Clone Sequence Records
BS07120.3prime Sequence
932 bp (792 high quality bases) assembled on 2006-01-06
> BS07120.3prime
ATGGTCTAGAAAGCTTCTAGGCAAAAAGATTTTTAAGGGCATTTCGTTGT
TGTCGGTTGTACTGGGCCAGGAGCTGCTTGGTGCTGTTCAGTTCATTTAG
GATCTGTTTATTCTCCGGCAGGAGATTGTGAGCCGTTTTCAGATCGTTTA
TGGCCTCCTCGTAGTTGCGCAATCCGCGCTGCGCCTGGGCGCGTCGATAG
AAAGCCTTGCTACATTTCGGATCTAGACGAATGGCTTCGTTGCAAACTTC
TCTAGCGCTCGTATAGTTGCCAACTTTTAGGTCCACAGCGGCTGCATTAA
TGTTGTTTACCACGGAGAAGCCGTCGACCTTGAGCAGATCCTCATCTACA
AGGTGTTTTTTGAGAGGATTCAGCTGCTGCCAACCGAACTGTCTGCTCAG
GTAATGATAGTATCGATTCGCCTTGCGATATTTTGCCCGTGCTTCGTGAT
AGCGTCCAAGCTGATAGAAGTGATTGCCCGATTGGCGAATGCCCGTGAGA
AGTTCCACCGCCCCATCTCCTGTGAACTTGTCGAGCTTGCGCGGCCAGTC
TTGGGGATAGGCAGGCAACTTGTCCGTCGTCTCGTCGTTGCACTCGATGC
CCCAGTCCTCGTTGTGAGCTATCTCTCCGCAGTCCCGTATCACGATCGGC
GCCGTGGGATCGCCCTCGTCAGTGCAGTTTTGTTCCATTTCAGCTACGAT
ACCCAGGCCGCGTAAAACACGACCTACGACTACGTTTGTTCCATTCAGAT
TTTCACAGCCCGCGGCGGAAATGAAAAACTGCGAGTTGTTGGAGTTTGGC
TTGCCGTAGTTGGCCATGCTGACCACGCCCTCTTCGTTGTGTGAGAGTTC
GAAGTTCTCGTCATCGAAAACTGGTCCGTAGATGCTCTCGCCGCTGCTTC
CATCGTTTCTTCCCACATCCCCACTCTGGACG
BS07120.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8336-PB | 1152 | CG8336-RB | 262..1152 | 907..17 | 4455 | 100 | Minus |
CG8336-PA | 1152 | CG8336-RA | 262..1152 | 907..17 | 4455 | 100 | Minus |
CG8336-PC | 1152 | CG8336-RC | 262..1152 | 907..17 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8336-RD | 1395 | CG8336-RD | 381..1296 | 932..17 | 4535 | 99.8 | Minus |
CG8336-RC | 1445 | CG8336-RC | 431..1346 | 932..17 | 4535 | 99.8 | Minus |
CG8336-RA | 1500 | CG8336-RA | 486..1401 | 932..17 | 4535 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9631193..9631696 | 520..17 | 2520 | 100 | Minus |
3L | 28110227 | 3L | 9630818..9631139 | 841..520 | 1610 | 100 | Minus |
3L | 28110227 | 3L | 9630534..9630624 | 932..842 | 395 | 95.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:00:44 has no hits.
BS07120.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:44 Download gff for
BS07120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-PA | 237..1152 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:16 Download gff for
BS07120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-PC | 237..1152 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:09:35 Download gff for
BS07120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RA | 486..1401 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:56 Download gff for
BS07120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RA | 486..1401 | 17..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:56 Download gff for
BS07120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9630534..9630624 | 842..932 | 97 | -> | Minus |
3L | 9630818..9631138 | 521..841 | 100 | -> | Minus |
3L | 9631193..9631696 | 17..520 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:09:35 Download gff for
BS07120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9623634..9623724 | 842..932 | 97 | -> | Minus |
arm_3L | 9623918..9624238 | 521..841 | 100 | -> | Minus |
arm_3L | 9624293..9624796 | 17..520 | 100 | | Minus |
BS07120.5prime Sequence
875 bp (812 high quality bases) assembled on 2006-01-06
> BS07120.5prime
GAAGTTATCAGTCGACATGGAAGAACGCAAGCTGCTCCGCGCGGTGAAAT
CAACTAATCCACTGGTCTACCTGGACATTTCCATTGGCAAGGAGGATGCG
GGTCGAATGATAATTGAACTGCGCAAGGATGTTGTGCCGAAGACAGCGGA
AAATTTCCGTGCCCTGTGCACGGGCGAATGTGGTATCGGTACTCTGGGCA
AACCGCTCCACTACAAGGGCACAAAGTTCCACAAGATCAAGCGAGTCTTC
GTCGTCCAGAGTGGGGATGTGGTGAAGAACGATGGAAGCAGCGGCGAGAG
CATCTACGGACCAGTTTTCGATGACGAGAACTTCGAACTCTCACACAACG
AAGAGGGCGTGGTCAGCATGGCCAACTACGGCAAGCCAAACTCCAACAAC
TCGCAGTTTTTCATTTCCGCCGCGGGCTGTGAAAATCTGAATGGAACAAA
CGTAGTCGTAGGTCGTGTTTTACGCGGCCTGGGTATCGTAGCTGAAATGG
AACAAAACTGCACTGACGAGGGCGATCCCACGGCGCCGATCGTGATACGG
GACTGCGGAGAGATAGCTCACAACGAGGACTGGGGCATCGAGTGCAACGA
CGAGACGACGGACAAGTTGCCTGCCTATCCCCAAGACTGGCCGCGCAAGC
TCGACAAGTTCACAGGAGATGGGGCGGTGGAACTTCTCACGGGCATTCGC
CAATCGGGCAATCACTTCTATCAGCTTGGACGCTATCACGAAGCACGGGC
AAAATATCGCAAGGCGAATCGATACTATCATTACCTGAGCAGACAGTTCG
GTTGGCAGCAGCTGAATCCTCTCAAAAAACACCTTGTAGATGAGGATCTG
CTCAAGGTCGACGGCTTCTCCGTGG
BS07120.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8336-PB | 1152 | CG8336-RB | 1..859 | 17..875 | 4295 | 100 | Plus |
CG8336-PA | 1152 | CG8336-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
CG8336-PC | 1152 | CG8336-RC | 1..859 | 17..875 | 4295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8336-RD | 1395 | CG8336-RD | 145..1003 | 17..875 | 4295 | 100 | Plus |
CG8336-RC | 1445 | CG8336-RC | 195..1053 | 17..875 | 4295 | 100 | Plus |
CG8336-RA | 1500 | CG8336-RA | 250..1108 | 17..875 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9630818..9631139 | 344..665 | 1610 | 100 | Plus |
3L | 28110227 | 3L | 9630379..9630624 | 98..343 | 1230 | 100 | Plus |
3L | 28110227 | 3L | 9631193..9631403 | 665..875 | 1055 | 100 | Plus |
3L | 28110227 | 3L | 9630221..9630302 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:03:50 has no hits.
BS07120.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:45 Download gff for
BS07120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:18 Download gff for
BS07120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-PC | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:46:55 Download gff for
BS07120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RA | 250..1108 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:52 Download gff for
BS07120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RA | 250..1108 | 17..875 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:52 Download gff for
BS07120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9630818..9631138 | 344..664 | 100 | -> | Plus |
3L | 9630221..9630302 | 17..98 | 100 | -> | Plus |
3L | 9630380..9630624 | 99..343 | 100 | -> | Plus |
3L | 9631193..9631403 | 665..875 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:46:55 Download gff for
BS07120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9623321..9623402 | 17..98 | 100 | -> | Plus |
arm_3L | 9623480..9623724 | 99..343 | 100 | -> | Plus |
arm_3L | 9623918..9624238 | 344..664 | 100 | -> | Plus |
arm_3L | 9624293..9624503 | 665..875 | 100 | | Plus |
BS07120.complete Sequence
1184 bp (1184 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635736
> BS07120.complete
GAAGTTATCAGTCGACATGGAAGAACGCAAGCTGCTCCGCGCGGTGAAAT
CAACTAATCCACTGGTCTACCTGGACATTTCCATTGGCAAGGAGGATGCG
GGTCGAATGATAATTGAACTGCGCAAGGATGTTGTGCCGAAGACAGCGGA
AAATTTCCGTGCCCTGTGCACGGGCGAATGTGGTATCGGTACTCTGGGCA
AACCGCTCCACTACAAGGGCACAAAGTTCCACAAGATCAAGCGAGTCTTC
GTCGTCCAGAGTGGGGATGTGGTGAAGAACGATGGAAGCAGCGGCGAGAG
CATCTACGGACCAGTTTTCGATGACGAGAACTTCGAACTCTCACACAACG
AAGAGGGCGTGGTCAGCATGGCCAACTACGGCAAGCCAAACTCCAACAAC
TCGCAGTTTTTCATTTCCGCCGCGGGCTGTGAAAATCTGAATGGAACAAA
CGTAGTCGTAGGTCGTGTTTTACGCGGCCTGGGTATCGTAGCTGAAATGG
AACAAAACTGCACTGACGAGGGCGATCCCACGGCGCCGATCGTGATACGG
GACTGCGGAGAGATAGCTCACAACGAGGACTGGGGCATCGAGTGCAACGA
CGAGACGACGGACAAGTTGCCTGCCTATCCCCAAGACTGGCCGCGCAAGC
TCGACAAGTTCACAGGAGATGGGGCGGTGGAACTTCTCACGGGCATTCGC
CAATCGGGCAATCACTTCTATCAGCTTGGACGCTATCACGAAGCACGGGC
AAAATATCGCAAGGCGAATCGATACTATCATTACCTGAGCAGACAGTTCG
GTTGGCAGCAGCTGAATCCTCTCAAAAAACACCTTGTAGATGAGGATCTG
CTCAAGGTCGACGGCTTCTCCGTGGTAAACAACATTAATGCAGCCGCTGT
GGACCTAAAAGTTGGCAACTATACGAGCGCTAGAGAAGTTTGCAACGAAG
CCATTCGTCTAGATCCGAAATGTAGCAAGGCTTTCTATCGACGCGCCCAG
GCGCAGCGCGGATTGCGCAACTACGAGGAGGCCATAAACGATCTGAAAAC
GGCTCACAATCTCCTGCCGGAGAATAAACAGATCCTAAATGAACTGAACA
GCACCAAGCAGCTCCTGGCCCAGTACAACCGACAACAACGAAATGCCCTT
AAAAATCTTTTTGCCTAGAAGCTTTCTAGACCAT
BS07120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8336-RD | 1152 | CG8336-PD | 1..1152 | 17..1168 | 5760 | 100 | Plus |
CG8336-RC | 1152 | CG8336-PC | 1..1152 | 17..1168 | 5760 | 100 | Plus |
CG8336-RA | 1152 | CG8336-PA | 1..1152 | 17..1168 | 5760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8336-RD | 1395 | CG8336-RD | 145..1296 | 17..1168 | 5760 | 100 | Plus |
CG8336-RC | 1445 | CG8336-RC | 195..1346 | 17..1168 | 5760 | 100 | Plus |
CG8336-RA | 1500 | CG8336-RA | 250..1401 | 17..1168 | 5760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9631193..9631696 | 665..1168 | 2520 | 100 | Plus |
3L | 28110227 | 3L | 9630818..9631139 | 344..665 | 1610 | 100 | Plus |
3L | 28110227 | 3L | 9630379..9630624 | 98..343 | 1230 | 100 | Plus |
3L | 28110227 | 3L | 9630221..9630302 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:29:21 has no hits.
BS07120.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:57 Download gff for
BS07120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RC | 1..1152 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:09 Download gff for
BS07120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RC | 193..1344 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:30 Download gff for
BS07120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RA | 250..1401 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:57 Download gff for
BS07120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RC | 193..1344 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:47 Download gff for
BS07120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RA | 250..1401 | 17..1168 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:47 Download gff for
BS07120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9630818..9631138 | 344..664 | 100 | -> | Plus |
3L | 9630221..9630302 | 17..98 | 100 | -> | Plus |
3L | 9630380..9630624 | 99..343 | 100 | -> | Plus |
3L | 9631193..9631696 | 665..1168 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:30 Download gff for
BS07120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9623321..9623402 | 17..98 | 100 | -> | Plus |
arm_3L | 9623480..9623724 | 99..343 | 100 | -> | Plus |
arm_3L | 9623918..9624238 | 344..664 | 100 | -> | Plus |
arm_3L | 9624293..9624796 | 665..1168 | 100 | | Plus |
BS07120.pep Sequence
Translation from 16 to 1167
> BS07120.pep
MEERKLLRAVKSTNPLVYLDISIGKEDAGRMIIELRKDVVPKTAENFRAL
CTGECGIGTLGKPLHYKGTKFHKIKRVFVVQSGDVVKNDGSSGESIYGPV
FDDENFELSHNEEGVVSMANYGKPNSNNSQFFISAAGCENLNGTNVVVGR
VLRGLGIVAEMEQNCTDEGDPTAPIVIRDCGEIAHNEDWGIECNDETTDK
LPAYPQDWPRKLDKFTGDGAVELLTGIRQSGNHFYQLGRYHEARAKYRKA
NRYYHYLSRQFGWQQLNPLKKHLVDEDLLKVDGFSVVNNINAAAVDLKVG
NYTSAREVCNEAIRLDPKCSKAFYRRAQAQRGLRNYEEAINDLKTAHNLL
PENKQILNELNSTKQLLAQYNRQQRNALKNLFA*
BS07120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8336-PD | 383 | CG8336-PD | 1..383 | 1..383 | 2021 | 100 | Plus |
CG8336-PC | 383 | CG8336-PC | 1..383 | 1..383 | 2021 | 100 | Plus |
CG8336-PA | 383 | CG8336-PA | 1..383 | 1..383 | 2021 | 100 | Plus |
CG8336-PB | 383 | CG8336-PB | 1..383 | 1..383 | 2021 | 100 | Plus |
CG17266-PB | 183 | CG17266-PB | 14..183 | 12..183 | 398 | 48 | Plus |