCAGGAGCCACCACGGTGGCTAC
GCTACCACCTCCGCCCACAACTACCGCCGTGAGCAATACGCCGCAAAGTG
ACCAACTGCTGATCGATCTAATCGAAAGCAGCGAGGAAGCCCAACTGCCA
CAGAGTTTGGGACAGATCAGCCTGGGTGGTGGAGCACCCATTGGGGTGCA
GAGGAGCGCACGACCTGCCGATGAATTCGATATGCTGGCACAGTCGCGCA
CCGATGGCAACCATAAATCGGACTTGCTGCGGGACATTCCCTCGGTGGAC
GCTGCTGCTGGGAGTGTGACTGCCACCGCCTCGCCTTACAAACCAAATCA
ACCGCAGCAGGCACAGCGCTCAGCCGGCGAACCGCCGGTGGTAAGTAAAT
CGACGAAAGAGAATGAGATCGACGAGATGGAGGCGTGGTTGGGCAGCTCA
CACATCGAGGGAATTGAGGAGCTGACCAGCTCGGAGTTTGACAAATTCCT
AGAGGAGAGAGCCGCTGCCGCCGAGAATCTTCCAACGATCAGTGCATCGA
ACTCCGCCGCCAGTGCCACGACAGGATCGGCAGGAGCCGATAGCTTACGA
AAGACACCAAAGAAACCGGGCGCCGAAGAGGATCTGCTCGCGCTCTGAAA
GCTTTCTAGACCAT
BS07113.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3529-RB | 1632 | CG3529-PB | 1..1632 | 17..1648 | 8160 | 100 | Plus |
CG3529-RD | 1623 | CG3529-PD | 1..1623 | 17..1648 | 7990 | 99.4 | Plus |
CG3529-RC | 1581 | CG3529-PC | 1..1383 | 17..1399 | 6915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3529-RB | 2120 | CG3529-RB | 133..1764 | 17..1648 | 8160 | 100 | Plus |
CG3529-RD | 2111 | CG3529-RD | 133..1755 | 17..1648 | 7990 | 99.4 | Plus |
CG3529-RC | 2069 | CG3529-RC | 133..1515 | 17..1399 | 6915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9448900..9449628 | 535..1263 | 3645 | 100 | Plus |
3L | 28110227 | 3L | 9448386..9448839 | 82..535 | 2270 | 100 | Plus |
3L | 28110227 | 3L | 9450232..9450429 | 1451..1648 | 990 | 100 | Plus |
3L | 28110227 | 3L | 9449689..9449824 | 1264..1399 | 680 | 100 | Plus |
3L | 28110227 | 3L | 9446996..9447062 | 17..83 | 335 | 100 | Plus |
3L | 28110227 | 3L | 9450018..9450068 | 1400..1450 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:26:57 has no hits.
BS07113.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:55 Download gff for
BS07113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 1..1632 | 17..1648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:27 Download gff for
BS07113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 114..1761 | 8..1656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:48 Download gff for
BS07113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 133..1763 | 17..1647 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:55 Download gff for
BS07113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 114..1761 | 8..1656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:39 Download gff for
BS07113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 133..1763 | 17..1647 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:39 Download gff for
BS07113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9446996..9447062 | 17..83 | 100 | -> | Plus |
3L | 9448388..9448839 | 84..535 | 100 | -> | Plus |
3L | 9448901..9449628 | 536..1263 | 100 | -> | Plus |
3L | 9449689..9449824 | 1264..1399 | 100 | -> | Plus |
3L | 9450018..9450068 | 1400..1450 | 100 | -> | Plus |
3L | 9450232..9450428 | 1451..1647 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:48 Download gff for
BS07113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9440096..9440162 | 17..83 | 100 | -> | Plus |
arm_3L | 9441488..9441939 | 84..535 | 100 | -> | Plus |
arm_3L | 9442001..9442728 | 536..1263 | 100 | -> | Plus |
arm_3L | 9442789..9442924 | 1264..1399 | 100 | -> | Plus |
arm_3L | 9443118..9443168 | 1400..1450 | 100 | -> | Plus |
arm_3L | 9443332..9443528 | 1451..1647 | 100 | | Plus |
BS07113.pep Sequence
Translation from 16 to 1647
> BS07113.pep
MASFFNVGALGNVFSTPVGQRIEAATDANLASENWAANMEICDMINESSD
TARDAMRAIRKRLSQNAGKNNQVVMYTLTVLETCVKNCGKAFHVLVAQKD
FINELVKLIGPKNDPPAAMQEKVLSLIQIWADAFKNQPDLNGVTQMYMEL
KNKGIEFPANDLDAMAPIYTPQRSVPEMPPQLVAAQQHTISPQHMAAAAA
AAAAAAAPPSTGPLHLTPEQAAKLRSELEIVSNNMSILSEMLSVLKPGQE
SPDDYALLNELTSTCKEMQSRIVDLIGRVQDDELTAEFLRINDELNNVFL
RHQRYEKNRSQGQGAGVTSPSAVLGAAMGLPGVGAAGAGATTVATLPPPP
TTTAVSNTPQSDQLLIDLIESSEEAQLPQSLGQISLGGGAPIGVQRSARP
ADEFDMLAQSRTDGNHKSDLLRDIPSVDAAAGSVTATASPYKPNQPQQAQ
RSAGEPPVVSKSTKENEIDEMEAWLGSSHIEGIEELTSSEFDKFLEERAA
AAENLPTISASNSAASATTGSAGADSLRKTPKKPGAEEDLLAL*
BS07113.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3529-PB | 543 | CG3529-PB | 1..543 | 1..543 | 2735 | 100 | Plus |
CG3529-PD | 540 | CG3529-PD | 1..540 | 1..543 | 2708 | 99.4 | Plus |
CG3529-PC | 526 | CG3529-PC | 1..526 | 1..543 | 2619 | 96.9 | Plus |
Stam-PA | 689 | CG6521-PA | 7..173 | 15..187 | 200 | 27 | Plus |
Hrs-PC | 760 | CG2903-PC | 1..149 | 13..165 | 177 | 30.5 | Plus |