Clone BS07113 Report

Search the DGRC for BS07113

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG3529-RB
Protein status:BS07113.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07113.3prime Sequence

890 bp (782 high quality bases) assembled on 2006-01-06

> BS07113.3prime
ATGGTCTAGAAAGCTTTCAGAGCGCGAGCAGATCCTCTTCGGCGCCCGGT
TTCTTTGGTGTCTTTCGTAAGCTATCGGCTCCTGCCGATCCTGTCGTGGC
ACTGGCGGCGGAGTTCGATGCACTGATCGTTGGAAGATTCTCGGCGGCAG
CGGCTCTCTCCTCTAGGAATTTGTCAAACTCCGAGCTGGTCAGCTCCTCA
ATTCCCTCGATGTGTGAGCTGCCCAACCACGCCTCCATCTCGTCGATCTC
ATTCTCTTTCGTCGATTTACTTACCACCGGCGGTTCGCCGGCTGAGCGCT
GTGCCTGCTGCGGTTGATTTGGTTTGTAAGGCGAGGCGGTGGCAGTCACA
CTCCCAGCAGCAGCGTCCACCGAGGGAATGTCCCGCAGCAAGTCCGATTT
ATGGTTGCCATCGGTGCGCGACTGTGCCAGCATATCGAATTCATCGGCAG
GTCGTGCGCTCCTCTGCACCCCAATGGGTGCTCCACCACCCAGGCTGATC
TGTCCCAAACTCTGTGGCAGTTGGGCTTCCTCGCTGCTTTCGATTAGATC
GATCAGCAGTTGGTCACTTTGCGGCGTATTGCTCACGGCGGTAGTTGTGG
GCGGAGGTGGTAGCGTAGCCACCGTGGTGGCTCCTGCTCCAGCTGCTCCC
ACACCGGGCAGGCCCATGGCTGCGCCCAGCACAGCCGAGGGCGAGGTAAC
ACCAGCACCCTGGCCCTGCGAACGATTTTTCTCGTAACGCTGGTGGCGCA
AGAACACATTGTTCAGCTCGTCATTGATGCGCAGGAACTCCGCGGTGAGC
TCGTCGTCCTGGACACGTCCAATCAGATCCACGATGCGAGACTGCATCTC
CTTGCAGGTCGAGGTGAGCTCATTGAGCAGGGCATAGTCA

BS07113.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-PB 1632 CG3529-RB 759..1632 890..17 4370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-RB 2120 CG3529-RB 891..1764 890..17 4370 100 Minus
CG3529-RD 2111 CG3529-RD 891..1755 890..17 4225 99 Minus
CG3529-RC 2069 CG3529-RC 891..1515 890..266 3125 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9449140..9449628 890..402 2445 100 Minus
3L 28110227 3L 9450232..9450429 214..17 990 100 Minus
3L 28110227 3L 9449689..9449824 401..266 680 100 Minus
3L 28110227 3L 9450018..9450068 265..215 255 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:34:03 has no hits.

BS07113.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:30 Download gff for BS07113.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-PB 760..1632 17..889 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:54 Download gff for BS07113.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-PB 760..1632 17..889 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:10 Download gff for BS07113.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 892..1772 9..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:12:07 Download gff for BS07113.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 892..1772 9..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:12:07 Download gff for BS07113.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9449141..9449628 402..889 100 -> Minus
3L 9449689..9449824 266..401 100 -> Minus
3L 9450018..9450068 215..265 100 -> Minus
3L 9450232..9450437 9..214 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:10 Download gff for BS07113.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9442241..9442728 402..889 100 -> Minus
arm_3L 9442789..9442924 266..401 100 -> Minus
arm_3L 9443118..9443168 215..265 100 -> Minus
arm_3L 9443332..9443537 9..214 98   Minus

BS07113.5prime Sequence

915 bp (811 high quality bases) assembled on 2006-01-06

> BS07113.5prime
GAAGTTATCAGTCGACATGGCTTCATTTTTCAACGTTGGCGCCTTGGGAA
ATGTTTTCTCCACTCCAGTTGGCCAGCGCATAGAGGCCGCCACCGATGCC
AACCTGGCCTCGGAGAACTGGGCCGCCAACATGGAGATCTGCGACATGAT
CAACGAATCCTCCGACACTGCACGCGATGCTATGCGTGCCATTCGCAAAC
GCCTCTCCCAGAACGCCGGCAAAAACAACCAGGTGGTGATGTACACGCTG
ACCGTCCTGGAGACATGCGTGAAGAACTGCGGCAAGGCCTTCCATGTCCT
GGTGGCCCAGAAGGACTTCATCAACGAGCTGGTCAAGCTGATTGGGCCCA
AGAACGATCCACCAGCCGCCATGCAGGAGAAGGTTCTCAGTCTGATACAA
ATCTGGGCGGATGCGTTTAAGAACCAACCGGATCTCAACGGCGTCACCCA
GATGTACATGGAATTGAAAAACAAGGGCATCGAGTTTCCAGCCAACGATC
TGGATGCCATGGCACCCATTTACACGCCACAGAGGAGTGTTCCCGAGATG
CCCCCTCAGCTGGTGGCCGCTCAGCAGCACACAATCTCGCCTCAACACAT
GGCTGCCGCTGCTGCCGCCGCAGCTGCAGCCGCAGCTCCACCCAGCACAG
GTCCTTTGCATTTGACTCCCGAGCAAGCGGCTAAGCTGCGCTCCGAACTG
GAGATCGTTAGCAACAATATGTCCATCCTCAGCGAGATGCTCAGTGTTCT
GAAGCCCGGCCAGGAGTCGCCCGATGACTATGCCCTGCTCAATGAGCTCA
CCTCGACCTGCAAGGAGATGCAGTCTCGCATCGTGGATCTGATTGGACGT
GTCCAGGACGACGAGCTCACCGCGGAGTTCCTGCGCATCAATGACGAGCT
GAACAATGTGTTTCT

BS07113.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-PB 1632 CG3529-RB 1..896 17..912 4480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-RD 2111 CG3529-RD 133..1028 17..912 4480 100 Plus
CG3529-RC 2069 CG3529-RC 133..1028 17..912 4480 100 Plus
CG3529-RB 2120 CG3529-RB 133..1028 17..912 4480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9448386..9448839 82..535 2270 100 Plus
3L 28110227 3L 9448900..9449277 535..912 1890 100 Plus
3L 28110227 3L 9446996..9447062 17..83 335 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:26:55 has no hits.

BS07113.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:31 Download gff for BS07113.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-PB 1..898 17..915 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:56 Download gff for BS07113.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-PB 1..898 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:28:26 Download gff for BS07113.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 125..1030 8..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:00:47 Download gff for BS07113.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 125..1030 8..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:00:47 Download gff for BS07113.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9448388..9448839 84..535 100 -> Plus
3L 9446988..9447062 8..83 94 -> Plus
3L 9448901..9449279 536..915 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:28:26 Download gff for BS07113.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9440088..9440162 8..83 94 -> Plus
arm_3L 9441488..9441939 84..535 100 -> Plus
arm_3L 9442001..9442379 536..915 99   Plus

BS07113.complete Sequence

1664 bp (1664 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635733

> BS07113.complete
GAAGTTATCAGTCGACATGGCTTCATTTTTCAACGTTGGCGCCTTGGGAA
ATGTTTTCTCCACTCCAGTTGGCCAGCGCATAGAGGCCGCCACCGATGCC
AACCTGGCCTCGGAGAACTGGGCCGCCAACATGGAGATCTGCGACATGAT
CAACGAATCCTCCGACACTGCACGCGATGCTATGCGTGCCATTCGCAAAC
GCCTCTCCCAGAACGCCGGCAAAAACAACCAGGTGGTGATGTACACGCTG
ACCGTCCTGGAGACATGCGTGAAGAACTGCGGCAAGGCCTTCCATGTCCT
GGTGGCCCAGAAGGACTTCATCAACGAGCTGGTCAAGCTGATTGGGCCCA
AGAACGATCCACCAGCCGCCATGCAGGAGAAGGTTCTCAGTCTGATACAA
ATCTGGGCGGATGCGTTTAAGAACCAACCGGATCTCAACGGCGTCACCCA
GATGTACATGGAATTGAAAAACAAGGGCATCGAGTTTCCAGCCAACGATC
TGGATGCCATGGCACCCATTTACACGCCACAGAGGAGTGTTCCCGAGATG
CCCCCTCAGCTGGTGGCCGCTCAGCAGCACACAATCTCGCCTCAACACAT
GGCTGCCGCTGCTGCCGCCGCAGCTGCAGCCGCAGCTCCACCCAGCACAG
GTCCTTTGCATTTGACTCCCGAGCAAGCGGCTAAGCTGCGCTCCGAACTG
GAGATCGTTAGCAACAATATGTCCATCCTCAGCGAGATGCTCAGTGTTCT
GAAGCCCGGCCAGGAGTCGCCCGATGACTATGCCCTGCTCAATGAGCTCA
CCTCGACCTGCAAGGAGATGCAGTCTCGCATCGTGGATCTGATTGGACGT
GTCCAGGACGACGAGCTCACCGCGGAGTTCCTGCGCATCAATGACGAGCT
GAACAATGTGTTCTTGCGCCACCAGCGTTACGAGAAAAATCGTTCGCAGG
GCCAGGGTGCTGGTGTTACCTCGCCCTCGGCTGTGCTGGGCGCAGCCATG
GGCCTGCCCGGTGTGGGAGCAGCTGGAGCAGGAGCCACCACGGTGGCTAC
GCTACCACCTCCGCCCACAACTACCGCCGTGAGCAATACGCCGCAAAGTG
ACCAACTGCTGATCGATCTAATCGAAAGCAGCGAGGAAGCCCAACTGCCA
CAGAGTTTGGGACAGATCAGCCTGGGTGGTGGAGCACCCATTGGGGTGCA
GAGGAGCGCACGACCTGCCGATGAATTCGATATGCTGGCACAGTCGCGCA
CCGATGGCAACCATAAATCGGACTTGCTGCGGGACATTCCCTCGGTGGAC
GCTGCTGCTGGGAGTGTGACTGCCACCGCCTCGCCTTACAAACCAAATCA
ACCGCAGCAGGCACAGCGCTCAGCCGGCGAACCGCCGGTGGTAAGTAAAT
CGACGAAAGAGAATGAGATCGACGAGATGGAGGCGTGGTTGGGCAGCTCA
CACATCGAGGGAATTGAGGAGCTGACCAGCTCGGAGTTTGACAAATTCCT
AGAGGAGAGAGCCGCTGCCGCCGAGAATCTTCCAACGATCAGTGCATCGA
ACTCCGCCGCCAGTGCCACGACAGGATCGGCAGGAGCCGATAGCTTACGA
AAGACACCAAAGAAACCGGGCGCCGAAGAGGATCTGCTCGCGCTCTGAAA
GCTTTCTAGACCAT

BS07113.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-RB 1632 CG3529-PB 1..1632 17..1648 8160 100 Plus
CG3529-RD 1623 CG3529-PD 1..1623 17..1648 7990 99.4 Plus
CG3529-RC 1581 CG3529-PC 1..1383 17..1399 6915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-RB 2120 CG3529-RB 133..1764 17..1648 8160 100 Plus
CG3529-RD 2111 CG3529-RD 133..1755 17..1648 7990 99.4 Plus
CG3529-RC 2069 CG3529-RC 133..1515 17..1399 6915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9448900..9449628 535..1263 3645 100 Plus
3L 28110227 3L 9448386..9448839 82..535 2270 100 Plus
3L 28110227 3L 9450232..9450429 1451..1648 990 100 Plus
3L 28110227 3L 9449689..9449824 1264..1399 680 100 Plus
3L 28110227 3L 9446996..9447062 17..83 335 100 Plus
3L 28110227 3L 9450018..9450068 1400..1450 255 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:26:57 has no hits.

BS07113.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:55 Download gff for BS07113.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 1..1632 17..1648 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:27 Download gff for BS07113.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 114..1761 8..1656 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:48 Download gff for BS07113.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 133..1763 17..1647 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:55 Download gff for BS07113.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 114..1761 8..1656 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:39 Download gff for BS07113.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 133..1763 17..1647 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:39 Download gff for BS07113.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9446996..9447062 17..83 100 -> Plus
3L 9448388..9448839 84..535 100 -> Plus
3L 9448901..9449628 536..1263 100 -> Plus
3L 9449689..9449824 1264..1399 100 -> Plus
3L 9450018..9450068 1400..1450 100 -> Plus
3L 9450232..9450428 1451..1647 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:48 Download gff for BS07113.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9440096..9440162 17..83 100 -> Plus
arm_3L 9441488..9441939 84..535 100 -> Plus
arm_3L 9442001..9442728 536..1263 100 -> Plus
arm_3L 9442789..9442924 1264..1399 100 -> Plus
arm_3L 9443118..9443168 1400..1450 100 -> Plus
arm_3L 9443332..9443528 1451..1647 100   Plus

BS07113.pep Sequence

Translation from 16 to 1647

> BS07113.pep
MASFFNVGALGNVFSTPVGQRIEAATDANLASENWAANMEICDMINESSD
TARDAMRAIRKRLSQNAGKNNQVVMYTLTVLETCVKNCGKAFHVLVAQKD
FINELVKLIGPKNDPPAAMQEKVLSLIQIWADAFKNQPDLNGVTQMYMEL
KNKGIEFPANDLDAMAPIYTPQRSVPEMPPQLVAAQQHTISPQHMAAAAA
AAAAAAAPPSTGPLHLTPEQAAKLRSELEIVSNNMSILSEMLSVLKPGQE
SPDDYALLNELTSTCKEMQSRIVDLIGRVQDDELTAEFLRINDELNNVFL
RHQRYEKNRSQGQGAGVTSPSAVLGAAMGLPGVGAAGAGATTVATLPPPP
TTTAVSNTPQSDQLLIDLIESSEEAQLPQSLGQISLGGGAPIGVQRSARP
ADEFDMLAQSRTDGNHKSDLLRDIPSVDAAAGSVTATASPYKPNQPQQAQ
RSAGEPPVVSKSTKENEIDEMEAWLGSSHIEGIEELTSSEFDKFLEERAA
AAENLPTISASNSAASATTGSAGADSLRKTPKKPGAEEDLLAL*

BS07113.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-PB 543 CG3529-PB 1..543 1..543 2735 100 Plus
CG3529-PD 540 CG3529-PD 1..540 1..543 2708 99.4 Plus
CG3529-PC 526 CG3529-PC 1..526 1..543 2619 96.9 Plus
Stam-PA 689 CG6521-PA 7..173 15..187 200 27 Plus
Hrs-PC 760 CG2903-PC 1..149 13..165 177 30.5 Plus