Clone Sequence Records
BS07116.3prime Sequence
924 bp (899 high quality bases) assembled on 2006-01-06
> BS07116.3prime
ATGGTCTAGAAAGCTTTCATGAAGCGCTGTTCGTCTCACCGTTGCTGTCG
TGGAAGTTGGTGCCATTGACGATGAAGGAGGTACCCAGGCCGTACAGGTG
TCCGGAGTACTTCGCATGGTCGATGTTGTCCTCGAAGAACATCTCACGCA
TTTTGAAGAAGGCCATGCCCGTCAGCAGAGCATCCGAGCCGGCCTGATGC
TGGGGGCCCACGCGCCGCAGTTCCAGCTGATCGGCAACCTCCTGCAGGCC
GCCTTTCAGGTTCTTGCACGACTTCATCAGATACTTGATGTCGAAGATGT
TGGGAAAGTAGATGTGCAGCAGATCGAAAAATTCAGATTCGTCCGGGGGC
AGGTTCTGATCGGTGAGCAGCTTTAGAAGGTAGCCAAAATCGTAGCCGGA
GTGGAAGCACAGCCACTTGATGTTTTCCACCAGCACGATGCCAGAGCTCA
TCAGCAGTTCGGCGAAGTCGATGGGATCGATGCCATCCTCCTCGTGCTTC
TTGAACTGAATTCCGGAGTTCTGCAGCAGATCGATCGAGTCCTGCGCATA
CATGTCCTCGCTCAGGTTAAACTTGAAGTTGAACTGCCAGGTGGAGTAGC
CGGGTGGTGTCTTTCCATCGTCGTCCATGAAGGTAAGGCCCAATTGGATA
ATCCGCAGCAGATCGACATTACAGCGCAGCAGCTGGTAATGATAGTCCGC
CGTGGAGCGGAACTCGCCGACTGGACGTGCTACCACGCCTGGAAACTCGG
TGTCCATGGCCACATAGTGGTACTTCTGCACCACTTTCCGTATGGTGCGG
AACTCCTCCTCCAGGTTTTGCTTCCACACATCGCGGATGCCGCACTCCTC
GTTGCTGGGTATGTGGGCATGTGGCGCGCCACTGATGGGCGAGGGCATTG
TCCATTTCATGTCGACTGAATACT
BS07116.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5684-PA | 894 | CG5684-RA | 1..894 | 910..17 | 4445 | 99.8 | Minus |
CG5684-PC | 882 | CG5684-RC | 1..882 | 898..17 | 4385 | 99.8 | Minus |
CG5684-PB | 882 | CG5684-RB | 1..882 | 898..17 | 4385 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RA | 1688 | CG5684-RA | 322..1215 | 910..17 | 4455 | 99.9 | Minus |
Pop2-RB | 1893 | CG5684-RB | 536..1420 | 901..17 | 4410 | 99.9 | Minus |
Pop2-RC | 1827 | CG5684-RC | 470..1354 | 901..17 | 4410 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:16:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12000273..12000692 | 143..562 | 2100 | 100 | Plus |
3L | 28110227 | 3L | 12000750..12001091 | 561..902 | 1695 | 99.7 | Plus |
3L | 28110227 | 3L | 11998871..11998998 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:16:35 has no hits.
BS07116.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:36 Download gff for
BS07116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PA | 1..894 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:03 Download gff for
BS07116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PA | 1..894 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:48:16 Download gff for
BS07116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 322..1215 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:39:56 Download gff for
BS07116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 322..1215 | 17..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:39:56 Download gff for
BS07116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11998871..11998996 | 17..142 | 100 | <- | Plus |
3L | 12000273..12000690 | 143..560 | 100 | <- | Plus |
3L | 12000750..12001091 | 561..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:48:16 Download gff for
BS07116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11993373..11993790 | 143..560 | 100 | <- | Plus |
arm_3L | 11991971..11992096 | 17..142 | 100 | <- | Plus |
arm_3L | 11993850..11994191 | 561..902 | 99 | | Plus |
BS07116.5prime Sequence
924 bp (834 high quality bases) assembled on 2006-01-06
> BS07116.5prime
GAAGTTATCAGTCGACATGAAATGGACAATGCCCTCGGCCATCAGTGGCG
CGCCACATGCCCACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTG
TGGAAGCAAAACCTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCA
GAAGTACCACTATGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCAC
GTCCAGTCGGCGAGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTG
CGCTGTAATGTCGATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCAT
GGACGACGATGGAAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACT
TCAAGTTTAACCTGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTG
CTGCAGAACTCCGGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGA
TCCCATCGACTTCGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGG
AAAACATCAAGTGGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTT
CTAAAGCTGCTCACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTT
CGATCTGCTGCACATCTACTTTCCCAACATCTTCGACATCAAGTATCTGA
TGAAGTCGTGCAAGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAG
CTGGAACTGCGGCGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCT
GCTGACGGGCATGGCCTTCTTCAAAATGCGTGAGATGTTCTTCGAGGACA
ACATCGACCATGCGAAGTACTCCGGACACCTGTACGGCCTGNGTACCTCC
TTCATCGTCAATGGCACCAACTTCCACGACAGCAACGGTGAGACGAACAG
CGCTTCATGAAAGCTTTCTAGACC
BS07116.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5684-PA | 894 | CG5684-RA | 1..894 | 17..910 | 4451 | 99.8 | Plus |
CG5684-PC | 882 | CG5684-RC | 1..882 | 29..910 | 4391 | 99.8 | Plus |
CG5684-PB | 882 | CG5684-RB | 1..882 | 29..910 | 4391 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RA | 1688 | CG5684-RA | 322..1215 | 17..910 | 4459 | 99.9 | Plus |
Pop2-RB | 1893 | CG5684-RB | 536..1420 | 26..910 | 4414 | 99.9 | Plus |
Pop2-RC | 1827 | CG5684-RC | 470..1354 | 26..910 | 4414 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12000273..12000692 | 784..365 | 2100 | 100 | Minus |
3L | 28110227 | 3L | 12000750..12001091 | 366..25 | 1710 | 100 | Minus |
3L | 28110227 | 3L | 11998871..11998998 | 910..783 | 629 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:03:41 has no hits.
BS07116.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:37 Download gff for
BS07116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:04 Download gff for
BS07116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:17 Download gff for
BS07116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 322..1215 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:30 Download gff for
BS07116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 322..1215 | 17..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:30 Download gff for
BS07116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12000750..12001090 | 22..366 | 98 | <- | Minus |
3L | 11998871..11998996 | 785..910 | 99 | <- | Minus |
3L | 12000273..12000690 | 367..784 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:17 Download gff for
BS07116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11993373..11993790 | 367..784 | 100 | <- | Minus |
arm_3L | 11991971..11992096 | 785..910 | 99 | <- | Minus |
arm_3L | 11993850..11994190 | 22..366 | 98 | <- | Minus |
BS07116.complete Sequence
926 bp (926 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635735
> BS07116.complete
GAAGTTATCAGTCGACATGAAATGGACAATGCCCTCGGCCATCAGTGGCG
CGCCACATGCCCACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTG
TGGAAGCAAAACCTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCA
GAAGTACCACTATGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCAC
GTCCAGTCGGCGAGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTG
CGCTGTAATGTCGATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCAT
GGACGACGATGGAAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACT
TCAAGTTTAACCTGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTG
CTGCAGAACTCCGGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGA
TCCCATCGACTTCGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGG
AAAACATCAAGTGGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTT
CTAAAGCTGCTCACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTT
CGATCTGCTGCACATCTACTTTCCCAACATCTTCGACATCAAGTATCTGA
TGAAGTCGTGCAAGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAG
CTGGAACTGCGGCGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCT
GCTGACGGGCATGGCCTTCTTCAAAATGCGTGAGATGTTCTTCGAGGACA
ACATCGACCATGCGAAGTACTCCGGACACCTGTACGGCCTGGGTACCTCC
TTCATCGTCAATGGCACCAACTTCCACGACAGCAACGGTGAGACGAACAG
CGCTTCATGAAAGCTTTCTAGACCAT
BS07116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RA | 894 | CG5684-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
Pop2-RB | 882 | CG5684-PB | 1..882 | 29..910 | 4410 | 100 | Plus |
Pop2-RC | 882 | CG5684-PC | 1..882 | 29..910 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RA | 1688 | CG5684-RA | 322..1215 | 17..910 | 4470 | 100 | Plus |
Pop2-RB | 1893 | CG5684-RB | 536..1420 | 26..910 | 4425 | 100 | Plus |
Pop2-RC | 1827 | CG5684-RC | 470..1354 | 26..910 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12000273..12000692 | 784..365 | 2100 | 100 | Minus |
3L | 28110227 | 3L | 12000750..12001091 | 366..25 | 1710 | 100 | Minus |
3L | 28110227 | 3L | 11998871..11998998 | 910..783 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:18:38 has no hits.
BS07116.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:56 Download gff for
BS07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:28 Download gff for
BS07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 320..1213 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:16 Download gff for
BS07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 322..1214 | 17..909 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:56 Download gff for
BS07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 320..1213 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:31 Download gff for
BS07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RA | 322..1214 | 17..909 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:31 Download gff for
BS07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11998872..11998996 | 785..909 | 100 | <- | Minus |
3L | 12000273..12000690 | 367..784 | 100 | <- | Minus |
3L | 12000750..12001091 | 25..366 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:16 Download gff for
BS07116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11991972..11992096 | 785..909 | 100 | <- | Minus |
arm_3L | 11993373..11993790 | 367..784 | 100 | <- | Minus |
arm_3L | 11993850..11994191 | 25..366 | 100 | | Minus |
BS07116.pep Sequence
Translation from 16 to 909
> BS07116.pep
MKWTMPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYV
AMDTEFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGK
TPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFA
ELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHI
YFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMA
FFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS*
BS07116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-PA | 297 | CG5684-PA | 1..297 | 1..297 | 1594 | 100 | Plus |
Pop2-PB | 293 | CG5684-PB | 1..293 | 5..297 | 1568 | 100 | Plus |
Pop2-PC | 293 | CG5684-PC | 1..293 | 5..297 | 1568 | 100 | Plus |
Pop2-PE | 361 | CG5684-PE | 1..257 | 1..257 | 1372 | 99.6 | Plus |
Pop2-PD | 357 | CG5684-PD | 1..253 | 5..257 | 1346 | 99.6 | Plus |