Clone Sequence Records
BS07135.3prime Sequence
897 bp (824 high quality bases) assembled on 2006-01-06
> BS07135.3prime
ATGGTCTAGAAAGCTTCTAGTTGGCCGCCTTCTTCGACTTCTTCATTCGC
TCGCCCTCATTCTCGTTCTCATCTAATTTGGCGCTCTCCGTGCTGCTGGA
CTCGGCATCGTACTCGAGCTCGGGATCTGGAACCTCGGCGTAGTGCACGT
GACCCACCATGGTGGCTCCGGCCAACACTCCGTCCTTGAACTCCTCGGGA
CCGCCCAGCTGGGAGGCGTGGGTGCCATCGCCGTACTTCTCGAGGGTGCG
ACGCACCAGCTCCTTGGATGGCTGCTTCATGTTCCAGGCCCACCCCAACT
TGTGGAACGCATCCAGCACCATGGTGGTGAAGTTCACGGTGTAGTTGCCC
AGCTCAGCTGCTTTGTAGTCCCAGGGGAATACGTGGTGGTAGTTGTGCCA
TCCCTCGCCCATGGCCAGCAGGGACACATAGATGTTCTCGCTGGGCATGA
TCCGCTTATCGTATGGACGGGATCCCCACAGATGGGCGGCACTGTTCACA
GACCAAGTGAAGTTCAAGCTGCTCACGTAGCGGAAGAGGCACTGCTGGAT
AAAGGCCAGGGTCCAGGTCTCGCCCCAGCAGTAGACTGGGATCACGGTGG
GCAAGATGAAGCAGAAGAAGGTCTTCAGGGGGATGAAGTACTTCTGGTGG
AAGCGGACCACGGGATCAGCCAGAATGTCGCTCATGTCGATCTGGCGACC
ACGACGAAGTACCTCCGGATGCTTCAGCATCATTAGCCAGCCCACGTGGG
AGAAGAAGAATCCCCTGTTAGCATTGTGGGGATCCGCATCCGTCTCCGAG
TATTTGTGATGAACTCGATGGTCGCGAACCCAGTCGTACAGGGTGTTCTG
TCCAGCCACGCAGTAGCAGACCATCAGGATGGATCGCAGCACGGTGT
BS07135.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9747-PA | 1386 | CG9747-RA | 506..1386 | 897..17 | 4405 | 100 | Minus |
CG9743-PA | 1263 | CG9743-RA | 955..1016 | 424..363 | 235 | 95.1 | Minus |
CG8630-PA | 1227 | CG8630-RA | 856..925 | 409..340 | 225 | 92.8 | Minus |
CG5887-PA | 1152 | desat1-RA | 883..926 | 406..363 | 145 | 93.1 | Minus |
CG5887-PC | 1152 | desat1-RC | 883..926 | 406..363 | 145 | 93.1 | Minus |
CG5887-PE | 1152 | desat1-RE | 883..926 | 406..363 | 145 | 93.1 | Minus |
CG5887-PB | 1152 | desat1-RB | 883..926 | 406..363 | 145 | 93.1 | Minus |
CG5887-PD | 1152 | desat1-RD | 883..926 | 406..363 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:00:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9747-RB | 2318 | CG9747-RB | 1017..1897 | 897..17 | 4405 | 100 | Minus |
CG9747-RA | 2138 | CG9747-RA | 837..1717 | 897..17 | 4405 | 100 | Minus |
CG9743-RA | 1733 | CG9743-RA | 1144..1249 | 428..323 | 305 | 85.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30185844..30186282 | 17..455 | 2195 | 100 | Plus |
3R | 32079331 | 3R | 30186429..30186824 | 455..850 | 1980 | 100 | Plus |
3R | 32079331 | 3R | 30196909..30197014 | 323..428 | 305 | 85.8 | Plus |
3R | 32079331 | 3R | 13283516..13283594 | 418..340 | 290 | 91.1 | Minus |
3R | 32079331 | 3R | 12436889..12436977 | 823..735 | 250 | 85.4 | Minus |
3R | 32079331 | 3R | 12446124..12446221 | 832..735 | 250 | 83.7 | Minus |
3R | 32079331 | 3R | 30187389..30187438 | 848..897 | 250 | 100 | Plus |
3R | 32079331 | 3R | 12446639..12446755 | 439..323 | 210 | 78.6 | Minus |
3R | 32079331 | 3R | 30197376..30197452 | 735..811 | 205 | 84.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:00:39 has no hits.
BS07135.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:16 Download gff for
BS07135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9747-PA | 506..1386 | 17..897 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:58 Download gff for
BS07135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9747-PA | 506..1386 | 17..897 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:01:00 Download gff for
BS07135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9747-RA | 844..1730 | 12..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:18:00 Download gff for
BS07135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9747-RA | 837..1723 | 12..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:18:00 Download gff for
BS07135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30185838..30186282 | 12..455 | 99 | <- | Plus |
3R | 30186430..30186821 | 456..847 | 100 | <- | Plus |
3R | 30187389..30187438 | 848..897 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:01:00 Download gff for
BS07135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26011560..26012004 | 12..455 | 99 | <- | Plus |
arm_3R | 26012152..26012543 | 456..847 | 100 | <- | Plus |
arm_3R | 26013111..26013160 | 848..897 | 100 | | Plus |
BS07135.5prime Sequence
939 bp (841 high quality bases) assembled on 2006-01-06
> BS07135.5prime
GAAGTTATCAGTCGACATGGGTCACCTGTCCACCTCGGAGCGAGTGTGCA
GCAAGACGCCAGCCATCGCGACGGACTCCAGTCCTCCGCTTGTGGCCAGG
AGGTCGAAGTTCCCCAATGGAGACGCCCAGCAGCAGGTGCGCAGGGGAGA
GGACTCCTCGCCCGAGCTGCCGCCCCGTGGCAAGCTCCAACTGCCCCCGA
AGCGGGAGGAGCTGCCCAGGTCGGTGGTGCCCAAGGAGATCGCCAATCAT
GTGCCCAAGGATGCAATTGATCTCGAGGAGTACACCCGCACCTTCGTCGG
AGATCGAGTGTTGGGTTGGCAGTTTCAGGCTCCGCTCAAGTGGGACAAAG
TCATCCAGATCTCGCTCCTGCACATCGTGGCCGGAATCTGCCTGCTGACG
TATCCGCTGCGGGAGCTCAATCCATACACCACCATCTGGTCCTTCTTCGT
TGGCGGCGTGGCCGGATTCGGAGTTACGGCCGGAGCCCATAGGTTCTGGA
CCCACAAGAGCTACAAGGCCAACACCGTGCTGCGATCCATCCTGATGGTC
TGCTACTGCGTGGCTGGACAGAACACCCTGTACGACTGGGTTCGCGACCA
TCGAGTTCATCACAAATACTCGGAGACGGATGCGGATCCCCACAATGCTA
ACAGGGGATTCTTCTTCTCCCACGTGGGCTGGCTAATGATGCTGAAGCAT
CCGGAGGTACTTCGTCGTGGTCGCCAGATCGACATGAGCGACATTCTGGC
TGATCCCGTGGTCCGCTTCCACCAGAAGTACTTCATCCCCCTGAAGACCT
TCTTCTGCTTCATCTTGCCCACCGTGATCCCAGTCTACTGCTGGGGCGAG
ACCTGGACCCTGGCCTTTATCCAGCAGTGCCTCTTCCGCTACGTGAGCAG
CTTGAACTTCACTTGGTCTGTGAACAGTGCCCGCCATCT
BS07135.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9747-PA | 1386 | CG9747-RA | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:17:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9747-RB | 2318 | CG9747-RB | 512..1434 | 17..939 | 4585 | 99.8 | Plus |
CG9747-RA | 2138 | CG9747-RA | 332..1254 | 17..939 | 4585 | 99.8 | Plus |
Desat1-RD | 1934 | CG5887-RD | 564..685 | 587..708 | 265 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30190318..30190741 | 440..17 | 2120 | 100 | Minus |
3R | 32079331 | 3R | 30186454..30186824 | 939..569 | 1825 | 99.5 | Minus |
3R | 32079331 | 3R | 30187389..30187519 | 571..441 | 655 | 100 | Minus |
3R | 32079331 | 3R | 12436889..12436977 | 596..684 | 250 | 85.4 | Plus |
3R | 32079331 | 3R | 12446124..12446221 | 587..684 | 250 | 83.7 | Plus |
3R | 32079331 | 3R | 30197376..30197452 | 684..608 | 205 | 84.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:17:26 has no hits.
BS07135.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:17 Download gff for
BS07135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9747-PA | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:59 Download gff for
BS07135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9747-PA | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:58:07 Download gff for
BS07135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9747-RA | 339..1261 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:18:07 Download gff for
BS07135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9747-RA | 332..1254 | 17..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:18:07 Download gff for
BS07135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30186454..30186821 | 572..939 | 99 | <- | Minus |
3R | 30187389..30187519 | 441..571 | 100 | <- | Minus |
3R | 30190318..30190741 | 17..440 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:58:07 Download gff for
BS07135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26012176..26012543 | 572..939 | 99 | <- | Minus |
arm_3R | 26013111..26013241 | 441..571 | 100 | <- | Minus |
arm_3R | 26016040..26016463 | 17..440 | 100 | | Minus |
BS07135.complete Sequence
1418 bp (1418 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635740
> BS07135.complete
GAAGTTATCAGTCGACATGGGTCACCTGTCCACCTCGGAGCGAGTGTGCA
GCAAGACGCCAGCCATCGCGACGGACTCCAGTCCTCCGCTTGTGGCCAGG
AGGTCGAAGTTCCCCAATGGAGACGCCCAGCAGCAGGTGCGCAGGGGAGA
GGACTCCTCGCCCGAGCTGCCGCCCCGTGGCAAGCTCCAACTGCCCCCGA
AGCGGGAGGAGCTGCCCAGGTCGGTGGTGCCCAAGGAGATCGCCAATCAT
GTGCCCAAGGATGCAATTGATCTCGAGGAGTACACCCGCACCTTCGTCGG
AGATCGAGTGTTGGGTTGGCAGTTTCAGGCTCCGCTCAAGTGGGACAAAG
TCATCCAGATCTCGCTCCTGCACATCGTGGCCGGAATCTGCCTGCTGACG
TATCCGCTGCGGGAGCTCAATCCATACACCACCATCTGGTCCTTCTTCGT
TGGCGGCGTGGCCGGATTCGGAGTTACGGCCGGAGCCCATAGGTTCTGGA
CCCACAAGAGCTACAAGGCCAACACCGTGCTGCGATCCATCCTGATGGTC
TGCTACTGCGTGGCTGGACAGAACACCCTGTACGACTGGGTTCGCGACCA
TCGAGTTCATCACAAATACTCGGAGACGGATGCGGATCCCCACAATGCTA
ACAGGGGATTCTTCTTCTCCCACGTGGGCTGGCTAATGATGCTGAAGCAT
CCGGAGGTACTTCGTCGTGGTCGCCAGATCGACATGAGCGACATTCTGGC
TGATCCCGTGGTCCGCTTCCACCAGAAGTACTTCATCCCCCTGAAGACCT
TCTTCTGCTTCATCTTGCCCACCGTGATCCCAGTCTACTGCTGGGGCGAG
ACCTGGACCCTGGCCTTTATCCAGCAGTGCCTCTTCCGCTACGTGAGCAG
CTTGAACTTCACTTGGTCTGTGAACAGTGCCGCCCATCTGTGGGGATCCC
GTCCATACGATAAGCGGATCATGCCCAGCGAGAACATCTATGTGTCCCTG
CTGGCCATGGGCGAGGGATGGCACAACTACCACCACGTATTCCCCTGGGA
CTACAAAGCAGCTGAGCTGGGCAACTACACCGTGAACTTCACCACCATGG
TGCTGGATGCGTTCCACAAGTTGGGGTGGGCCTGGAACATGAAGCAGCCA
TCCAAGGAGCTGGTGCGTCGCACCCTCGAGAAGTACGGCGATGGCACCCA
CGCCTCCCAGCTGGGCGGTCCCGAGGAGTTCAAGGACGGAGTGTTGGCCG
GAGCCACCATGGTGGGTCACGTGCACTACGCCGAGGTTCCAGATCCCGAG
CTCGAGTACGATGCCGAGTCCAGCAGCACGGAGAGCGCCAAATTAGATGA
GAACGAGAATGAGGGCGAGCGAATGAAGAAGTCGAAGAAGGCGGCCAACT
AGAAGCTTTCTAGACCAT
BS07135.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9747-RB | 1386 | CG9747-PB | 1..1386 | 17..1402 | 6930 | 100 | Plus |
CG9747-RA | 1386 | CG9747-PA | 1..1386 | 17..1402 | 6930 | 100 | Plus |
CG9743-RA | 1263 | CG9743-PA | 951..1056 | 991..1096 | 305 | 85.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9747-RB | 2318 | CG9747-RB | 512..1897 | 17..1402 | 6930 | 100 | Plus |
CG9747-RA | 2138 | CG9747-RA | 332..1717 | 17..1402 | 6930 | 100 | Plus |
CG9743-RA | 1733 | CG9743-RA | 1144..1249 | 991..1096 | 305 | 85.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30185844..30186282 | 1402..964 | 2195 | 100 | Minus |
3R | 32079331 | 3R | 30190318..30190741 | 440..17 | 2120 | 100 | Minus |
3R | 32079331 | 3R | 30186429..30186824 | 964..569 | 1980 | 100 | Minus |
3R | 32079331 | 3R | 30187389..30187519 | 571..441 | 655 | 100 | Minus |
3R | 32079331 | 3R | 30196909..30197014 | 1096..991 | 305 | 85.8 | Minus |
3R | 32079331 | 3R | 13283516..13283594 | 1001..1079 | 290 | 91.1 | Plus |
3R | 32079331 | 3R | 12436889..12436977 | 596..684 | 250 | 85.4 | Plus |
3R | 32079331 | 3R | 12446124..12446221 | 587..684 | 250 | 83.7 | Plus |
3R | 32079331 | 3R | 12446639..12446755 | 980..1096 | 210 | 78.6 | Plus |
3R | 32079331 | 3R | 30197376..30197452 | 684..608 | 205 | 84.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:52:07 has no hits.
BS07135.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:45 Download gff for
BS07135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9747-RA | 1..1386 | 17..1402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:17 Download gff for
BS07135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9747-RA | 337..1728 | 17..1407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:16 Download gff for
BS07135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9747-RA | 339..1724 | 17..1402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:46 Download gff for
BS07135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9747-RA | 337..1728 | 17..1407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:19 Download gff for
BS07135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9747-RA | 332..1717 | 17..1402 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:19 Download gff for
BS07135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30185844..30186282 | 964..1402 | 100 | <- | Minus |
3R | 30186430..30186821 | 572..963 | 100 | <- | Minus |
3R | 30187389..30187519 | 441..571 | 100 | <- | Minus |
3R | 30190318..30190741 | 17..440 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:16 Download gff for
BS07135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26016040..26016463 | 17..440 | 100 | | Minus |
arm_3R | 26011566..26012004 | 964..1402 | 100 | <- | Minus |
arm_3R | 26012152..26012543 | 572..963 | 100 | <- | Minus |
arm_3R | 26013111..26013241 | 441..571 | 100 | <- | Minus |
BS07135.pep Sequence
Translation from 16 to 1401
> BS07135.pep
MGHLSTSERVCSKTPAIATDSSPPLVARRSKFPNGDAQQQVRRGEDSSPE
LPPRGKLQLPPKREELPRSVVPKEIANHVPKDAIDLEEYTRTFVGDRVLG
WQFQAPLKWDKVIQISLLHIVAGICLLTYPLRELNPYTTIWSFFVGGVAG
FGVTAGAHRFWTHKSYKANTVLRSILMVCYCVAGQNTLYDWVRDHRVHHK
YSETDADPHNANRGFFFSHVGWLMMLKHPEVLRRGRQIDMSDILADPVVR
FHQKYFIPLKTFFCFILPTVIPVYCWGETWTLAFIQQCLFRYVSSLNFTW
SVNSAAHLWGSRPYDKRIMPSENIYVSLLAMGEGWHNYHHVFPWDYKAAE
LGNYTVNFTTMVLDAFHKLGWAWNMKQPSKELVRRTLEKYGDGTHASQLG
GPEEFKDGVLAGATMVGHVHYAEVPDPELEYDAESSSTESAKLDENENEG
ERMKKSKKAAN*
BS07135.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9747-PB | 461 | CG9747-PB | 1..461 | 1..461 | 2507 | 100 | Plus |
CG9747-PA | 461 | CG9747-PA | 1..461 | 1..461 | 2507 | 100 | Plus |
Desat1-PD | 383 | CG5887-PD | 70..377 | 107..410 | 887 | 51.8 | Plus |
Desat1-PB | 383 | CG5887-PB | 70..377 | 107..410 | 887 | 51.8 | Plus |
Desat1-PE | 383 | CG5887-PE | 70..377 | 107..410 | 887 | 51.8 | Plus |