Clone Sequence Records
BS07114.3prime Sequence
798 bp (797 high quality bases) assembled on 2006-01-06
> BS07114.3prime
ATGGTCTAGAAAGCTTCTAAGATTGGTTTTTCTGTATAATCCAATCGACA
GCCTCTGCAAAGTTTTCCAACAACGCTGTTGGAGGTGGGGATGGTTTGAC
ATCCGGCAGATATTTGCCGGTCTTGACCAGAATTCCCTGCATGCCCATGC
TCATGGCGCCCACTATGTCATCATTGGCATCATCTCCAATCATAACGCAT
GAGGCTGGATCCCGACCAGCCAGAGCTCCTTCGAAGAAATAAGGATTGGG
CTTGCCAATCACTTTGGCAGTTCGTCCTGTAGCGAACTCCAAACCCTTGA
CAAAGCACCCTGGGCCCAAGGCTAGGCCTTCTGCTCGTTTGTAGTACTTA
CCCTGATGCACGGCGATCAGTTTGTGATTCTTGTTTTCCAATAGAACGTT
AAAAGCCTCATTCAGCTGTTCATAGTTAAAGGCCTTGGGTGCCAGACCGA
TTACAACTGAATCCTTATAGCGCCTAGTGTCCTCCGGCGGAAAGTCCTGT
CGTGCATCCTCAGACAGAATATAGTACGGATTTAGTCTCTCATTTTCCAC
ATACGAGACTGCGGCACTCAAGGAGCTGTAGATCTCAGAGGCGTCAAGTT
GGAAGCCAATCCTGCATAGCCGTTCGTGAAGAGTGGCCTTTGAATCCTTC
GTGGTGTTTGTAACGAATTTCACCAGTACGCCAGAGTCACGCAATCTTTT
TAACGCCTCGACAGCATTCGGAGTAGGTTCATCCTCCACATGCAAGGTGC
CACTGAGATCAATGAGTGCTCCTTTAATAGACATGTCGACTGATAACT
BS07114.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17294-PA | 768 | CG17294-RA | 1..768 | 784..17 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17294-RA | 1012 | CG17294-RA | 50..817 | 784..17 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8377223..8377521 | 697..399 | 1495 | 100 | Minus |
2L | 23513712 | 2L | 8377577..8377794 | 398..181 | 1090 | 100 | Minus |
2L | 23513712 | 2L | 8377847..8378011 | 181..17 | 825 | 100 | Minus |
2L | 23513712 | 2L | 8377084..8377172 | 784..696 | 445 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 19:54:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 4019..4114 | 727..635 | 132 | 63.3 | Minus |
BS07114.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:32 Download gff for
BS07114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17294-PA | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:58 Download gff for
BS07114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17294-PA | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:02:23 Download gff for
BS07114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17294-RA | 44..822 | 10..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:12:20 Download gff for
BS07114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17294-RA | 44..822 | 10..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:12:20 Download gff for
BS07114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8377078..8377172 | 696..791 | 95 | -> | Minus |
2L | 8377225..8377521 | 399..695 | 100 | -> | Minus |
2L | 8377577..8377793 | 182..398 | 100 | -> | Minus |
2L | 8377847..8378016 | 10..181 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:02:23 Download gff for
BS07114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8377078..8377172 | 696..791 | 95 | -> | Minus |
arm_2L | 8377225..8377521 | 399..695 | 100 | -> | Minus |
arm_2L | 8377577..8377793 | 182..398 | 100 | -> | Minus |
arm_2L | 8377847..8378016 | 10..181 | 98 | | Minus |
BS07114.5prime Sequence
798 bp (797 high quality bases) assembled on 2006-01-06
> BS07114.5prime
GAAGTTATCAGTCGACATGTCTATTAAAGGAGCACTCATTGATCTCAGTG
GCACCTTGCATGTGGAGGATGAACCTACTCCGAATGCTGTCGAGGCGTTA
AAAAGATTGCGTGACTCTGGCGTACTGGTGAAATTCGTTACAAACACCAC
GAAGGATTCAAAGGCCACTCTTCACGAACGGCTATGCAGGATTGGCTTCC
AACTTGACGCCTCTGAGATCTACAGCTCCTTGAGTGCCGCAGTCTCGTAT
GTGGAAAATGAGAGACTAAATCCGTACTATATTCTGTCTGAGGATGCACG
ACAGGACTTTCCGCCGGAGGACACTAGGCGCTATAAGGATTCAGTTGTAA
TCGGTCTGGCACCCAAGGCCTTTAACTATGAACAGCTGAATGAGGCTTTT
AACGTTCTATTGGAAAACAAGAATCACAAACTGATCGCCGTGCATCAGGG
TAAGTACTACAAACGAGCAGAAGGCCTAGCCTTGGGCCCAGGGTGCTTTG
TCAAGGGTTTGGAGTTCGCTACAGGACGAACTGCCAAAGTGATTGGCAAG
CCCAATCCTTATTTCTTCGAAGGAGCTCTGGCTGGTCGGGATCCAGCCTC
ATGCGTTATGATTGGAGATGATGCCAATGATGACATAGTGGGCGCCATGA
GCATGGGCATGCAGGGAATTCTGGTCAAGACCGGCAAATATCTGCCGGAT
GTCAAACCATCCCCACCTCCAACAGCGTTGTTGGAAAACTTTGCAGAGGC
TGTCGATTGGATTATACAGAAAAACCAATCTTAGAAGCTTTCTAGACC
BS07114.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17294-PA | 768 | CG17294-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17294-RA | 1012 | CG17294-RA | 50..817 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8377223..8377521 | 104..402 | 1495 | 100 | Plus |
2L | 23513712 | 2L | 8377577..8377794 | 403..620 | 1090 | 100 | Plus |
2L | 23513712 | 2L | 8377847..8378011 | 620..784 | 825 | 100 | Plus |
2L | 23513712 | 2L | 8377084..8377172 | 17..105 | 445 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 19:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 4019..4114 | 74..166 | 132 | 63.3 | Plus |
BS07114.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:33 Download gff for
BS07114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17294-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:48:59 Download gff for
BS07114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17294-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:30 Download gff for
BS07114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17294-RA | 44..822 | 10..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:04 Download gff for
BS07114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17294-RA | 44..822 | 10..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:04 Download gff for
BS07114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8377078..8377172 | 10..105 | 95 | -> | Plus |
2L | 8377225..8377521 | 106..402 | 100 | -> | Plus |
2L | 8377577..8377793 | 403..619 | 100 | -> | Plus |
2L | 8377847..8378016 | 620..791 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:30 Download gff for
BS07114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8377078..8377172 | 10..105 | 95 | -> | Plus |
arm_2L | 8377225..8377521 | 106..402 | 100 | -> | Plus |
arm_2L | 8377577..8377793 | 403..619 | 100 | -> | Plus |
arm_2L | 8377847..8378016 | 620..791 | 98 | | Plus |
BS07114.complete Sequence
800 bp (800 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635734
> BS07114.complete
GAAGTTATCAGTCGACATGTCTATTAAAGGAGCACTCATTGATCTCAGTG
GCACCTTGCATGTGGAGGATGAACCTACTCCGAATGCTGTCGAGGCGTTA
AAAAGATTGCGTGACTCTGGCGTACTGGTGAAATTCGTTACAAACACCAC
GAAGGATTCAAAGGCCACTCTTCACGAACGGCTATGCAGGATTGGCTTCC
AACTTGACGCCTCTGAGATCTACAGCTCCTTGAGTGCCGCAGTCTCGTAT
GTGGAAAATGAGAGACTAAATCCGTACTATATTCTGTCTGAGGATGCACG
ACAGGACTTTCCGCCGGAGGACACTAGGCGCTATAAGGATTCAGTTGTAA
TCGGTCTGGCACCCAAGGCCTTTAACTATGAACAGCTGAATGAGGCTTTT
AACGTTCTATTGGAAAACAAGAATCACAAACTGATCGCCGTGCATCAGGG
TAAGTACTACAAACGAGCAGAAGGCCTAGCCTTGGGCCCAGGGTGCTTTG
TCAAGGGTTTGGAGTTCGCTACAGGACGAACTGCCAAAGTGATTGGCAAG
CCCAATCCTTATTTCTTCGAAGGAGCTCTGGCTGGTCGGGATCCAGCCTC
ATGCGTTATGATTGGAGATGATGCCAATGATGACATAGTGGGCGCCATGA
GCATGGGCATGCAGGGAATTCTGGTCAAGACCGGCAAATATCTGCCGGAT
GTCAAACCATCCCCACCTCCAACAGCGTTGTTGGAAAACTTTGCAGAGGC
TGTCGATTGGATTATACAGAAAAACCAATCTTAGAAGCTTTCTAGACCAT
BS07114.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17294-RA | 768 | CG17294-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17294-RA | 1012 | CG17294-RA | 50..817 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8377223..8377521 | 104..402 | 1495 | 100 | Plus |
2L | 23513712 | 2L | 8377577..8377794 | 403..620 | 1090 | 100 | Plus |
2L | 23513712 | 2L | 8377847..8378011 | 620..784 | 825 | 100 | Plus |
2L | 23513712 | 2L | 8377084..8377172 | 17..105 | 445 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 4019..4114 | 74..166 | 132 | 63.3 | Plus |
BS07114.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:55 Download gff for
BS07114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17294-RA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:07 Download gff for
BS07114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17294-RA | 28..806 | 10..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:59 Download gff for
BS07114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17294-RA | 50..817 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:56 Download gff for
BS07114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17294-RA | 28..806 | 10..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:34 Download gff for
BS07114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17294-RA | 50..817 | 17..784 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:34 Download gff for
BS07114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8377084..8377172 | 17..105 | 100 | -> | Plus |
2L | 8377225..8377521 | 106..402 | 100 | -> | Plus |
2L | 8377577..8377793 | 403..619 | 100 | -> | Plus |
2L | 8377847..8378011 | 620..784 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:59 Download gff for
BS07114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8377084..8377172 | 17..105 | 100 | -> | Plus |
arm_2L | 8377225..8377521 | 106..402 | 100 | -> | Plus |
arm_2L | 8377577..8377793 | 403..619 | 100 | -> | Plus |
arm_2L | 8377847..8378011 | 620..784 | 100 | | Plus |
BS07114.pep Sequence
Translation from 16 to 783
> BS07114.pep
MSIKGALIDLSGTLHVEDEPTPNAVEALKRLRDSGVLVKFVTNTTKDSKA
TLHERLCRIGFQLDASEIYSSLSAAVSYVENERLNPYYILSEDARQDFPP
EDTRRYKDSVVIGLAPKAFNYEQLNEAFNVLLENKNHKLIAVHQGKYYKR
AEGLALGPGCFVKGLEFATGRTAKVIGKPNPYFFEGALAGRDPASCVMIG
DDANDDIVGAMSMGMQGILVKTGKYLPDVKPSPPPTALLENFAEAVDWII
QKNQS*
BS07114.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17294-PA | 255 | CG17294-PA | 1..255 | 1..255 | 1318 | 100 | Plus |
CG5577-PB | 315 | CG5577-PB | 23..292 | 2..230 | 163 | 27.3 | Plus |
CG5577-PA | 315 | CG5577-PA | 23..292 | 2..230 | 163 | 27.3 | Plus |