Clone BS07134 Report

Search the DGRC for BS07134

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptS-Lap8-RA
Protein status:BS07134.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07134.3prime Sequence

884 bp (832 high quality bases) assembled on 2006-01-06

> BS07134.3prime
ATGGTCTAGAAAGCTTTTATTTGCAGGCCATCTGGTAGAGGAACTGGATG
ATCGATCGAGTCGGACGACCAGTCATGCAATCCTTGAGCAAATACGGAGG
AACTCCGTGCTTAGCCAGCATTCCGGTGCCGTGGGTATCCAGGTGCACCC
AGTCGGAGCAGGGAACCAGTTCGTAAAGGATAGCAGCCGCCAAGCAGGAG
GATGCGTGTCCCTCTCCCGTGCTGCATATATCGTAGGATGCACGGGGGGC
CACTAATTTGCGGAAGTACCTCCATAGGGGCATGCGCCACAAACGATCGC
CGGTGAGAGCTCCGGCCTTTTGGAAATTCTTCCAGAGGAAAGAGTTATTG
GTCCACAGTCCGGTGGCCGAGGCTCCCAGTCCTTTGCGAATGCCGCTGGC
CATCGAGCCCACTTCCACCACCAACTTGGGCTTGAAAGTCGATTGAGCGT
AGAGCAGGGGATCGGCCAGGAGGACAGTGCCGGCCAGTGAGATATCCTTG
ATGCGCATGGTCTTGCCGTTTAGTAGTGTGACCACATCGCCCGGCTTGGT
GGCCATTCCCGATGGCATATTTTCACACAGGGGTAATACGGCGGACACAT
TAATAGGCAACGATAGTGCGGCTGCCGCTCGAATGGCGGCCACGCAGACT
GCAGCTCCGGAAACTGCTCCGCGATACTCGTCCATTCCCCTTTTCGGATG
CAGGCATAGGCCACCGCTGTTGAATGTCAGTCCCTTGCCGAGCATAAGAA
TGGGTCGCTCCTCCGGTGAGGTGCCGCAATAGCTAACCTCTAGGATAATG
GGTGGCTCGCACGAGCCCTTGGCCACCATGAGGAAGGAGTTGAGATTCTG
AGTCTCAATCAATCCATTGAACGCACTTCGACTG

BS07134.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4439-PA 1605 CG4439-RA 762..1605 860..17 4220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap8-RA 2055 CG4439-RA 954..1822 884..17 4320 99.9 Minus
S-Lap5-RA 2074 CG18369-RA 957..1297 846..506 330 73.8 Minus
S-Lap3-RD 2640 CG32063-RD 944..1259 846..531 245 72.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16492132..16493000 884..17 4295 99.9 Minus
2R 25286936 2R 16535943..16536294 848..497 365 73.6 Minus
2R 25286936 2R 13597633..13597973 846..506 310 72.7 Minus
3L 28110227 3L 10467278..10467593 846..531 230 71.5 Minus
Blast to na_te.dros performed on 2015-02-11 10:00:44 has no hits.

BS07134.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:13 Download gff for BS07134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4439-PA 737..1605 17..884 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:55 Download gff for BS07134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4439-PA 737..1605 17..884 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:01:03 Download gff for BS07134.3prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap8-RA 954..1829 8..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:18:14 Download gff for BS07134.3prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap8-RA 954..1829 8..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:18:14 Download gff for BS07134.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16492132..16493007 8..884 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:01:03 Download gff for BS07134.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12379637..12380512 8..884 99   Minus

BS07134.5prime Sequence

897 bp (815 high quality bases) assembled on 2006-01-06

> BS07134.5prime
GAAGTTATCAGTCGACATGACTCGATCGCAGATGATCTCCAGCCTGCGCC
GTTCTACACTGGGATTATTCAGGTGCCACAAGGCGCTCATTTTTGCCAGA
ATTCCAGCTTTTCAGCAGGTGAGATGCAAGAGTGAGGATGGCAGCTGCAA
CACCTGCAACTTGCAGGGAGTAGTGGTTGGCCTGTATGCCAAGGATGGTG
ATAAGGGGCTCAAGTTGTCCCCAGGTGGCGAAAAGTTCGACGACCGTGTT
GGCGGCAAGATCACGGAACTAATCAAGGAATCTGGACTCAATGGGGAGCT
CGGAGTGGGTCGACTATATCAGAATATCGATAAGGAGTACTGGGCCGTGG
CGGTTGTGGGCCTGGGCAAGGAAGGAGCTGGCTTCAATGCCGAGGAAGTC
ATCGACGAGGGCATGGAGAACGTGAGGGTGTGCGCCGCGGTGGGTGCCCG
AGCACTTCAGCTGCAGGGCTGCACCACCTGCCATGTGGATGGCATGGAGT
ATCCGGAGCAGGCTGCCGAAGGCGCCGCCATGGCCGTGTGGCGTTACAAT
GTGAACAAGCGCAAGAAGAACCGCATTGCCATACCGAAACTGGAGCTGTA
CGGATCCACAGATCAGGATGCCTGGACAAGGGGGCTGTTCAAGGCCGAAT
CACAGAATTTGGCCCGTCGTTTGTCGGACACGCCCGCCAACCAGATGACG
CCATCCATTTTCGCCCAAGCCACCGTGGATGCCTTGTGTCCCTGTGGTGT
TTCAGTCGAAGTGCGTTCAATGGATTGGATTGAGACTCAGAATCTCAACT
CCTTCCTCATGGTGGCCAAGGGCTCGTGCGAGCCACCCATTATCCTAGAG
GTTAGCTATTGCGGCACCTCACCGGAGGAGCGACCCATTCTTATGCT

BS07134.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4439-PA 1605 CG4439-RA 1..881 17..897 4405 100 Plus
CG4750-PA 1581 CG4750-RA 592..695 635..738 170 86.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap8-RA 2055 CG4439-RA 218..1098 17..897 4405 100 Plus
loopin-1-RC 2078 CG4750-RC 591..1036 446..891 700 77.4 Plus
loopin-1-RA 2022 CG4750-RA 657..1102 446..891 700 77.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16491495..16492276 116..897 3910 100 Plus
2R 25286936 2R 16535635..16536044 482..891 685 77.8 Plus
2R 25286936 2R 13597183..13597732 342..891 620 74.2 Plus
2R 25286936 2R 16491317..16491420 17..120 520 100 Plus
3L 28110227 3L 10466968..10467362 482..876 250 70.9 Plus
Blast to na_te.dros performed on 2015-02-12 04:25:19 has no hits.

BS07134.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:14 Download gff for BS07134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4439-PA 1..881 17..897 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:57 Download gff for BS07134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4439-PA 1..881 17..897 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:34 Download gff for BS07134.5prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap8-RA 218..1098 17..897 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:30 Download gff for BS07134.5prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap8-RA 218..1098 17..897 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:30 Download gff for BS07134.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16491317..16491418 17..118 100 -> Plus
2R 16491498..16492276 119..897 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:34 Download gff for BS07134.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12378822..12378923 17..118 100 -> Plus
arm_2R 12379003..12379781 119..897 100   Plus

BS07134.complete Sequence

1637 bp (1637 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635739

> BS07134.complete
GAAGTTATCAGTCGACATGACTCGATCGCAGATGATCTCCAGCCTGCGCC
GTTCTACACTGGGATTATTCAGGTGCCACAAGGCGCTCATTTTTGCCAGA
ATTCCAGCTTTTCAGCAGGTGAGATGCAAGAGTGAGGATGGCAGCTGCAA
CACCTGCAACTTGCAGGGAGTAGTGGTTGGCCTGTATGCCAAGGATGGTG
ATAAGGGGCTCAAGTTGTCCCCAGGTGGCGAAAAGTTCGACGACCGTGTT
GGCGGCAAGATCACGGAACTAATCAAGGAATCTGGACTCAATGGGGAGCT
CGGAGTGGGTCGACTATATCAGAATATCGATAAGGAGTACTGGGCCGTGG
CGGTTGTGGGCCTGGGCAAGGAAGGAGCTGGCTTCAATGCCGAGGAAGTC
ATCGACGAGGGCATGGAGAACGTGAGGGTGTGCGCCGCGGTGGGTGCCCG
AGCACTTCAGCTGCAGGGCTGCACCACCTGCCATGTGGATGGCATGGAGT
ATCCGGAGCAGGCTGCCGAAGGCGCCGCCATGGCCGTGTGGCGTTACAAT
GTGAACAAGCGCAAGAAGAACCGCATTGCCATACCGAAACTGGAGCTGTA
CGGATCCACAGATCAGGATGCCTGGACAAGGGGGCTGTTCAAGGCCGAAT
CACAGAATTTGGCCCGTCGTTTGTCGGACACGCCCGCCAACCAGATGACG
CCATCCATTTTCGCCCAAGCCACCGTGGATGCCTTGTGTCCCTGTGGTGT
TTCAGTCGAAGTGCGTTCAATGGATTGGATTGAGACTCAGAATCTCAACT
CCTTCCTCATGGTGGCCAAGGGCTCGTGCGAGCCACCCATTATCCTAGAG
GTTAGCTATTGCGGCACCTCACCGGAGGAGCGACCCATTCTTATGCTCGG
CAAGGGACTGACATTCAACAGCGGTGGCCTATGCCTGCATCCGAAAAGGG
GAATGGACGAGTATCGCGGAGCAGTTTCCGGAGCTGCAGTCTGCGTGGCC
GCCATTCGAGCGGCAGCCGCACTATCGTTGCCTATTAATGTGTCCGCCGT
ATTACCCCTGTGTGAAAATATGCCATCGGGAATGGCCACCAAGCCGGGCG
ATGTGGTCACACTACTAAACGGCAAGACCATGCGCATCAAGGATATCTCA
CTGGCCGGCACTGTCCTCCTGGCCGATCCCCTGCTCTACGCTCAATCGAC
TTTCAAGCCCAAGTTGGTGGTGGAAGTGGGCTCGATGGCCAGCGGCATTC
GCAAAGGACTGGGAGCCTCGGCCACCGGACTGTGGACCAATAACTCTTTC
CTCTGGAAGAATTTCCAAAAGGCCGGAGCTCTCACCGGCGATCGTTTGTG
GCGCATGCCCCTATGGAGGTACTTCCGCAAATTAGTGGCCCCCCGTGCAT
CCTACGATATATGCAGCACGGGAGAGGGACACGCATCCTCCTGCTTGGCG
GCTGCTATCCTTTACGAACTGGTTCCCTGCTCCGACTGGGTGCACCTGGA
TACCCACGGCACCGGAATGCTGGCTAAGCACGGAGTTCCTCCGTATTTGC
TCAAGGATTGCATGACTGGTCGTCCGACTCGATCGATCATCCAGTTCCTC
TACCAGATGGCCTGCAAATAAAAGCTTTCTAGACCAT

BS07134.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap8-RA 1605 CG4439-PA 1..1605 17..1621 8025 100 Plus
loopin-1-RC 1581 CG4750-PC 439..1098 482..1141 885 75.6 Plus
loopin-1-RA 1581 CG4750-PA 439..1098 482..1141 885 75.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap8-RA 2055 CG4439-RA 218..1822 17..1621 8025 100 Plus
loopin-1-RC 2078 CG4750-RC 627..1286 482..1141 885 75.6 Plus
loopin-1-RA 2022 CG4750-RA 693..1352 482..1141 885 75.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16491495..16493000 116..1621 7530 100 Plus
2R 25286936 2R 16535635..16536294 482..1141 885 75.6 Plus
2R 25286936 2R 13597183..13597973 342..1132 760 73.1 Plus
2R 25286936 2R 16491317..16491420 17..120 520 100 Plus
3L 28110227 3L 10466968..10467593 482..1107 295 69.8 Plus
3L 28110227 3L 10491599..10492034 484..919 215 70 Plus
Blast to na_te.dros performed on 2014-11-27 13:32:09 has no hits.

BS07134.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:44 Download gff for BS07134.complete
Subject Subject Range Query Range Percent Splice Strand
CG4439-RA 1..1605 17..1621 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:15 Download gff for BS07134.complete
Subject Subject Range Query Range Percent Splice Strand
CG4439-RA 176..1787 17..1630 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:30 Download gff for BS07134.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap8-RA 218..1820 17..1619 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:44 Download gff for BS07134.complete
Subject Subject Range Query Range Percent Splice Strand
CG4439-RA 176..1787 17..1630 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:43 Download gff for BS07134.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap8-RA 218..1820 17..1619 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:43 Download gff for BS07134.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16491317..16491418 17..118 100 -> Plus
2R 16491498..16492998 119..1619 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:30 Download gff for BS07134.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12378822..12378923 17..118 100 -> Plus
arm_2R 12379003..12380503 119..1619 100   Plus

BS07134.pep Sequence

Translation from 16 to 1620

> BS07134.pep
MTRSQMISSLRRSTLGLFRCHKALIFARIPAFQQVRCKSEDGSCNTCNLQ
GVVVGLYAKDGDKGLKLSPGGEKFDDRVGGKITELIKESGLNGELGVGRL
YQNIDKEYWAVAVVGLGKEGAGFNAEEVIDEGMENVRVCAAVGARALQLQ
GCTTCHVDGMEYPEQAAEGAAMAVWRYNVNKRKKNRIAIPKLELYGSTDQ
DAWTRGLFKAESQNLARRLSDTPANQMTPSIFAQATVDALCPCGVSVEVR
SMDWIETQNLNSFLMVAKGSCEPPIILEVSYCGTSPEERPILMLGKGLTF
NSGGLCLHPKRGMDEYRGAVSGAAVCVAAIRAAAALSLPINVSAVLPLCE
NMPSGMATKPGDVVTLLNGKTMRIKDISLAGTVLLADPLLYAQSTFKPKL
VVEVGSMASGIRKGLGASATGLWTNNSFLWKNFQKAGALTGDRLWRMPLW
RYFRKLVAPRASYDICSTGEGHASSCLAAAILYELVPCSDWVHLDTHGTG
MLAKHGVPPYLLKDCMTGRPTRSIIQFLYQMACK*

BS07134.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap8-PA 534 CG4439-PA 1..534 1..534 2801 100 Plus
S-Lap5-PA 549 CG18369-PA 41..545 30..533 1883 69.1 Plus
loopin-1-PC 526 CG4750-PC 41..524 50..533 1790 67.4 Plus
loopin-1-PA 526 CG4750-PA 41..524 50..533 1790 67.4 Plus
S-Lap3-PD 535 CG32063-PD 47..530 50..533 1742 63 Plus