Clone Sequence Records
BS07124.3prime Sequence
930 bp (862 high quality bases) assembled on 2006-01-06
> BS07124.3prime
ATGGTCTAGAAAGCTTTTAGTTAGCAAATGCCGCCAGTCCGGTGATGGCT
CGGCCCAGGATCAACGCGTGTATATCGTGCGTGCCCTCATAGGTGTTAAC
TGACTCCAGGTTGATTACATGGCGGATCACATGATATTCGTCGCTGATTC
CGTTTGCACCCAGCATGTCCCTCATTTGGCGCGCTATATCAAGCGATTTG
CCAGTATTGTTTCGCTTTAGAAGGGAAATCATGTCGGGCGTGTGCAGCTT
CTGATCCTTGAGGCGACCCACATGCAGGCAAGCCTGCAGACCCAACGCAA
TCTCTGTGATGGCATCGGCCAGCTTCTTTTGGATCAACTGATTTGCAGCC
AAAGGACGACCGAATTGTTTGCGATCCAGTGTATACTGGCGAGCAATCTC
CACGCAGGTTTCAGCTGCTCCCAGGGCTCCCCACGCGATTCCATAGCGAG
CGTTGTTCAGACAGCTGAAGGGTCCACTAAAGCCGGCCACATTGGGTAGC
AACTGCTCCTCTGGCACACGGACCTCGTCCATCAGGATCATACCCGTGGG
CGAAGCACGCAGAGAGAACTTGCCCTCGATCTTTGGCGTCTCCAAACCCT
TGCCGGATATCTTGCGATCCACCAGGAAGCCGCGTACCTTGCCATCCTCG
CATTTTGCCCATACGACTATGACGTCTGCGATGGGCGCACTAGTAATCCA
CGTCTTAGATCCGTTCAGGATGTATGTCTTGCTTTTGCTATCGTACTTGG
CACGGGTCTCCATGCCAGCGGGGTCACTACCGTGGTTGGGTTCAGTTAGG
CCAAAGGCACCAATCAGCTTGCCCTCCGCCATGCTGGGCAAATAGCGTTG
CTTCTGCTCCTCGGATCCAAAGTCGTAGATGGCGCCCATGGCCAGCGAGC
TCTGGACACTGACAGCAGACCGAATAGCGG
BS07124.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9547-PA | 1260 | CG9547-RA | 354..1260 | 923..17 | 4535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9547-RA | 1441 | CG9547-RA | 441..1354 | 930..17 | 4540 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:55:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6493061..6493855 | 17..811 | 3975 | 100 | Plus |
2L | 23513712 | 2L | 6493970..6494092 | 808..930 | 585 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:55:06 has no hits.
BS07124.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:53 Download gff for
BS07124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9547-PA | 347..1260 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:27 Download gff for
BS07124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9547-PA | 347..1260 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:39:26 Download gff for
BS07124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9547-RA | 441..1354 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:48:20 Download gff for
BS07124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9547-RA | 441..1354 | 17..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:48:20 Download gff for
BS07124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6493973..6494092 | 811..930 | 98 | | Plus |
2L | 6493061..6493854 | 17..810 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:39:26 Download gff for
BS07124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6493973..6494092 | 811..930 | 98 | | Plus |
arm_2L | 6493061..6493854 | 17..810 | 100 | <- | Plus |
BS07124.5prime Sequence
965 bp (764 high quality bases) assembled on 2006-01-06
> BS07124.5prime
GAAGTTATCAGTCGACATGATTGCGCAAAGTGTAATCAGCAAACTGCGAC
CGTGTGCCCGCCGCTTGGCCAGCACGAGCTCCAAAGCCGCAGCTCCCAAA
TTCAACTGGCAGGATCCGCTGAATTTGGAGAGCCAATTGACCGAGGAAGA
GGTGGCCATTCGGGATGCGTTCCGTGGATACTGTCAGGCCGAGCTGCAGC
CGCGCGTCAAGATGGCCAATCGCCTGGAGACGTTCGACAAGAAAATTATG
GAGGAGATCGGCAGTCTGGGTGTCCTCGGCTGCACCATTAAGGGATACGG
CTGCGCCGGAGTCTCTAGCGTTGCCTACGGCTTGCTCACCCGCGAGGTGG
AGCGCGTGGACTCCGCTTATCGGTCTGCTGTCAGTGTCCAGAGCTCGCTG
GCCATGGGCGCCATCTACGACTTTGGATCCGAGGAGCAGAAGCAACGCTA
TTTGCCCAGCATGGCGGAGGGCAAGCTGATTGGTGCCTTTGGCCTAACTG
AACCCAACCACGGTAGTGACCCCGCTGGCATGGAGACCCGTGCCAAGTAC
GATAGCAAAAGCAAGACATACATCCTGAACGGATCTAAGACGTGGATTAC
TAGTGCGCCCATCGCAGACGTCATAGTCGTATGGGCAAAATGCGAGGATG
GCAAGGTACGCGGCTTCCTGGTGGATCGCAAGATATCCGGCAAGGGTTTG
GAGACGCCAAAGATCGAGGGCAAGTTCTCTCTGCGTGCTTCGCCCACGGG
TATGATCCTGATGGACGAGGTCCGTGTGCCAGAGGAGCAGTTGCTACCCA
ATGTGGCCGGCTTTAGTGGACCCTTCAGCTGTCTGAACAACGCTCGCTAT
GGAATCGCGTGGGGAGCCCTGGGAGCAGCTGAAACCTGCGTGGAGATTGC
TCGCCAGTATACACTGGATCGCAAACAATTCGGTCGTCCTTTGGCTGCAA
ATCAGTTGATCCAAA
BS07124.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9547-PA | 1260 | CG9547-RA | 1..949 | 17..965 | 4745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:47:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9547-RA | 1441 | CG9547-RA | 95..1043 | 17..965 | 4745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6493372..6493855 | 965..482 | 2420 | 100 | Minus |
2L | 23513712 | 2L | 6493970..6494438 | 485..17 | 2345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:47:05 has no hits.
BS07124.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:02:54 Download gff for
BS07124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9547-PA | 1..946 | 17..962 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:29 Download gff for
BS07124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9547-PA | 1..946 | 17..962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:47 Download gff for
BS07124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9547-RA | 95..1040 | 17..962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:42 Download gff for
BS07124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9547-RA | 95..1040 | 17..962 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:42 Download gff for
BS07124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6493375..6493854 | 483..962 | 100 | <- | Minus |
2L | 6493973..6494436 | 19..482 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:47 Download gff for
BS07124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6493375..6493854 | 483..962 | 100 | <- | Minus |
arm_2L | 6493973..6494436 | 19..482 | 100 | <- | Minus |
BS07124.complete Sequence
1292 bp (1292 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635737
> BS07124.complete
GAAGTTATCAGTCGACATGATTGCGCAAAGTGTAATCAGCAAACTGCGAC
CGTGTGCCCGCCGCTTGGCCAGCACGAGCTCCAAAGCCGCAGCTCCCAAA
TTCAACTGGCAGGATCCGCTGAATTTGGAGAGCCAATTGACCGAGGAAGA
GGTGGCCATTCGGGATGCGTTCCGTGGATACTGTCAGGCCGAGCTGCAGC
CGCGCGTCAAGATGGCCAATCGCCTGGAGACGTTCGACAAGAAAATTATG
GAGGAGATCGGCAGTCTGGGTGTCCTCGGCTGCACCATTAAGGGATACGG
CTGCGCCGGAGTCTCTAGCGTTGCCTACGGCTTGCTCACCCGCGAGGTGG
AGCGCGTGGACTCCGCTTATCGGTCTGCTGTCAGTGTCCAGAGCTCGCTG
GCCATGGGCGCCATCTACGACTTTGGATCCGAGGAGCAGAAGCAACGCTA
TTTGCCCAGCATGGCGGAGGGCAAGCTGATTGGTGCCTTTGGCCTAACTG
AACCCAACCACGGTAGTGACCCCGCTGGCATGGAGACCCGTGCCAAGTAC
GATAGCAAAAGCAAGACATACATCCTGAACGGATCTAAGACGTGGATTAC
TAGTGCGCCCATCGCAGACGTCATAGTCGTATGGGCAAAATGCGAGGATG
GCAAGGTACGCGGCTTCCTGGTGGATCGCAAGATATCCGGCAAGGGTTTG
GAGACGCCAAAGATCGAGGGCAAGTTCTCTCTGCGTGCTTCGCCCACGGG
TATGATCCTGATGGACGAGGTCCGTGTGCCAGAGGAGCAGTTGCTACCCA
ATGTGGCCGGCTTTAGTGGACCCTTCAGCTGTCTGAACAACGCTCGCTAT
GGAATCGCGTGGGGAGCCCTGGGAGCAGCTGAAACCTGCGTGGAGATTGC
TCGCCAGTATACACTGGATCGCAAACAATTCGGTCGTCCTTTGGCTGCAA
ATCAGTTGATCCAAAAGAAGCTGGCCGATGCCATCACAGAGATTGCGTTG
GGTCTGCAGGCTTGCCTGCATGTGGGTCGCCTCAAGGATCAGAAGCTGCA
CACGCCCGACATGATTTCCCTTCTAAAGCGAAACAATACTGGCAAATCGC
TTGATATAGCGCGCCAAATGAGGGACATGCTGGGTGCAAACGGAATCAGC
GACGAATATCATGTGATCCGCCATGTAATCAACCTGGAGTCAGTTAACAC
CTATGAGGGCACGCACGATATACACGCGTTGATCCTGGGCCGAGCCATCA
CCGGACTGGCGGCATTTGCTAACTAAAAGCTTTCTAGACCAT
BS07124.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9547-RA | 1260 | CG9547-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9547-RA | 1441 | CG9547-RA | 95..1354 | 17..1276 | 6300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6493061..6493855 | 1276..482 | 3975 | 100 | Minus |
2L | 23513712 | 2L | 6493970..6494438 | 485..17 | 2345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:51:10 has no hits.
BS07124.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:58 Download gff for
BS07124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9547-RA | 1..1260 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:10 Download gff for
BS07124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9547-RA | 90..1349 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:48 Download gff for
BS07124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9547-RA | 95..1352 | 17..1274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:58 Download gff for
BS07124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9547-RA | 90..1349 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:38 Download gff for
BS07124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9547-RA | 95..1352 | 17..1274 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:38 Download gff for
BS07124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6493063..6493854 | 483..1274 | 100 | <- | Minus |
2L | 6493973..6494438 | 17..482 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:48 Download gff for
BS07124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6493973..6494438 | 17..482 | 100 | | Minus |
arm_2L | 6493063..6493854 | 483..1274 | 100 | <- | Minus |
BS07124.pep Sequence
Translation from 16 to 1275
> BS07124.pep
MIAQSVISKLRPCARRLASTSSKAAAPKFNWQDPLNLESQLTEEEVAIRD
AFRGYCQAELQPRVKMANRLETFDKKIMEEIGSLGVLGCTIKGYGCAGVS
SVAYGLLTREVERVDSAYRSAVSVQSSLAMGAIYDFGSEEQKQRYLPSMA
EGKLIGAFGLTEPNHGSDPAGMETRAKYDSKSKTYILNGSKTWITSAPIA
DVIVVWAKCEDGKVRGFLVDRKISGKGLETPKIEGKFSLRASPTGMILMD
EVRVPEEQLLPNVAGFSGPFSCLNNARYGIAWGALGAAETCVEIARQYTL
DRKQFGRPLAANQLIQKKLADAITEIALGLQACLHVGRLKDQKLHTPDMI
SLLKRNNTGKSLDIARQMRDMLGANGISDEYHVIRHVINLESVNTYEGTH
DIHALILGRAITGLAAFAN*
BS07124.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9547-PA | 419 | CG9547-PA | 1..419 | 1..419 | 2141 | 100 | Plus |
CG4860-PA | 415 | CG4860-PA | 37..408 | 41..411 | 419 | 29.7 | Plus |
CG3902-PA | 414 | CG3902-PA | 37..408 | 41..411 | 410 | 29.5 | Plus |
Arc42-PA | 405 | CG4703-PA | 25..399 | 39..411 | 404 | 29 | Plus |
CG12262-PA | 419 | CG12262-PA | 10..409 | 12..409 | 377 | 29.5 | Plus |