Clone BS07135 Report

Search the DGRC for BS07135

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG9747-RA
Protein status:BS07135.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07135.3prime Sequence

897 bp (824 high quality bases) assembled on 2006-01-06

> BS07135.3prime
ATGGTCTAGAAAGCTTCTAGTTGGCCGCCTTCTTCGACTTCTTCATTCGC
TCGCCCTCATTCTCGTTCTCATCTAATTTGGCGCTCTCCGTGCTGCTGGA
CTCGGCATCGTACTCGAGCTCGGGATCTGGAACCTCGGCGTAGTGCACGT
GACCCACCATGGTGGCTCCGGCCAACACTCCGTCCTTGAACTCCTCGGGA
CCGCCCAGCTGGGAGGCGTGGGTGCCATCGCCGTACTTCTCGAGGGTGCG
ACGCACCAGCTCCTTGGATGGCTGCTTCATGTTCCAGGCCCACCCCAACT
TGTGGAACGCATCCAGCACCATGGTGGTGAAGTTCACGGTGTAGTTGCCC
AGCTCAGCTGCTTTGTAGTCCCAGGGGAATACGTGGTGGTAGTTGTGCCA
TCCCTCGCCCATGGCCAGCAGGGACACATAGATGTTCTCGCTGGGCATGA
TCCGCTTATCGTATGGACGGGATCCCCACAGATGGGCGGCACTGTTCACA
GACCAAGTGAAGTTCAAGCTGCTCACGTAGCGGAAGAGGCACTGCTGGAT
AAAGGCCAGGGTCCAGGTCTCGCCCCAGCAGTAGACTGGGATCACGGTGG
GCAAGATGAAGCAGAAGAAGGTCTTCAGGGGGATGAAGTACTTCTGGTGG
AAGCGGACCACGGGATCAGCCAGAATGTCGCTCATGTCGATCTGGCGACC
ACGACGAAGTACCTCCGGATGCTTCAGCATCATTAGCCAGCCCACGTGGG
AGAAGAAGAATCCCCTGTTAGCATTGTGGGGATCCGCATCCGTCTCCGAG
TATTTGTGATGAACTCGATGGTCGCGAACCCAGTCGTACAGGGTGTTCTG
TCCAGCCACGCAGTAGCAGACCATCAGGATGGATCGCAGCACGGTGT

BS07135.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9747-PA 1386 CG9747-RA 506..1386 897..17 4405 100 Minus
CG9743-PA 1263 CG9743-RA 955..1016 424..363 235 95.1 Minus
CG8630-PA 1227 CG8630-RA 856..925 409..340 225 92.8 Minus
CG5887-PA 1152 desat1-RA 883..926 406..363 145 93.1 Minus
CG5887-PC 1152 desat1-RC 883..926 406..363 145 93.1 Minus
CG5887-PE 1152 desat1-RE 883..926 406..363 145 93.1 Minus
CG5887-PB 1152 desat1-RB 883..926 406..363 145 93.1 Minus
CG5887-PD 1152 desat1-RD 883..926 406..363 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9747-RB 2318 CG9747-RB 1017..1897 897..17 4405 100 Minus
CG9747-RA 2138 CG9747-RA 837..1717 897..17 4405 100 Minus
CG9743-RA 1733 CG9743-RA 1144..1249 428..323 305 85.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30185844..30186282 17..455 2195 100 Plus
3R 32079331 3R 30186429..30186824 455..850 1980 100 Plus
3R 32079331 3R 30196909..30197014 323..428 305 85.8 Plus
3R 32079331 3R 13283516..13283594 418..340 290 91.1 Minus
3R 32079331 3R 12436889..12436977 823..735 250 85.4 Minus
3R 32079331 3R 12446124..12446221 832..735 250 83.7 Minus
3R 32079331 3R 30187389..30187438 848..897 250 100 Plus
3R 32079331 3R 12446639..12446755 439..323 210 78.6 Minus
3R 32079331 3R 30197376..30197452 735..811 205 84.4 Plus
Blast to na_te.dros performed on 2015-02-11 10:00:39 has no hits.

BS07135.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:16 Download gff for BS07135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9747-PA 506..1386 17..897 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:58 Download gff for BS07135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9747-PA 506..1386 17..897 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:01:00 Download gff for BS07135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9747-RA 844..1730 12..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:18:00 Download gff for BS07135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9747-RA 837..1723 12..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:18:00 Download gff for BS07135.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30185838..30186282 12..455 99 <- Plus
3R 30186430..30186821 456..847 100 <- Plus
3R 30187389..30187438 848..897 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:01:00 Download gff for BS07135.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26011560..26012004 12..455 99 <- Plus
arm_3R 26012152..26012543 456..847 100 <- Plus
arm_3R 26013111..26013160 848..897 100   Plus

BS07135.5prime Sequence

939 bp (841 high quality bases) assembled on 2006-01-06

> BS07135.5prime
GAAGTTATCAGTCGACATGGGTCACCTGTCCACCTCGGAGCGAGTGTGCA
GCAAGACGCCAGCCATCGCGACGGACTCCAGTCCTCCGCTTGTGGCCAGG
AGGTCGAAGTTCCCCAATGGAGACGCCCAGCAGCAGGTGCGCAGGGGAGA
GGACTCCTCGCCCGAGCTGCCGCCCCGTGGCAAGCTCCAACTGCCCCCGA
AGCGGGAGGAGCTGCCCAGGTCGGTGGTGCCCAAGGAGATCGCCAATCAT
GTGCCCAAGGATGCAATTGATCTCGAGGAGTACACCCGCACCTTCGTCGG
AGATCGAGTGTTGGGTTGGCAGTTTCAGGCTCCGCTCAAGTGGGACAAAG
TCATCCAGATCTCGCTCCTGCACATCGTGGCCGGAATCTGCCTGCTGACG
TATCCGCTGCGGGAGCTCAATCCATACACCACCATCTGGTCCTTCTTCGT
TGGCGGCGTGGCCGGATTCGGAGTTACGGCCGGAGCCCATAGGTTCTGGA
CCCACAAGAGCTACAAGGCCAACACCGTGCTGCGATCCATCCTGATGGTC
TGCTACTGCGTGGCTGGACAGAACACCCTGTACGACTGGGTTCGCGACCA
TCGAGTTCATCACAAATACTCGGAGACGGATGCGGATCCCCACAATGCTA
ACAGGGGATTCTTCTTCTCCCACGTGGGCTGGCTAATGATGCTGAAGCAT
CCGGAGGTACTTCGTCGTGGTCGCCAGATCGACATGAGCGACATTCTGGC
TGATCCCGTGGTCCGCTTCCACCAGAAGTACTTCATCCCCCTGAAGACCT
TCTTCTGCTTCATCTTGCCCACCGTGATCCCAGTCTACTGCTGGGGCGAG
ACCTGGACCCTGGCCTTTATCCAGCAGTGCCTCTTCCGCTACGTGAGCAG
CTTGAACTTCACTTGGTCTGTGAACAGTGCCCGCCATCT

BS07135.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9747-PA 1386 CG9747-RA 1..915 17..931 4575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9747-RB 2318 CG9747-RB 512..1434 17..939 4585 99.8 Plus
CG9747-RA 2138 CG9747-RA 332..1254 17..939 4585 99.8 Plus
Desat1-RD 1934 CG5887-RD 564..685 587..708 265 82.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30190318..30190741 440..17 2120 100 Minus
3R 32079331 3R 30186454..30186824 939..569 1825 99.5 Minus
3R 32079331 3R 30187389..30187519 571..441 655 100 Minus
3R 32079331 3R 12436889..12436977 596..684 250 85.4 Plus
3R 32079331 3R 12446124..12446221 587..684 250 83.7 Plus
3R 32079331 3R 30197376..30197452 684..608 205 84.4 Minus
Blast to na_te.dros performed on 2015-02-13 08:17:26 has no hits.

BS07135.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:17 Download gff for BS07135.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9747-PA 1..923 17..939 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:49:59 Download gff for BS07135.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9747-PA 1..923 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:58:07 Download gff for BS07135.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9747-RA 339..1261 17..939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:18:07 Download gff for BS07135.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9747-RA 332..1254 17..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:18:07 Download gff for BS07135.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30186454..30186821 572..939 99 <- Minus
3R 30187389..30187519 441..571 100 <- Minus
3R 30190318..30190741 17..440 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:58:07 Download gff for BS07135.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26012176..26012543 572..939 99 <- Minus
arm_3R 26013111..26013241 441..571 100 <- Minus
arm_3R 26016040..26016463 17..440 100   Minus

BS07135.complete Sequence

1418 bp (1418 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635740

> BS07135.complete
GAAGTTATCAGTCGACATGGGTCACCTGTCCACCTCGGAGCGAGTGTGCA
GCAAGACGCCAGCCATCGCGACGGACTCCAGTCCTCCGCTTGTGGCCAGG
AGGTCGAAGTTCCCCAATGGAGACGCCCAGCAGCAGGTGCGCAGGGGAGA
GGACTCCTCGCCCGAGCTGCCGCCCCGTGGCAAGCTCCAACTGCCCCCGA
AGCGGGAGGAGCTGCCCAGGTCGGTGGTGCCCAAGGAGATCGCCAATCAT
GTGCCCAAGGATGCAATTGATCTCGAGGAGTACACCCGCACCTTCGTCGG
AGATCGAGTGTTGGGTTGGCAGTTTCAGGCTCCGCTCAAGTGGGACAAAG
TCATCCAGATCTCGCTCCTGCACATCGTGGCCGGAATCTGCCTGCTGACG
TATCCGCTGCGGGAGCTCAATCCATACACCACCATCTGGTCCTTCTTCGT
TGGCGGCGTGGCCGGATTCGGAGTTACGGCCGGAGCCCATAGGTTCTGGA
CCCACAAGAGCTACAAGGCCAACACCGTGCTGCGATCCATCCTGATGGTC
TGCTACTGCGTGGCTGGACAGAACACCCTGTACGACTGGGTTCGCGACCA
TCGAGTTCATCACAAATACTCGGAGACGGATGCGGATCCCCACAATGCTA
ACAGGGGATTCTTCTTCTCCCACGTGGGCTGGCTAATGATGCTGAAGCAT
CCGGAGGTACTTCGTCGTGGTCGCCAGATCGACATGAGCGACATTCTGGC
TGATCCCGTGGTCCGCTTCCACCAGAAGTACTTCATCCCCCTGAAGACCT
TCTTCTGCTTCATCTTGCCCACCGTGATCCCAGTCTACTGCTGGGGCGAG
ACCTGGACCCTGGCCTTTATCCAGCAGTGCCTCTTCCGCTACGTGAGCAG
CTTGAACTTCACTTGGTCTGTGAACAGTGCCGCCCATCTGTGGGGATCCC
GTCCATACGATAAGCGGATCATGCCCAGCGAGAACATCTATGTGTCCCTG
CTGGCCATGGGCGAGGGATGGCACAACTACCACCACGTATTCCCCTGGGA
CTACAAAGCAGCTGAGCTGGGCAACTACACCGTGAACTTCACCACCATGG
TGCTGGATGCGTTCCACAAGTTGGGGTGGGCCTGGAACATGAAGCAGCCA
TCCAAGGAGCTGGTGCGTCGCACCCTCGAGAAGTACGGCGATGGCACCCA
CGCCTCCCAGCTGGGCGGTCCCGAGGAGTTCAAGGACGGAGTGTTGGCCG
GAGCCACCATGGTGGGTCACGTGCACTACGCCGAGGTTCCAGATCCCGAG
CTCGAGTACGATGCCGAGTCCAGCAGCACGGAGAGCGCCAAATTAGATGA
GAACGAGAATGAGGGCGAGCGAATGAAGAAGTCGAAGAAGGCGGCCAACT
AGAAGCTTTCTAGACCAT

BS07135.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9747-RB 1386 CG9747-PB 1..1386 17..1402 6930 100 Plus
CG9747-RA 1386 CG9747-PA 1..1386 17..1402 6930 100 Plus
CG9743-RA 1263 CG9743-PA 951..1056 991..1096 305 85.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9747-RB 2318 CG9747-RB 512..1897 17..1402 6930 100 Plus
CG9747-RA 2138 CG9747-RA 332..1717 17..1402 6930 100 Plus
CG9743-RA 1733 CG9743-RA 1144..1249 991..1096 305 85.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30185844..30186282 1402..964 2195 100 Minus
3R 32079331 3R 30190318..30190741 440..17 2120 100 Minus
3R 32079331 3R 30186429..30186824 964..569 1980 100 Minus
3R 32079331 3R 30187389..30187519 571..441 655 100 Minus
3R 32079331 3R 30196909..30197014 1096..991 305 85.8 Minus
3R 32079331 3R 13283516..13283594 1001..1079 290 91.1 Plus
3R 32079331 3R 12436889..12436977 596..684 250 85.4 Plus
3R 32079331 3R 12446124..12446221 587..684 250 83.7 Plus
3R 32079331 3R 12446639..12446755 980..1096 210 78.6 Plus
3R 32079331 3R 30197376..30197452 684..608 205 84.4 Minus
Blast to na_te.dros performed on 2014-11-27 13:52:07 has no hits.

BS07135.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:45 Download gff for BS07135.complete
Subject Subject Range Query Range Percent Splice Strand
CG9747-RA 1..1386 17..1402 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:17 Download gff for BS07135.complete
Subject Subject Range Query Range Percent Splice Strand
CG9747-RA 337..1728 17..1407 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:16 Download gff for BS07135.complete
Subject Subject Range Query Range Percent Splice Strand
CG9747-RA 339..1724 17..1402 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:46 Download gff for BS07135.complete
Subject Subject Range Query Range Percent Splice Strand
CG9747-RA 337..1728 17..1407 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:19 Download gff for BS07135.complete
Subject Subject Range Query Range Percent Splice Strand
CG9747-RA 332..1717 17..1402 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:19 Download gff for BS07135.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30185844..30186282 964..1402 100 <- Minus
3R 30186430..30186821 572..963 100 <- Minus
3R 30187389..30187519 441..571 100 <- Minus
3R 30190318..30190741 17..440 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:16 Download gff for BS07135.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26016040..26016463 17..440 100   Minus
arm_3R 26011566..26012004 964..1402 100 <- Minus
arm_3R 26012152..26012543 572..963 100 <- Minus
arm_3R 26013111..26013241 441..571 100 <- Minus

BS07135.pep Sequence

Translation from 16 to 1401

> BS07135.pep
MGHLSTSERVCSKTPAIATDSSPPLVARRSKFPNGDAQQQVRRGEDSSPE
LPPRGKLQLPPKREELPRSVVPKEIANHVPKDAIDLEEYTRTFVGDRVLG
WQFQAPLKWDKVIQISLLHIVAGICLLTYPLRELNPYTTIWSFFVGGVAG
FGVTAGAHRFWTHKSYKANTVLRSILMVCYCVAGQNTLYDWVRDHRVHHK
YSETDADPHNANRGFFFSHVGWLMMLKHPEVLRRGRQIDMSDILADPVVR
FHQKYFIPLKTFFCFILPTVIPVYCWGETWTLAFIQQCLFRYVSSLNFTW
SVNSAAHLWGSRPYDKRIMPSENIYVSLLAMGEGWHNYHHVFPWDYKAAE
LGNYTVNFTTMVLDAFHKLGWAWNMKQPSKELVRRTLEKYGDGTHASQLG
GPEEFKDGVLAGATMVGHVHYAEVPDPELEYDAESSSTESAKLDENENEG
ERMKKSKKAAN*

BS07135.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9747-PB 461 CG9747-PB 1..461 1..461 2507 100 Plus
CG9747-PA 461 CG9747-PA 1..461 1..461 2507 100 Plus
Desat1-PD 383 CG5887-PD 70..377 107..410 887 51.8 Plus
Desat1-PB 383 CG5887-PB 70..377 107..410 887 51.8 Plus
Desat1-PE 383 CG5887-PE 70..377 107..410 887 51.8 Plus