Clone BS07124 Report

Search the DGRC for BS07124

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG9547-RA
Protein status:BS07124.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07124.3prime Sequence

930 bp (862 high quality bases) assembled on 2006-01-06

> BS07124.3prime
ATGGTCTAGAAAGCTTTTAGTTAGCAAATGCCGCCAGTCCGGTGATGGCT
CGGCCCAGGATCAACGCGTGTATATCGTGCGTGCCCTCATAGGTGTTAAC
TGACTCCAGGTTGATTACATGGCGGATCACATGATATTCGTCGCTGATTC
CGTTTGCACCCAGCATGTCCCTCATTTGGCGCGCTATATCAAGCGATTTG
CCAGTATTGTTTCGCTTTAGAAGGGAAATCATGTCGGGCGTGTGCAGCTT
CTGATCCTTGAGGCGACCCACATGCAGGCAAGCCTGCAGACCCAACGCAA
TCTCTGTGATGGCATCGGCCAGCTTCTTTTGGATCAACTGATTTGCAGCC
AAAGGACGACCGAATTGTTTGCGATCCAGTGTATACTGGCGAGCAATCTC
CACGCAGGTTTCAGCTGCTCCCAGGGCTCCCCACGCGATTCCATAGCGAG
CGTTGTTCAGACAGCTGAAGGGTCCACTAAAGCCGGCCACATTGGGTAGC
AACTGCTCCTCTGGCACACGGACCTCGTCCATCAGGATCATACCCGTGGG
CGAAGCACGCAGAGAGAACTTGCCCTCGATCTTTGGCGTCTCCAAACCCT
TGCCGGATATCTTGCGATCCACCAGGAAGCCGCGTACCTTGCCATCCTCG
CATTTTGCCCATACGACTATGACGTCTGCGATGGGCGCACTAGTAATCCA
CGTCTTAGATCCGTTCAGGATGTATGTCTTGCTTTTGCTATCGTACTTGG
CACGGGTCTCCATGCCAGCGGGGTCACTACCGTGGTTGGGTTCAGTTAGG
CCAAAGGCACCAATCAGCTTGCCCTCCGCCATGCTGGGCAAATAGCGTTG
CTTCTGCTCCTCGGATCCAAAGTCGTAGATGGCGCCCATGGCCAGCGAGC
TCTGGACACTGACAGCAGACCGAATAGCGG

BS07124.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9547-PA 1260 CG9547-RA 354..1260 923..17 4535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9547-RA 1441 CG9547-RA 441..1354 930..17 4540 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6493061..6493855 17..811 3975 100 Plus
2L 23513712 2L 6493970..6494092 808..930 585 98.4 Plus
Blast to na_te.dros performed on 2015-02-06 11:55:06 has no hits.

BS07124.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:53 Download gff for BS07124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9547-PA 347..1260 17..930 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:27 Download gff for BS07124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9547-PA 347..1260 17..930 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:39:26 Download gff for BS07124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9547-RA 441..1354 17..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:48:20 Download gff for BS07124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9547-RA 441..1354 17..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:48:20 Download gff for BS07124.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6493973..6494092 811..930 98   Plus
2L 6493061..6493854 17..810 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:39:26 Download gff for BS07124.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6493973..6494092 811..930 98   Plus
arm_2L 6493061..6493854 17..810 100 <- Plus

BS07124.5prime Sequence

965 bp (764 high quality bases) assembled on 2006-01-06

> BS07124.5prime
GAAGTTATCAGTCGACATGATTGCGCAAAGTGTAATCAGCAAACTGCGAC
CGTGTGCCCGCCGCTTGGCCAGCACGAGCTCCAAAGCCGCAGCTCCCAAA
TTCAACTGGCAGGATCCGCTGAATTTGGAGAGCCAATTGACCGAGGAAGA
GGTGGCCATTCGGGATGCGTTCCGTGGATACTGTCAGGCCGAGCTGCAGC
CGCGCGTCAAGATGGCCAATCGCCTGGAGACGTTCGACAAGAAAATTATG
GAGGAGATCGGCAGTCTGGGTGTCCTCGGCTGCACCATTAAGGGATACGG
CTGCGCCGGAGTCTCTAGCGTTGCCTACGGCTTGCTCACCCGCGAGGTGG
AGCGCGTGGACTCCGCTTATCGGTCTGCTGTCAGTGTCCAGAGCTCGCTG
GCCATGGGCGCCATCTACGACTTTGGATCCGAGGAGCAGAAGCAACGCTA
TTTGCCCAGCATGGCGGAGGGCAAGCTGATTGGTGCCTTTGGCCTAACTG
AACCCAACCACGGTAGTGACCCCGCTGGCATGGAGACCCGTGCCAAGTAC
GATAGCAAAAGCAAGACATACATCCTGAACGGATCTAAGACGTGGATTAC
TAGTGCGCCCATCGCAGACGTCATAGTCGTATGGGCAAAATGCGAGGATG
GCAAGGTACGCGGCTTCCTGGTGGATCGCAAGATATCCGGCAAGGGTTTG
GAGACGCCAAAGATCGAGGGCAAGTTCTCTCTGCGTGCTTCGCCCACGGG
TATGATCCTGATGGACGAGGTCCGTGTGCCAGAGGAGCAGTTGCTACCCA
ATGTGGCCGGCTTTAGTGGACCCTTCAGCTGTCTGAACAACGCTCGCTAT
GGAATCGCGTGGGGAGCCCTGGGAGCAGCTGAAACCTGCGTGGAGATTGC
TCGCCAGTATACACTGGATCGCAAACAATTCGGTCGTCCTTTGGCTGCAA
ATCAGTTGATCCAAA

BS07124.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9547-PA 1260 CG9547-RA 1..949 17..965 4745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9547-RA 1441 CG9547-RA 95..1043 17..965 4745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6493372..6493855 965..482 2420 100 Minus
2L 23513712 2L 6493970..6494438 485..17 2345 100 Minus
Blast to na_te.dros performed on 2015-02-10 04:47:05 has no hits.

BS07124.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:54 Download gff for BS07124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9547-PA 1..946 17..962 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:29 Download gff for BS07124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9547-PA 1..946 17..962 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:47 Download gff for BS07124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9547-RA 95..1040 17..962 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:42 Download gff for BS07124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9547-RA 95..1040 17..962 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:42 Download gff for BS07124.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6493375..6493854 483..962 100 <- Minus
2L 6493973..6494436 19..482 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:47 Download gff for BS07124.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6493375..6493854 483..962 100 <- Minus
arm_2L 6493973..6494436 19..482 100 <- Minus

BS07124.complete Sequence

1292 bp (1292 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635737

> BS07124.complete
GAAGTTATCAGTCGACATGATTGCGCAAAGTGTAATCAGCAAACTGCGAC
CGTGTGCCCGCCGCTTGGCCAGCACGAGCTCCAAAGCCGCAGCTCCCAAA
TTCAACTGGCAGGATCCGCTGAATTTGGAGAGCCAATTGACCGAGGAAGA
GGTGGCCATTCGGGATGCGTTCCGTGGATACTGTCAGGCCGAGCTGCAGC
CGCGCGTCAAGATGGCCAATCGCCTGGAGACGTTCGACAAGAAAATTATG
GAGGAGATCGGCAGTCTGGGTGTCCTCGGCTGCACCATTAAGGGATACGG
CTGCGCCGGAGTCTCTAGCGTTGCCTACGGCTTGCTCACCCGCGAGGTGG
AGCGCGTGGACTCCGCTTATCGGTCTGCTGTCAGTGTCCAGAGCTCGCTG
GCCATGGGCGCCATCTACGACTTTGGATCCGAGGAGCAGAAGCAACGCTA
TTTGCCCAGCATGGCGGAGGGCAAGCTGATTGGTGCCTTTGGCCTAACTG
AACCCAACCACGGTAGTGACCCCGCTGGCATGGAGACCCGTGCCAAGTAC
GATAGCAAAAGCAAGACATACATCCTGAACGGATCTAAGACGTGGATTAC
TAGTGCGCCCATCGCAGACGTCATAGTCGTATGGGCAAAATGCGAGGATG
GCAAGGTACGCGGCTTCCTGGTGGATCGCAAGATATCCGGCAAGGGTTTG
GAGACGCCAAAGATCGAGGGCAAGTTCTCTCTGCGTGCTTCGCCCACGGG
TATGATCCTGATGGACGAGGTCCGTGTGCCAGAGGAGCAGTTGCTACCCA
ATGTGGCCGGCTTTAGTGGACCCTTCAGCTGTCTGAACAACGCTCGCTAT
GGAATCGCGTGGGGAGCCCTGGGAGCAGCTGAAACCTGCGTGGAGATTGC
TCGCCAGTATACACTGGATCGCAAACAATTCGGTCGTCCTTTGGCTGCAA
ATCAGTTGATCCAAAAGAAGCTGGCCGATGCCATCACAGAGATTGCGTTG
GGTCTGCAGGCTTGCCTGCATGTGGGTCGCCTCAAGGATCAGAAGCTGCA
CACGCCCGACATGATTTCCCTTCTAAAGCGAAACAATACTGGCAAATCGC
TTGATATAGCGCGCCAAATGAGGGACATGCTGGGTGCAAACGGAATCAGC
GACGAATATCATGTGATCCGCCATGTAATCAACCTGGAGTCAGTTAACAC
CTATGAGGGCACGCACGATATACACGCGTTGATCCTGGGCCGAGCCATCA
CCGGACTGGCGGCATTTGCTAACTAAAAGCTTTCTAGACCAT

BS07124.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9547-RA 1260 CG9547-PA 1..1260 17..1276 6300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9547-RA 1441 CG9547-RA 95..1354 17..1276 6300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6493061..6493855 1276..482 3975 100 Minus
2L 23513712 2L 6493970..6494438 485..17 2345 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:51:10 has no hits.

BS07124.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:58 Download gff for BS07124.complete
Subject Subject Range Query Range Percent Splice Strand
CG9547-RA 1..1260 17..1276 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:10 Download gff for BS07124.complete
Subject Subject Range Query Range Percent Splice Strand
CG9547-RA 90..1349 17..1276 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:48 Download gff for BS07124.complete
Subject Subject Range Query Range Percent Splice Strand
CG9547-RA 95..1352 17..1274 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:58 Download gff for BS07124.complete
Subject Subject Range Query Range Percent Splice Strand
CG9547-RA 90..1349 17..1276 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:38 Download gff for BS07124.complete
Subject Subject Range Query Range Percent Splice Strand
CG9547-RA 95..1352 17..1274 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:38 Download gff for BS07124.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6493063..6493854 483..1274 100 <- Minus
2L 6493973..6494438 17..482 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:48 Download gff for BS07124.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6493973..6494438 17..482 100   Minus
arm_2L 6493063..6493854 483..1274 100 <- Minus

BS07124.pep Sequence

Translation from 16 to 1275

> BS07124.pep
MIAQSVISKLRPCARRLASTSSKAAAPKFNWQDPLNLESQLTEEEVAIRD
AFRGYCQAELQPRVKMANRLETFDKKIMEEIGSLGVLGCTIKGYGCAGVS
SVAYGLLTREVERVDSAYRSAVSVQSSLAMGAIYDFGSEEQKQRYLPSMA
EGKLIGAFGLTEPNHGSDPAGMETRAKYDSKSKTYILNGSKTWITSAPIA
DVIVVWAKCEDGKVRGFLVDRKISGKGLETPKIEGKFSLRASPTGMILMD
EVRVPEEQLLPNVAGFSGPFSCLNNARYGIAWGALGAAETCVEIARQYTL
DRKQFGRPLAANQLIQKKLADAITEIALGLQACLHVGRLKDQKLHTPDMI
SLLKRNNTGKSLDIARQMRDMLGANGISDEYHVIRHVINLESVNTYEGTH
DIHALILGRAITGLAAFAN*

BS07124.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9547-PA 419 CG9547-PA 1..419 1..419 2141 100 Plus
CG4860-PA 415 CG4860-PA 37..408 41..411 419 29.7 Plus
CG3902-PA 414 CG3902-PA 37..408 41..411 410 29.5 Plus
Arc42-PA 405 CG4703-PA 25..399 39..411 404 29 Plus
CG12262-PA 419 CG12262-PA 10..409 12..409 377 29.5 Plus