Clone BS07133 Report

Search the DGRC for BS07133

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptMfap1-RA
Protein status:BS07133.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07133.3prime Sequence

977 bp (889 high quality bases) assembled on 2006-01-06

> BS07133.3prime
ATGGTCTAGAAAGCTTCTACTCCATCTTTTTTCGCTTCGAGCCGGTGGGC
TTGTCAAACTGCTGCCTCATGCCGCCGGCGTGTTCGTTGTGGAACTTGAT
GTTGCTGGATGACTCGGCGTACCAGGGCGAGTCGAACTTGGTGGTGTCCT
GGTCCACTAAATGAGTGTACTTGGTGCGGCCGCAGCGGCCGAAGTTCTTC
ACCTGCATCACCTTGGGCAGAATGGTCTTATCGAAGTGATCCTCCAGCGT
GGCCTGGGCGAAGTCGCGCTTGAGGACGTCGTTCTCCTCATCCAGGTAGA
AGGCACCACGATGATAGTACTTCTGCAGGAACTTGTACTTGCCCTTGGTG
GCCTTGTTGGTGACCACCTTGGGGTTCTGGCGCAGCTCCTGGCGTCGCTC
CTCTTCGGTCATGTTGCGCATGCGATCAATGTCCAGCTTCTCGCGTTCGA
CGTTATCACGTTCCTCGCGATCCCGCTTCATTCGCTTGAGTTCACGCAGC
TTCCAGGCCTCGTATTCCACCTCGTCGTTTTCGTCGTCCGTGCACACGTC
CTCGATGCAGGCCTCATTGGTCTCCGGCTTGGTCTTCTCCAGATCTTTCT
TGACGCTCTCCTCGACCATTCGCAGGGTGGCTCTTCTGCGCTCCTTGGCT
GCCCGCTTGGCCTCCGCCTCCAGCTGCTTCTGCTTCTGAGCCTCTCGCTC
CTTCTCCTGGATGGTGGCACGATCTCTCTTTCGGACGAAGAGCGGCTTCA
GGCGGGGTTCGTTGTCCTCCTCGCTTTCGGTCTCCTCCTCGTACTCGGAG
CTTTCTGATTCGGACGATTCCGACTGTTTCTCATCCTCTTTCTGTAGAAC
CTCCTCCTCGCGCTGCTGCTGCAGCATGCGGGATCTCAGCTTGGTGCGCC
GGTTCTCCAGCTCTGTGTCGCTGAGCTCCGCATCCGTGTCGGATTTCGAT
GCCAGTGTGATCTTATTGGTGCCCCGC

BS07133.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1017-PA 1437 CG1017-RA 477..1437 977..17 4755 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 00:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
Mfap1-RA 1682 CG1017-RA 585..1545 977..17 4775 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 00:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1941713..1942237 977..453 2595 99.6 Minus
3L 28110227 3L 1942300..1942735 452..17 2180 100 Minus
Blast to na_te.dros performed 2015-02-09 00:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1057..1148 717..627 114 62.4 Minus

BS07133.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:11 Download gff for BS07133.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1017-PA 477..1437 17..977 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:51 Download gff for BS07133.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1017-PA 477..1437 17..977 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:48:50 Download gff for BS07133.3prime
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 585..1549 11..977 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:04:25 Download gff for BS07133.3prime
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 585..1549 11..977 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:04:25 Download gff for BS07133.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1941713..1942237 453..977 99 -> Minus
3L 1942300..1942739 11..452 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:48:50 Download gff for BS07133.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1941713..1942237 453..977 99 -> Minus
arm_3L 1942300..1942739 11..452 99   Minus

BS07133.5prime Sequence

884 bp (831 high quality bases) assembled on 2006-01-06

> BS07133.5prime
GAAGTTATCAGTCGACATGAGTGCAGCCACCGCCGCCGCCGCCGCTTCTG
GGATCCAGAGCACAGCGGGCGCCATTCCCATGCGCAATGAGAAAGGTGAA
TTGTCCATGCAAAAGGTGAAGGTGCAGCGATACATATCCGGTAAGCGACC
CGACTACGCCCGTGCGGACTCCAGTTCGGAGGAGAGCGACGACGATGACT
TCATTGACACCAGGAAGCGCCTTGAGCGCCACAAGGCGGAACGGCATAAG
CTGGAGCTCTCCCGTCAAGGCGGCAGCGCGGAGGGCGAAGAGCGGGCGGC
GGGTGAGGGCCAGGAGGAGGACGATGCCGAGGTGGACGATCCACGCCTCC
GAAGATTGCGGCAGCGACCCGTAGACATGGAGGACATGGAACGTGAGCGG
AGGGAACGCCACCGACACATCCACGAACCGGAAATCATGGAGAGTGACAG
CGAAGACGAGGAGGAAGACGAGGGAGCACAGGGAGCGATTCAGCGGGGCA
CCAATAAGATCACACTGGCATCCGAATCCGACACGGATGCGGAGCTCAGC
GACACAGAGCTGGAGAACCGGCGCACCAAGCTGAGATCCCGCATGCTGCA
GCAGCAGCGCGAGGAGGAGGTTCTACAGAAAGAGGATGAGAAACAGTCGG
AATCGTCCGAATCAGAAAGCTCCGAGTACGAGGAGGAGACCGAAAGCGAG
GAGGACAACGAACCCCGCCTGAAGCCGCTCTTCGTCCGAAAGAGAGATCG
TGCCACCATCCAGGAGAAGGAGCGAGAGGCTCAGAAGCAGAAGCAGCTGG
AGGCGGAGGCCAAGCGGGCAGCCAAGGAGCGCAGAAGAGCCACCCTGCGA
ATGGTCGAGGAGAGCGTCAAGAAAGATCTGGAGA

BS07133.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1017-PA 1437 CG1017-RA 1..868 17..884 4340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Mfap1-RA 1682 CG1017-RA 109..976 17..884 4340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1941314..1942104 94..884 3955 100 Plus
3L 28110227 3L 1941176..1941256 17..97 405 100 Plus
Blast to na_te.dros performed 2015-02-11 09:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1057..1148 753..843 114 62.4 Plus

BS07133.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:12 Download gff for BS07133.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1017-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:54 Download gff for BS07133.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1017-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:07:57 Download gff for BS07133.5prime
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 105..975 9..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:36:12 Download gff for BS07133.5prime
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 105..975 9..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:36:12 Download gff for BS07133.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1941172..1941254 9..95 95 -> Plus
3L 1941316..1942103 96..883 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:07:57 Download gff for BS07133.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1941172..1941254 9..95 95 -> Plus
arm_3L 1941316..1942103 96..883 100   Plus

BS07133.complete Sequence

1469 bp (1469 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635738

> BS07133.complete
GAAGTTATCAGTCGACATGAGTGCAGCCACCGCCGCCGCCGCCGCTTCTG
GGATCCAGAGCACAGCGGGCGCCATTCCCATGCGCAATGAGAAAGGTGAA
TTGTCCATGCAAAAGGTGAAGGTGCAGCGATACATATCCGGTAAGCGACC
CGACTACGCCCGTGCGGACTCCAGTTCGGAGGAGAGCGACGACGATGACT
TCATTGACACCAGGAAGCGCCTTGAGCGCCACAAGGCGGAACGGCATAAG
CTGGAGCTCTCCCGTCAAGGCGGCAGCGCGGAGGGCGAAGAGCGGGCGGC
GGGTGAGGGCCAGGAGGAGGACGATGCCGAGGTGGACGATCCACGCCTCC
GAAGATTGCGGCAGCGACCCGTAGACATGGAGGACATGGAACGTGAGCGG
AGGGAACGCCACCGACACATCCACGAACCGGAAATCATGGAGAGTGACAG
CGAAGACGAGGAGGAAGACGAGGGAGCACAGGGAGCGATTCAGCGGGGCA
CCAATAAGATCACACTGGCATCCGAATCCGACACGGATGCGGAGCTCAGC
GACACAGAGCTGGAGAACCGGCGCACCAAGCTGAGATCCCGCATGCTGCA
GCAGCAGCGCGAGGAGGAGGTTCTACAGAAAGAGGATGAGAAACAGTCGG
AATCGTCCGAATCAGAAAGCTCCGAGTACGAGGAGGAGACCGAAAGCGAG
GAGGACAACGAACCCCGCCTGAAGCCGCTCTTCGTCCGAAAGAGAGATCG
TGCCACCATCCAGGAGAAGGAGCGAGAGGCTCAGAAGCAGAAGCAGCTGG
AGGCGGAGGCCAAGCGGGCAGCCAAGGAGCGCAGAAGAGCCACCCTGCGA
ATGGTCGAGGAGAGCGTCAAGAAAGATCTGGAGAAGACCAAGCCGGAGAC
CAATGAGGCCTGCATCGAGGACGTGTGCACGGACGACGAAAACGACGAGG
TGGAATACGAGGCCTGGAAGCTGCGTGAACTCAAGCGAATGAAGCGGGAT
CGCGAGGAACGTGATAACGTCGAACGCGAGAAGCTGGACATTGATCGCAT
GCGCAACATGACCGAAGAGGAGCGACGCCAGGAGCTGCGCCAGAACCCCA
AGGTGGTCACCAACAAGGCCACCAAGGGCAAGTACAAGTTCCTGCAGAAG
TACTATCATCGTGGTGCCTTCTACCTGGATGAGGAGAACGACGTCCTCAA
GCGCGACTTCGCCCAGGCCACGCTGGAGGATCACTTCGATAAGACCATTC
TGCCCAAGGTGATGCAGGTGAAGAACTTCGGCCGCTGCGGCCGCACCAAG
TACACTCATTTAGTGGACCAGGACACCACCAAGTTCGACTCGCCCTGGTA
CGCCGAGTCATCCAGCAACATCAAGTTCCACAACGAACACGCCGGCGGCA
TGAGGCAGCAGTTTGACAAGCCCACCGGCTCGAAGCGAAAAAAGATGGAG
TAGAAGCTTTCTAGACCAT

BS07133.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Mfap1-RA 1437 CG1017-PA 1..1437 17..1453 7185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
Mfap1-RA 1682 CG1017-RA 109..1545 17..1453 7185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1941314..1942237 94..1017 4620 100 Plus
3L 28110227 3L 1942300..1942735 1018..1453 2180 100 Plus
3L 28110227 3L 1941176..1941256 17..97 405 100 Plus
Blast to na_te.dros performed 2014-11-27 08:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1057..1148 753..843 114 62.4 Plus

BS07133.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:00 Download gff for BS07133.complete
Subject Subject Range Query Range Percent Splice Strand
CG1017-RA 1..1437 17..1453 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:14 Download gff for BS07133.complete
Subject Subject Range Query Range Percent Splice Strand
CG1017-RA 111..1555 9..1459 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:19 Download gff for BS07133.complete
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 109..1545 17..1453 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:01 Download gff for BS07133.complete
Subject Subject Range Query Range Percent Splice Strand
CG1017-RA 111..1555 9..1459 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:53 Download gff for BS07133.complete
Subject Subject Range Query Range Percent Splice Strand
Mfap1-RA 109..1545 17..1453 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:53 Download gff for BS07133.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1941176..1941254 17..95 100 -> Plus
3L 1941316..1942237 96..1017 100 -> Plus
3L 1942300..1942735 1018..1453 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:19 Download gff for BS07133.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1941176..1941254 17..95 100 -> Plus
arm_3L 1941316..1942237 96..1017 100 -> Plus
arm_3L 1942300..1942735 1018..1453 100   Plus

BS07133.pep Sequence

Translation from 16 to 1452

> BS07133.pep
MSAATAAAAASGIQSTAGAIPMRNEKGELSMQKVKVQRYISGKRPDYARA
DSSSEESDDDDFIDTRKRLERHKAERHKLELSRQGGSAEGEERAAGEGQE
EDDAEVDDPRLRRLRQRPVDMEDMERERRERHRHIHEPEIMESDSEDEEE
DEGAQGAIQRGTNKITLASESDTDAELSDTELENRRTKLRSRMLQQQREE
EVLQKEDEKQSESSESESSEYEEETESEEDNEPRLKPLFVRKRDRATIQE
KEREAQKQKQLEAEAKRAAKERRRATLRMVEESVKKDLEKTKPETNEACI
EDVCTDDENDEVEYEAWKLRELKRMKRDREERDNVEREKLDIDRMRNMTE
EERRQELRQNPKVVTNKATKGKYKFLQKYYHRGAFYLDEENDVLKRDFAQ
ATLEDHFDKTILPKVMQVKNFGRCGRTKYTHLVDQDTTKFDSPWYAESSS
NIKFHNEHAGGMRQQFDKPTGSKRKKME*

BS07133.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Mfap1-PA 478 CG1017-PA 1..478 1..478 2449 100 Plus
CG2839-PA 826 CG2839-PA 419..748 23..378 260 25.1 Plus
CG2839-PA 826 CG2839-PA 280..570 44..356 250 24.8 Plus
CG2839-PA 826 CG2839-PA 266..574 23..359 248 23.7 Plus
CG2839-PA 826 CG2839-PA 268..558 66..360 231 26.3 Plus
CG2839-PA 826 CG2839-PA 331..639 43..382 229 24.9 Plus
CG2839-PA 826 CG2839-PA 290..675 26..382 226 23.6 Plus
CG2839-PA 826 CG2839-PA 466..750 28..299 220 25.2 Plus
rudhira-PE 2075 CG43154-PE 1226..1632 3..378 216 22.1 Plus
rudhira-PC 2075 CG43154-PC 1226..1632 3..378 216 22.1 Plus
Strn-Mlck-PT 7905 CG44162-PT 3776..4155 32..409 208 23.1 Plus
CG2839-PA 826 CG2839-PA 264..540 95..359 204 25.4 Plus
CG2839-PA 826 CG2839-PA 499..793 43..332 203 23.7 Plus
CG2839-PA 826 CG2839-PA 269..513 126..372 187 26 Plus
rudhira-PE 2075 CG43154-PE 1382..1657 51..340 185 23.2 Plus
rudhira-PC 2075 CG43154-PC 1382..1657 51..340 185 23.2 Plus
CG2839-PA 826 CG2839-PA 510..749 25..258 171 23.3 Plus