Clone BS07116 Report

Search the DGRC for BS07116

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptPop2-RA
Protein status:BS07116.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07116.3prime Sequence

924 bp (899 high quality bases) assembled on 2006-01-06

> BS07116.3prime
ATGGTCTAGAAAGCTTTCATGAAGCGCTGTTCGTCTCACCGTTGCTGTCG
TGGAAGTTGGTGCCATTGACGATGAAGGAGGTACCCAGGCCGTACAGGTG
TCCGGAGTACTTCGCATGGTCGATGTTGTCCTCGAAGAACATCTCACGCA
TTTTGAAGAAGGCCATGCCCGTCAGCAGAGCATCCGAGCCGGCCTGATGC
TGGGGGCCCACGCGCCGCAGTTCCAGCTGATCGGCAACCTCCTGCAGGCC
GCCTTTCAGGTTCTTGCACGACTTCATCAGATACTTGATGTCGAAGATGT
TGGGAAAGTAGATGTGCAGCAGATCGAAAAATTCAGATTCGTCCGGGGGC
AGGTTCTGATCGGTGAGCAGCTTTAGAAGGTAGCCAAAATCGTAGCCGGA
GTGGAAGCACAGCCACTTGATGTTTTCCACCAGCACGATGCCAGAGCTCA
TCAGCAGTTCGGCGAAGTCGATGGGATCGATGCCATCCTCCTCGTGCTTC
TTGAACTGAATTCCGGAGTTCTGCAGCAGATCGATCGAGTCCTGCGCATA
CATGTCCTCGCTCAGGTTAAACTTGAAGTTGAACTGCCAGGTGGAGTAGC
CGGGTGGTGTCTTTCCATCGTCGTCCATGAAGGTAAGGCCCAATTGGATA
ATCCGCAGCAGATCGACATTACAGCGCAGCAGCTGGTAATGATAGTCCGC
CGTGGAGCGGAACTCGCCGACTGGACGTGCTACCACGCCTGGAAACTCGG
TGTCCATGGCCACATAGTGGTACTTCTGCACCACTTTCCGTATGGTGCGG
AACTCCTCCTCCAGGTTTTGCTTCCACACATCGCGGATGCCGCACTCCTC
GTTGCTGGGTATGTGGGCATGTGGCGCGCCACTGATGGGCGAGGGCATTG
TCCATTTCATGTCGACTGAATACT

BS07116.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5684-PA 894 CG5684-RA 1..894 910..17 4445 99.8 Minus
CG5684-PC 882 CG5684-RC 1..882 898..17 4385 99.8 Minus
CG5684-PB 882 CG5684-RB 1..882 898..17 4385 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-RA 1688 CG5684-RA 322..1215 910..17 4455 99.9 Minus
Pop2-RB 1893 CG5684-RB 536..1420 901..17 4410 99.9 Minus
Pop2-RC 1827 CG5684-RC 470..1354 901..17 4410 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12000273..12000692 143..562 2100 100 Plus
3L 28110227 3L 12000750..12001091 561..902 1695 99.7 Plus
3L 28110227 3L 11998871..11998998 17..144 640 100 Plus
Blast to na_te.dros performed on 2015-02-03 12:16:35 has no hits.

BS07116.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:36 Download gff for BS07116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5684-PA 1..894 17..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:03 Download gff for BS07116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5684-PA 1..894 17..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:48:16 Download gff for BS07116.3prime
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 322..1215 17..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:39:56 Download gff for BS07116.3prime
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 322..1215 17..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:39:56 Download gff for BS07116.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11998871..11998996 17..142 100 <- Plus
3L 12000273..12000690 143..560 100 <- Plus
3L 12000750..12001091 561..902 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:48:16 Download gff for BS07116.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11993373..11993790 143..560 100 <- Plus
arm_3L 11991971..11992096 17..142 100 <- Plus
arm_3L 11993850..11994191 561..902 99   Plus

BS07116.5prime Sequence

924 bp (834 high quality bases) assembled on 2006-01-06

> BS07116.5prime
GAAGTTATCAGTCGACATGAAATGGACAATGCCCTCGGCCATCAGTGGCG
CGCCACATGCCCACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTG
TGGAAGCAAAACCTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCA
GAAGTACCACTATGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCAC
GTCCAGTCGGCGAGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTG
CGCTGTAATGTCGATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCAT
GGACGACGATGGAAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACT
TCAAGTTTAACCTGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTG
CTGCAGAACTCCGGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGA
TCCCATCGACTTCGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGG
AAAACATCAAGTGGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTT
CTAAAGCTGCTCACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTT
CGATCTGCTGCACATCTACTTTCCCAACATCTTCGACATCAAGTATCTGA
TGAAGTCGTGCAAGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAG
CTGGAACTGCGGCGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCT
GCTGACGGGCATGGCCTTCTTCAAAATGCGTGAGATGTTCTTCGAGGACA
ACATCGACCATGCGAAGTACTCCGGACACCTGTACGGCCTGNGTACCTCC
TTCATCGTCAATGGCACCAACTTCCACGACAGCAACGGTGAGACGAACAG
CGCTTCATGAAAGCTTTCTAGACC

BS07116.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5684-PA 894 CG5684-RA 1..894 17..910 4451 99.8 Plus
CG5684-PC 882 CG5684-RC 1..882 29..910 4391 99.8 Plus
CG5684-PB 882 CG5684-RB 1..882 29..910 4391 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-RA 1688 CG5684-RA 322..1215 17..910 4459 99.9 Plus
Pop2-RB 1893 CG5684-RB 536..1420 26..910 4414 99.9 Plus
Pop2-RC 1827 CG5684-RC 470..1354 26..910 4414 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12000273..12000692 784..365 2100 100 Minus
3L 28110227 3L 12000750..12001091 366..25 1710 100 Minus
3L 28110227 3L 11998871..11998998 910..783 629 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 19:03:41 has no hits.

BS07116.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:37 Download gff for BS07116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5684-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:04 Download gff for BS07116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5684-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:17 Download gff for BS07116.5prime
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 322..1215 17..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:30 Download gff for BS07116.5prime
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 322..1215 17..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:30 Download gff for BS07116.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12000750..12001090 22..366 98 <- Minus
3L 11998871..11998996 785..910 99 <- Minus
3L 12000273..12000690 367..784 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:17 Download gff for BS07116.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11993373..11993790 367..784 100 <- Minus
arm_3L 11991971..11992096 785..910 99 <- Minus
arm_3L 11993850..11994190 22..366 98 <- Minus

BS07116.complete Sequence

926 bp (926 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635735

> BS07116.complete
GAAGTTATCAGTCGACATGAAATGGACAATGCCCTCGGCCATCAGTGGCG
CGCCACATGCCCACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTG
TGGAAGCAAAACCTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCA
GAAGTACCACTATGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCAC
GTCCAGTCGGCGAGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTG
CGCTGTAATGTCGATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCAT
GGACGACGATGGAAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACT
TCAAGTTTAACCTGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTG
CTGCAGAACTCCGGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGA
TCCCATCGACTTCGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGG
AAAACATCAAGTGGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTT
CTAAAGCTGCTCACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTT
CGATCTGCTGCACATCTACTTTCCCAACATCTTCGACATCAAGTATCTGA
TGAAGTCGTGCAAGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAG
CTGGAACTGCGGCGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCT
GCTGACGGGCATGGCCTTCTTCAAAATGCGTGAGATGTTCTTCGAGGACA
ACATCGACCATGCGAAGTACTCCGGACACCTGTACGGCCTGGGTACCTCC
TTCATCGTCAATGGCACCAACTTCCACGACAGCAACGGTGAGACGAACAG
CGCTTCATGAAAGCTTTCTAGACCAT

BS07116.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-RA 894 CG5684-PA 1..894 17..910 4470 100 Plus
Pop2-RB 882 CG5684-PB 1..882 29..910 4410 100 Plus
Pop2-RC 882 CG5684-PC 1..882 29..910 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-RA 1688 CG5684-RA 322..1215 17..910 4470 100 Plus
Pop2-RB 1893 CG5684-RB 536..1420 26..910 4425 100 Plus
Pop2-RC 1827 CG5684-RC 470..1354 26..910 4425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12000273..12000692 784..365 2100 100 Minus
3L 28110227 3L 12000750..12001091 366..25 1710 100 Minus
3L 28110227 3L 11998871..11998998 910..783 640 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:18:38 has no hits.

BS07116.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:56 Download gff for BS07116.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 1..894 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:28 Download gff for BS07116.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 320..1213 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:16 Download gff for BS07116.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 322..1214 17..909 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:56 Download gff for BS07116.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 320..1213 17..910 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:31 Download gff for BS07116.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RA 322..1214 17..909 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:31 Download gff for BS07116.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11998872..11998996 785..909 100 <- Minus
3L 12000273..12000690 367..784 100 <- Minus
3L 12000750..12001091 25..366 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:16 Download gff for BS07116.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11991972..11992096 785..909 100 <- Minus
arm_3L 11993373..11993790 367..784 100 <- Minus
arm_3L 11993850..11994191 25..366 100   Minus

BS07116.pep Sequence

Translation from 16 to 909

> BS07116.pep
MKWTMPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYV
AMDTEFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGK
TPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFA
ELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHI
YFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMA
FFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS*

BS07116.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-PA 297 CG5684-PA 1..297 1..297 1594 100 Plus
Pop2-PB 293 CG5684-PB 1..293 5..297 1568 100 Plus
Pop2-PC 293 CG5684-PC 1..293 5..297 1568 100 Plus
Pop2-PE 361 CG5684-PE 1..257 1..257 1372 99.6 Plus
Pop2-PD 357 CG5684-PD 1..253 5..257 1346 99.6 Plus