Clone BS07120 Report

Search the DGRC for BS07120

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG8336-RA
Protein status:BS07120.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07120.3prime Sequence

932 bp (792 high quality bases) assembled on 2006-01-06

> BS07120.3prime
ATGGTCTAGAAAGCTTCTAGGCAAAAAGATTTTTAAGGGCATTTCGTTGT
TGTCGGTTGTACTGGGCCAGGAGCTGCTTGGTGCTGTTCAGTTCATTTAG
GATCTGTTTATTCTCCGGCAGGAGATTGTGAGCCGTTTTCAGATCGTTTA
TGGCCTCCTCGTAGTTGCGCAATCCGCGCTGCGCCTGGGCGCGTCGATAG
AAAGCCTTGCTACATTTCGGATCTAGACGAATGGCTTCGTTGCAAACTTC
TCTAGCGCTCGTATAGTTGCCAACTTTTAGGTCCACAGCGGCTGCATTAA
TGTTGTTTACCACGGAGAAGCCGTCGACCTTGAGCAGATCCTCATCTACA
AGGTGTTTTTTGAGAGGATTCAGCTGCTGCCAACCGAACTGTCTGCTCAG
GTAATGATAGTATCGATTCGCCTTGCGATATTTTGCCCGTGCTTCGTGAT
AGCGTCCAAGCTGATAGAAGTGATTGCCCGATTGGCGAATGCCCGTGAGA
AGTTCCACCGCCCCATCTCCTGTGAACTTGTCGAGCTTGCGCGGCCAGTC
TTGGGGATAGGCAGGCAACTTGTCCGTCGTCTCGTCGTTGCACTCGATGC
CCCAGTCCTCGTTGTGAGCTATCTCTCCGCAGTCCCGTATCACGATCGGC
GCCGTGGGATCGCCCTCGTCAGTGCAGTTTTGTTCCATTTCAGCTACGAT
ACCCAGGCCGCGTAAAACACGACCTACGACTACGTTTGTTCCATTCAGAT
TTTCACAGCCCGCGGCGGAAATGAAAAACTGCGAGTTGTTGGAGTTTGGC
TTGCCGTAGTTGGCCATGCTGACCACGCCCTCTTCGTTGTGTGAGAGTTC
GAAGTTCTCGTCATCGAAAACTGGTCCGTAGATGCTCTCGCCGCTGCTTC
CATCGTTTCTTCCCACATCCCCACTCTGGACG

BS07120.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-PB 1152 CG8336-RB 262..1152 907..17 4455 100 Minus
CG8336-PA 1152 CG8336-RA 262..1152 907..17 4455 100 Minus
CG8336-PC 1152 CG8336-RC 262..1152 907..17 4455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-RD 1395 CG8336-RD 381..1296 932..17 4535 99.8 Minus
CG8336-RC 1445 CG8336-RC 431..1346 932..17 4535 99.8 Minus
CG8336-RA 1500 CG8336-RA 486..1401 932..17 4535 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9631193..9631696 520..17 2520 100 Minus
3L 28110227 3L 9630818..9631139 841..520 1610 100 Minus
3L 28110227 3L 9630534..9630624 932..842 395 95.6 Minus
Blast to na_te.dros performed on 2015-02-10 19:00:44 has no hits.

BS07120.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:44 Download gff for BS07120.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-PA 237..1152 17..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:16 Download gff for BS07120.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-PC 237..1152 17..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:09:35 Download gff for BS07120.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 486..1401 17..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:56 Download gff for BS07120.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 486..1401 17..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:56 Download gff for BS07120.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9630534..9630624 842..932 97 -> Minus
3L 9630818..9631138 521..841 100 -> Minus
3L 9631193..9631696 17..520 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:09:35 Download gff for BS07120.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9623634..9623724 842..932 97 -> Minus
arm_3L 9623918..9624238 521..841 100 -> Minus
arm_3L 9624293..9624796 17..520 100   Minus

BS07120.5prime Sequence

875 bp (812 high quality bases) assembled on 2006-01-06

> BS07120.5prime
GAAGTTATCAGTCGACATGGAAGAACGCAAGCTGCTCCGCGCGGTGAAAT
CAACTAATCCACTGGTCTACCTGGACATTTCCATTGGCAAGGAGGATGCG
GGTCGAATGATAATTGAACTGCGCAAGGATGTTGTGCCGAAGACAGCGGA
AAATTTCCGTGCCCTGTGCACGGGCGAATGTGGTATCGGTACTCTGGGCA
AACCGCTCCACTACAAGGGCACAAAGTTCCACAAGATCAAGCGAGTCTTC
GTCGTCCAGAGTGGGGATGTGGTGAAGAACGATGGAAGCAGCGGCGAGAG
CATCTACGGACCAGTTTTCGATGACGAGAACTTCGAACTCTCACACAACG
AAGAGGGCGTGGTCAGCATGGCCAACTACGGCAAGCCAAACTCCAACAAC
TCGCAGTTTTTCATTTCCGCCGCGGGCTGTGAAAATCTGAATGGAACAAA
CGTAGTCGTAGGTCGTGTTTTACGCGGCCTGGGTATCGTAGCTGAAATGG
AACAAAACTGCACTGACGAGGGCGATCCCACGGCGCCGATCGTGATACGG
GACTGCGGAGAGATAGCTCACAACGAGGACTGGGGCATCGAGTGCAACGA
CGAGACGACGGACAAGTTGCCTGCCTATCCCCAAGACTGGCCGCGCAAGC
TCGACAAGTTCACAGGAGATGGGGCGGTGGAACTTCTCACGGGCATTCGC
CAATCGGGCAATCACTTCTATCAGCTTGGACGCTATCACGAAGCACGGGC
AAAATATCGCAAGGCGAATCGATACTATCATTACCTGAGCAGACAGTTCG
GTTGGCAGCAGCTGAATCCTCTCAAAAAACACCTTGTAGATGAGGATCTG
CTCAAGGTCGACGGCTTCTCCGTGG

BS07120.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-PB 1152 CG8336-RB 1..859 17..875 4295 100 Plus
CG8336-PA 1152 CG8336-RA 1..859 17..875 4295 100 Plus
CG8336-PC 1152 CG8336-RC 1..859 17..875 4295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-RD 1395 CG8336-RD 145..1003 17..875 4295 100 Plus
CG8336-RC 1445 CG8336-RC 195..1053 17..875 4295 100 Plus
CG8336-RA 1500 CG8336-RA 250..1108 17..875 4295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9630818..9631139 344..665 1610 100 Plus
3L 28110227 3L 9630379..9630624 98..343 1230 100 Plus
3L 28110227 3L 9631193..9631403 665..875 1055 100 Plus
3L 28110227 3L 9630221..9630302 17..98 410 100 Plus
Blast to na_te.dros performed on 2015-02-04 02:03:50 has no hits.

BS07120.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:45 Download gff for BS07120.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-PA 1..859 17..875 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:18 Download gff for BS07120.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-PC 1..859 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:46:55 Download gff for BS07120.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 250..1108 17..875 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:52 Download gff for BS07120.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 250..1108 17..875 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:52 Download gff for BS07120.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9630818..9631138 344..664 100 -> Plus
3L 9630221..9630302 17..98 100 -> Plus
3L 9630380..9630624 99..343 100 -> Plus
3L 9631193..9631403 665..875 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:46:55 Download gff for BS07120.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9623321..9623402 17..98 100 -> Plus
arm_3L 9623480..9623724 99..343 100 -> Plus
arm_3L 9623918..9624238 344..664 100 -> Plus
arm_3L 9624293..9624503 665..875 100   Plus

BS07120.complete Sequence

1184 bp (1184 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635736

> BS07120.complete
GAAGTTATCAGTCGACATGGAAGAACGCAAGCTGCTCCGCGCGGTGAAAT
CAACTAATCCACTGGTCTACCTGGACATTTCCATTGGCAAGGAGGATGCG
GGTCGAATGATAATTGAACTGCGCAAGGATGTTGTGCCGAAGACAGCGGA
AAATTTCCGTGCCCTGTGCACGGGCGAATGTGGTATCGGTACTCTGGGCA
AACCGCTCCACTACAAGGGCACAAAGTTCCACAAGATCAAGCGAGTCTTC
GTCGTCCAGAGTGGGGATGTGGTGAAGAACGATGGAAGCAGCGGCGAGAG
CATCTACGGACCAGTTTTCGATGACGAGAACTTCGAACTCTCACACAACG
AAGAGGGCGTGGTCAGCATGGCCAACTACGGCAAGCCAAACTCCAACAAC
TCGCAGTTTTTCATTTCCGCCGCGGGCTGTGAAAATCTGAATGGAACAAA
CGTAGTCGTAGGTCGTGTTTTACGCGGCCTGGGTATCGTAGCTGAAATGG
AACAAAACTGCACTGACGAGGGCGATCCCACGGCGCCGATCGTGATACGG
GACTGCGGAGAGATAGCTCACAACGAGGACTGGGGCATCGAGTGCAACGA
CGAGACGACGGACAAGTTGCCTGCCTATCCCCAAGACTGGCCGCGCAAGC
TCGACAAGTTCACAGGAGATGGGGCGGTGGAACTTCTCACGGGCATTCGC
CAATCGGGCAATCACTTCTATCAGCTTGGACGCTATCACGAAGCACGGGC
AAAATATCGCAAGGCGAATCGATACTATCATTACCTGAGCAGACAGTTCG
GTTGGCAGCAGCTGAATCCTCTCAAAAAACACCTTGTAGATGAGGATCTG
CTCAAGGTCGACGGCTTCTCCGTGGTAAACAACATTAATGCAGCCGCTGT
GGACCTAAAAGTTGGCAACTATACGAGCGCTAGAGAAGTTTGCAACGAAG
CCATTCGTCTAGATCCGAAATGTAGCAAGGCTTTCTATCGACGCGCCCAG
GCGCAGCGCGGATTGCGCAACTACGAGGAGGCCATAAACGATCTGAAAAC
GGCTCACAATCTCCTGCCGGAGAATAAACAGATCCTAAATGAACTGAACA
GCACCAAGCAGCTCCTGGCCCAGTACAACCGACAACAACGAAATGCCCTT
AAAAATCTTTTTGCCTAGAAGCTTTCTAGACCAT

BS07120.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-RD 1152 CG8336-PD 1..1152 17..1168 5760 100 Plus
CG8336-RC 1152 CG8336-PC 1..1152 17..1168 5760 100 Plus
CG8336-RA 1152 CG8336-PA 1..1152 17..1168 5760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-RD 1395 CG8336-RD 145..1296 17..1168 5760 100 Plus
CG8336-RC 1445 CG8336-RC 195..1346 17..1168 5760 100 Plus
CG8336-RA 1500 CG8336-RA 250..1401 17..1168 5760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9631193..9631696 665..1168 2520 100 Plus
3L 28110227 3L 9630818..9631139 344..665 1610 100 Plus
3L 28110227 3L 9630379..9630624 98..343 1230 100 Plus
3L 28110227 3L 9630221..9630302 17..98 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:29:21 has no hits.

BS07120.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:57 Download gff for BS07120.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RC 1..1152 17..1168 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:09 Download gff for BS07120.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RC 193..1344 17..1168 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:30 Download gff for BS07120.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 250..1401 17..1168 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:57 Download gff for BS07120.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RC 193..1344 17..1168 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:47 Download gff for BS07120.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 250..1401 17..1168 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:47 Download gff for BS07120.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9630818..9631138 344..664 100 -> Plus
3L 9630221..9630302 17..98 100 -> Plus
3L 9630380..9630624 99..343 100 -> Plus
3L 9631193..9631696 665..1168 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:30 Download gff for BS07120.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9623321..9623402 17..98 100 -> Plus
arm_3L 9623480..9623724 99..343 100 -> Plus
arm_3L 9623918..9624238 344..664 100 -> Plus
arm_3L 9624293..9624796 665..1168 100   Plus

BS07120.pep Sequence

Translation from 16 to 1167

> BS07120.pep
MEERKLLRAVKSTNPLVYLDISIGKEDAGRMIIELRKDVVPKTAENFRAL
CTGECGIGTLGKPLHYKGTKFHKIKRVFVVQSGDVVKNDGSSGESIYGPV
FDDENFELSHNEEGVVSMANYGKPNSNNSQFFISAAGCENLNGTNVVVGR
VLRGLGIVAEMEQNCTDEGDPTAPIVIRDCGEIAHNEDWGIECNDETTDK
LPAYPQDWPRKLDKFTGDGAVELLTGIRQSGNHFYQLGRYHEARAKYRKA
NRYYHYLSRQFGWQQLNPLKKHLVDEDLLKVDGFSVVNNINAAAVDLKVG
NYTSAREVCNEAIRLDPKCSKAFYRRAQAQRGLRNYEEAINDLKTAHNLL
PENKQILNELNSTKQLLAQYNRQQRNALKNLFA*

BS07120.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-PD 383 CG8336-PD 1..383 1..383 2021 100 Plus
CG8336-PC 383 CG8336-PC 1..383 1..383 2021 100 Plus
CG8336-PA 383 CG8336-PA 1..383 1..383 2021 100 Plus
CG8336-PB 383 CG8336-PB 1..383 1..383 2021 100 Plus
CG17266-PB 183 CG17266-PB 14..183 12..183 398 48 Plus