Clone Sequence Records
BS07134.3prime Sequence
884 bp (832 high quality bases) assembled on 2006-01-06
> BS07134.3prime
ATGGTCTAGAAAGCTTTTATTTGCAGGCCATCTGGTAGAGGAACTGGATG
ATCGATCGAGTCGGACGACCAGTCATGCAATCCTTGAGCAAATACGGAGG
AACTCCGTGCTTAGCCAGCATTCCGGTGCCGTGGGTATCCAGGTGCACCC
AGTCGGAGCAGGGAACCAGTTCGTAAAGGATAGCAGCCGCCAAGCAGGAG
GATGCGTGTCCCTCTCCCGTGCTGCATATATCGTAGGATGCACGGGGGGC
CACTAATTTGCGGAAGTACCTCCATAGGGGCATGCGCCACAAACGATCGC
CGGTGAGAGCTCCGGCCTTTTGGAAATTCTTCCAGAGGAAAGAGTTATTG
GTCCACAGTCCGGTGGCCGAGGCTCCCAGTCCTTTGCGAATGCCGCTGGC
CATCGAGCCCACTTCCACCACCAACTTGGGCTTGAAAGTCGATTGAGCGT
AGAGCAGGGGATCGGCCAGGAGGACAGTGCCGGCCAGTGAGATATCCTTG
ATGCGCATGGTCTTGCCGTTTAGTAGTGTGACCACATCGCCCGGCTTGGT
GGCCATTCCCGATGGCATATTTTCACACAGGGGTAATACGGCGGACACAT
TAATAGGCAACGATAGTGCGGCTGCCGCTCGAATGGCGGCCACGCAGACT
GCAGCTCCGGAAACTGCTCCGCGATACTCGTCCATTCCCCTTTTCGGATG
CAGGCATAGGCCACCGCTGTTGAATGTCAGTCCCTTGCCGAGCATAAGAA
TGGGTCGCTCCTCCGGTGAGGTGCCGCAATAGCTAACCTCTAGGATAATG
GGTGGCTCGCACGAGCCCTTGGCCACCATGAGGAAGGAGTTGAGATTCTG
AGTCTCAATCAATCCATTGAACGCACTTCGACTG
BS07134.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4439-PA | 1605 | CG4439-RA | 762..1605 | 860..17 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap8-RA | 2055 | CG4439-RA | 954..1822 | 884..17 | 4320 | 99.9 | Minus |
S-Lap5-RA | 2074 | CG18369-RA | 957..1297 | 846..506 | 330 | 73.8 | Minus |
S-Lap3-RD | 2640 | CG32063-RD | 944..1259 | 846..531 | 245 | 72.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16492132..16493000 | 884..17 | 4295 | 99.9 | Minus |
2R | 25286936 | 2R | 16535943..16536294 | 848..497 | 365 | 73.6 | Minus |
2R | 25286936 | 2R | 13597633..13597973 | 846..506 | 310 | 72.7 | Minus |
3L | 28110227 | 3L | 10467278..10467593 | 846..531 | 230 | 71.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:00:44 has no hits.
BS07134.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:13 Download gff for
BS07134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4439-PA | 737..1605 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:55 Download gff for
BS07134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4439-PA | 737..1605 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:01:03 Download gff for
BS07134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap8-RA | 954..1829 | 8..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:18:14 Download gff for
BS07134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap8-RA | 954..1829 | 8..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:18:14 Download gff for
BS07134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16492132..16493007 | 8..884 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:01:03 Download gff for
BS07134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12379637..12380512 | 8..884 | 99 | | Minus |
BS07134.5prime Sequence
897 bp (815 high quality bases) assembled on 2006-01-06
> BS07134.5prime
GAAGTTATCAGTCGACATGACTCGATCGCAGATGATCTCCAGCCTGCGCC
GTTCTACACTGGGATTATTCAGGTGCCACAAGGCGCTCATTTTTGCCAGA
ATTCCAGCTTTTCAGCAGGTGAGATGCAAGAGTGAGGATGGCAGCTGCAA
CACCTGCAACTTGCAGGGAGTAGTGGTTGGCCTGTATGCCAAGGATGGTG
ATAAGGGGCTCAAGTTGTCCCCAGGTGGCGAAAAGTTCGACGACCGTGTT
GGCGGCAAGATCACGGAACTAATCAAGGAATCTGGACTCAATGGGGAGCT
CGGAGTGGGTCGACTATATCAGAATATCGATAAGGAGTACTGGGCCGTGG
CGGTTGTGGGCCTGGGCAAGGAAGGAGCTGGCTTCAATGCCGAGGAAGTC
ATCGACGAGGGCATGGAGAACGTGAGGGTGTGCGCCGCGGTGGGTGCCCG
AGCACTTCAGCTGCAGGGCTGCACCACCTGCCATGTGGATGGCATGGAGT
ATCCGGAGCAGGCTGCCGAAGGCGCCGCCATGGCCGTGTGGCGTTACAAT
GTGAACAAGCGCAAGAAGAACCGCATTGCCATACCGAAACTGGAGCTGTA
CGGATCCACAGATCAGGATGCCTGGACAAGGGGGCTGTTCAAGGCCGAAT
CACAGAATTTGGCCCGTCGTTTGTCGGACACGCCCGCCAACCAGATGACG
CCATCCATTTTCGCCCAAGCCACCGTGGATGCCTTGTGTCCCTGTGGTGT
TTCAGTCGAAGTGCGTTCAATGGATTGGATTGAGACTCAGAATCTCAACT
CCTTCCTCATGGTGGCCAAGGGCTCGTGCGAGCCACCCATTATCCTAGAG
GTTAGCTATTGCGGCACCTCACCGGAGGAGCGACCCATTCTTATGCT
BS07134.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4439-PA | 1605 | CG4439-RA | 1..881 | 17..897 | 4405 | 100 | Plus |
CG4750-PA | 1581 | CG4750-RA | 592..695 | 635..738 | 170 | 86.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap8-RA | 2055 | CG4439-RA | 218..1098 | 17..897 | 4405 | 100 | Plus |
loopin-1-RC | 2078 | CG4750-RC | 591..1036 | 446..891 | 700 | 77.4 | Plus |
loopin-1-RA | 2022 | CG4750-RA | 657..1102 | 446..891 | 700 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16491495..16492276 | 116..897 | 3910 | 100 | Plus |
2R | 25286936 | 2R | 16535635..16536044 | 482..891 | 685 | 77.8 | Plus |
2R | 25286936 | 2R | 13597183..13597732 | 342..891 | 620 | 74.2 | Plus |
2R | 25286936 | 2R | 16491317..16491420 | 17..120 | 520 | 100 | Plus |
3L | 28110227 | 3L | 10466968..10467362 | 482..876 | 250 | 70.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:25:19 has no hits.
BS07134.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:14 Download gff for
BS07134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4439-PA | 1..881 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:57 Download gff for
BS07134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4439-PA | 1..881 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:34 Download gff for
BS07134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap8-RA | 218..1098 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:30 Download gff for
BS07134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap8-RA | 218..1098 | 17..897 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:30 Download gff for
BS07134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16491317..16491418 | 17..118 | 100 | -> | Plus |
2R | 16491498..16492276 | 119..897 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:34 Download gff for
BS07134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12378822..12378923 | 17..118 | 100 | -> | Plus |
arm_2R | 12379003..12379781 | 119..897 | 100 | | Plus |
BS07134.complete Sequence
1637 bp (1637 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635739
> BS07134.complete
GAAGTTATCAGTCGACATGACTCGATCGCAGATGATCTCCAGCCTGCGCC
GTTCTACACTGGGATTATTCAGGTGCCACAAGGCGCTCATTTTTGCCAGA
ATTCCAGCTTTTCAGCAGGTGAGATGCAAGAGTGAGGATGGCAGCTGCAA
CACCTGCAACTTGCAGGGAGTAGTGGTTGGCCTGTATGCCAAGGATGGTG
ATAAGGGGCTCAAGTTGTCCCCAGGTGGCGAAAAGTTCGACGACCGTGTT
GGCGGCAAGATCACGGAACTAATCAAGGAATCTGGACTCAATGGGGAGCT
CGGAGTGGGTCGACTATATCAGAATATCGATAAGGAGTACTGGGCCGTGG
CGGTTGTGGGCCTGGGCAAGGAAGGAGCTGGCTTCAATGCCGAGGAAGTC
ATCGACGAGGGCATGGAGAACGTGAGGGTGTGCGCCGCGGTGGGTGCCCG
AGCACTTCAGCTGCAGGGCTGCACCACCTGCCATGTGGATGGCATGGAGT
ATCCGGAGCAGGCTGCCGAAGGCGCCGCCATGGCCGTGTGGCGTTACAAT
GTGAACAAGCGCAAGAAGAACCGCATTGCCATACCGAAACTGGAGCTGTA
CGGATCCACAGATCAGGATGCCTGGACAAGGGGGCTGTTCAAGGCCGAAT
CACAGAATTTGGCCCGTCGTTTGTCGGACACGCCCGCCAACCAGATGACG
CCATCCATTTTCGCCCAAGCCACCGTGGATGCCTTGTGTCCCTGTGGTGT
TTCAGTCGAAGTGCGTTCAATGGATTGGATTGAGACTCAGAATCTCAACT
CCTTCCTCATGGTGGCCAAGGGCTCGTGCGAGCCACCCATTATCCTAGAG
GTTAGCTATTGCGGCACCTCACCGGAGGAGCGACCCATTCTTATGCTCGG
CAAGGGACTGACATTCAACAGCGGTGGCCTATGCCTGCATCCGAAAAGGG
GAATGGACGAGTATCGCGGAGCAGTTTCCGGAGCTGCAGTCTGCGTGGCC
GCCATTCGAGCGGCAGCCGCACTATCGTTGCCTATTAATGTGTCCGCCGT
ATTACCCCTGTGTGAAAATATGCCATCGGGAATGGCCACCAAGCCGGGCG
ATGTGGTCACACTACTAAACGGCAAGACCATGCGCATCAAGGATATCTCA
CTGGCCGGCACTGTCCTCCTGGCCGATCCCCTGCTCTACGCTCAATCGAC
TTTCAAGCCCAAGTTGGTGGTGGAAGTGGGCTCGATGGCCAGCGGCATTC
GCAAAGGACTGGGAGCCTCGGCCACCGGACTGTGGACCAATAACTCTTTC
CTCTGGAAGAATTTCCAAAAGGCCGGAGCTCTCACCGGCGATCGTTTGTG
GCGCATGCCCCTATGGAGGTACTTCCGCAAATTAGTGGCCCCCCGTGCAT
CCTACGATATATGCAGCACGGGAGAGGGACACGCATCCTCCTGCTTGGCG
GCTGCTATCCTTTACGAACTGGTTCCCTGCTCCGACTGGGTGCACCTGGA
TACCCACGGCACCGGAATGCTGGCTAAGCACGGAGTTCCTCCGTATTTGC
TCAAGGATTGCATGACTGGTCGTCCGACTCGATCGATCATCCAGTTCCTC
TACCAGATGGCCTGCAAATAAAAGCTTTCTAGACCAT
BS07134.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap8-RA | 1605 | CG4439-PA | 1..1605 | 17..1621 | 8025 | 100 | Plus |
loopin-1-RC | 1581 | CG4750-PC | 439..1098 | 482..1141 | 885 | 75.6 | Plus |
loopin-1-RA | 1581 | CG4750-PA | 439..1098 | 482..1141 | 885 | 75.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap8-RA | 2055 | CG4439-RA | 218..1822 | 17..1621 | 8025 | 100 | Plus |
loopin-1-RC | 2078 | CG4750-RC | 627..1286 | 482..1141 | 885 | 75.6 | Plus |
loopin-1-RA | 2022 | CG4750-RA | 693..1352 | 482..1141 | 885 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16491495..16493000 | 116..1621 | 7530 | 100 | Plus |
2R | 25286936 | 2R | 16535635..16536294 | 482..1141 | 885 | 75.6 | Plus |
2R | 25286936 | 2R | 13597183..13597973 | 342..1132 | 760 | 73.1 | Plus |
2R | 25286936 | 2R | 16491317..16491420 | 17..120 | 520 | 100 | Plus |
3L | 28110227 | 3L | 10466968..10467593 | 482..1107 | 295 | 69.8 | Plus |
3L | 28110227 | 3L | 10491599..10492034 | 484..919 | 215 | 70 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:32:09 has no hits.
BS07134.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:44 Download gff for
BS07134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4439-RA | 1..1605 | 17..1621 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:15 Download gff for
BS07134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4439-RA | 176..1787 | 17..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:30 Download gff for
BS07134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap8-RA | 218..1820 | 17..1619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:44 Download gff for
BS07134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4439-RA | 176..1787 | 17..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:43 Download gff for
BS07134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap8-RA | 218..1820 | 17..1619 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:43 Download gff for
BS07134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16491317..16491418 | 17..118 | 100 | -> | Plus |
2R | 16491498..16492998 | 119..1619 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:30 Download gff for
BS07134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12378822..12378923 | 17..118 | 100 | -> | Plus |
arm_2R | 12379003..12380503 | 119..1619 | 100 | | Plus |
BS07134.pep Sequence
Translation from 16 to 1620
> BS07134.pep
MTRSQMISSLRRSTLGLFRCHKALIFARIPAFQQVRCKSEDGSCNTCNLQ
GVVVGLYAKDGDKGLKLSPGGEKFDDRVGGKITELIKESGLNGELGVGRL
YQNIDKEYWAVAVVGLGKEGAGFNAEEVIDEGMENVRVCAAVGARALQLQ
GCTTCHVDGMEYPEQAAEGAAMAVWRYNVNKRKKNRIAIPKLELYGSTDQ
DAWTRGLFKAESQNLARRLSDTPANQMTPSIFAQATVDALCPCGVSVEVR
SMDWIETQNLNSFLMVAKGSCEPPIILEVSYCGTSPEERPILMLGKGLTF
NSGGLCLHPKRGMDEYRGAVSGAAVCVAAIRAAAALSLPINVSAVLPLCE
NMPSGMATKPGDVVTLLNGKTMRIKDISLAGTVLLADPLLYAQSTFKPKL
VVEVGSMASGIRKGLGASATGLWTNNSFLWKNFQKAGALTGDRLWRMPLW
RYFRKLVAPRASYDICSTGEGHASSCLAAAILYELVPCSDWVHLDTHGTG
MLAKHGVPPYLLKDCMTGRPTRSIIQFLYQMACK*
BS07134.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap8-PA | 534 | CG4439-PA | 1..534 | 1..534 | 2801 | 100 | Plus |
S-Lap5-PA | 549 | CG18369-PA | 41..545 | 30..533 | 1883 | 69.1 | Plus |
loopin-1-PC | 526 | CG4750-PC | 41..524 | 50..533 | 1790 | 67.4 | Plus |
loopin-1-PA | 526 | CG4750-PA | 41..524 | 50..533 | 1790 | 67.4 | Plus |
S-Lap3-PD | 535 | CG32063-PD | 47..530 | 50..533 | 1742 | 63 | Plus |