Clone Sequence Records
BS07140.3prime Sequence
857 bp (793 high quality bases) assembled on 2006-01-06
> BS07140.3prime
ATGGTCTAGAAAGCTTCTACTTCTTCCAAGCACTAGCCGACGAGGTCTTC
GAGTAGTTCTGACTCTTCTGCTGCTGGTAGTTCTGCTTGATGTCCGACTT
CTTGGTACTCGAGTAATTCGATCCCATGCCCGAATTGCTGCTGGTGCCAT
TGTAGCTGAAGCTGGACTTAAAGGTGGGGTTGCCAATGCTCTTGAACATC
GGATGATTCTTGCCGGCGCCCACCGGCGGAGCCGACTGATTGTAGTAGCT
CTTCGTGCTATTCTGCTGTCCCTTGTCGTTGGACATTTGACGAACGTAGG
AGGAGAGTCCCAACCCCACAGCGCCCATGCCCATTCCGACGCCCACGCCA
ACGGTGCTCACGCCCACTCCGCCCATTCCCACGCCGTAGGACTGCTGCTT
GTGGCTGGTGCTGAAGGTGGCCGCCTGATGGTCACTGGCCAGAGATCCGC
TCTGTGTGTAGAACTGCTGCTGCACCTCCACTATGTAGCGATAGGCCTCC
TCCATGCTCTTGGGATTCCGGCGCAGGATCATCGAGTGCGTCGGCTCGGG
CAGATGATCTCGGAACACCTGCAGCGTGATGCGCTCTATGTCCTCGAGAC
TGTACAGGGTGTCATTGTGCGTGAGCTTTCTATTGATCAGTCTGTGCTTG
AGTTTGGCCATCTTCTGGTAGTACAACTCTATGTTCGAGTCCAAGACAGC
GCTGCGTATCTTGTGTATCAGCGAGTAGCTAGACTCCCGCTCCGCATAGT
TGTACAGCAGTTGATCCTTGAGTTTTAGCCAGGACTCGGCCTTCAGGAGA
TGACCATTCCCGCCGCCATTGCCATTGCCATTGCCCACGGGAGCGCTCAT
TTGTCGC
BS07140.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4680-PA | 1059 | CG4680-RA | 219..1059 | 857..17 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:54:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grp-RB | 2295 | CG4680-RB | 583..1423 | 857..17 | 4205 | 100 | Minus |
| Grp-RA | 1505 | CG4680-RA | 331..1171 | 857..17 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16395168..16396008 | 857..17 | 4205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:54:25 has no hits.
BS07140.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:27 Download gff for
BS07140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4680-PA | 219..1059 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:50:12 Download gff for
BS07140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4680-PA | 219..1059 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:39:22 Download gff for
BS07140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grp-RA | 540..1385 | 11..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:48:16 Download gff for
BS07140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grp-RA | 331..1176 | 11..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:48:16 Download gff for
BS07140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16395168..16396013 | 11..857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:39:22 Download gff for
BS07140.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16388268..16389113 | 11..857 | 99 | | Minus |
BS07140.5prime Sequence
868 bp (836 high quality bases) assembled on 2006-01-06
> BS07140.5prime
GAAGTTATCAGTCGACATGGATCCCGAGTTCGTGAACAAATACAATCAGG
TCCTTAGCCGTCTGAAGCTAGTGGAGAACTTCGATGGCAGTGATCCTGGC
AAGCTGCCGCAGTTCCTGCACAAAATCGAGGCCCTTATGCCGGCCATAAA
TAGTTTCGACGACTACTACAAGTTTCAATTGATAGGACATATCAAAAATA
AGTGCACAGATCGCGCCAGGGAGGCGGTCTTCACGCGACAAATGAGCGCT
CCCGTGGGCAATGGCAATGGCAATGGCGGCGGGAATGGTCATCTCCTGAA
GGCCGAGTCCTGGCTAAAACTCAAGGATCAACTGCTGTACAACTATGCGG
AGCGGGAGTCTAGCTACTCGCTGATACACAAGATACGCAGCGCTGTCTTG
GACTCGAACATAGAGTTGTACTACCAGAAGATGGCCAAACTCAAGCACAG
ACTGATCAATAGAAAGCTCACGCACAATGACACCCTGTACAGTCTCGAGG
ACATAGAGCGCATCACGCTGCAGGTGTTCCGAGATCATCTGCCCGAGCCG
ACGCACTCGATGATCCTGCGCCGGAATCCCAAGAGCATGGAGGAGGCCTA
TCGCTACATAGTGGAGGTGCAGCAGCAGTTCTACACACAGAGCGGATCTC
TGGCCAGTGACCATCAGGCGGCCACCTTCAGCACCAGCCACAAGCAGCAG
TCCTACGGCGTGGGAATGGGCGGAGTGGGCGTGAGCACCGTTGGCGTGNG
CGTCGGAATGGGCATGGGCGCTGTGGGGTTGGGACTCTCCTCCTACGTTC
GTCAAATGTCCAACGACAAGGGACAGCAGAATAGCACGAAGAGCTACTAC
AATCAGTCGGCTCCGCCG
BS07140.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4680-PA | 1059 | CG4680-RA | 1..852 | 17..868 | 4241 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grp-RB | 2295 | CG4680-RB | 365..1216 | 17..868 | 4249 | 99.9 | Plus |
| Grp-RA | 1505 | CG4680-RA | 113..964 | 17..868 | 4249 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16394950..16395801 | 17..868 | 4249 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 04:46:22 has no hits.
BS07140.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:28 Download gff for
BS07140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4680-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:50:14 Download gff for
BS07140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4680-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:44 Download gff for
BS07140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grp-RA | 311..1173 | 7..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:37 Download gff for
BS07140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grp-RA | 102..964 | 7..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:37 Download gff for
BS07140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16394939..16395801 | 7..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:44 Download gff for
BS07140.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16388039..16388901 | 7..868 | 99 | | Plus |
BS07140.complete Sequence
1091 bp (1091 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635742
> BS07140.complete
GAAGTTATCAGTCGACATGGATCCCGAGTTCGTGAACAAATACAATCAGG
TCCTTAGCCGTCTGAAGCTAGTGGAGAACTTCGATGGCAGTGATCCTGGC
AAGCTGCCGCAGTTCCTGCACAAAATCGAGGCCCTTATGCCGGCCATAAA
TAGTTTCGACGACTACTACAAGTTTCAATTGATAGGACATATCAAAAATA
AGTGCACAGATCGCGCCAGGGAGGCGGTCTTCACGCGACAAATGAGCGCT
CCCGTGGGCAATGGCAATGGCAATGGCGGCGGGAATGGTCATCTCCTGAA
GGCCGAGTCCTGGCTAAAACTCAAGGATCAACTGCTGTACAACTATGCGG
AGCGGGAGTCTAGCTACTCGCTGATACACAAGATACGCAGCGCTGTCTTG
GACTCGAACATAGAGTTGTACTACCAGAAGATGGCCAAACTCAAGCACAG
ACTGATCAATAGAAAGCTCACGCACAATGACACCCTGTACAGTCTCGAGG
ACATAGAGCGCATCACGCTGCAGGTGTTCCGAGATCATCTGCCCGAGCCG
ACGCACTCGATGATCCTGCGCCGGAATCCCAAGAGCATGGAGGAGGCCTA
TCGCTACATAGTGGAGGTGCAGCAGCAGTTCTACACACAGAGCGGATCTC
TGGCCAGTGACCATCAGGCGGCCACCTTCAGCACCAGCCACAAGCAGCAG
TCCTACGGCGTGGGAATGGGCGGAGTGGGCGTGAGCACCGTTGGCGTGGG
CGTCGGAATGGGCATGGGCGCTGTGGGGTTGGGACTCTCCTCCTACGTTC
GTCAAATGTCCAACGACAAGGGACAGCAGAATAGCACGAAGAGCTACTAC
AATCAGTCGGCTCCGCCGGTGGGCGCCGGCAAGAATCATCCGATGTTCAA
GAGCATTGGCAACCCCACCTTTAAGTCCAGCTTCAGCTACAATGGCACCA
GCAGCAATTCGGGCATGGGATCGAATTACTCGAGTACCAAGAAGTCGGAC
ATCAAGCAGAACTACCAGCAGCAGAAGAGTCAGAACTACTCGAAGACCTC
GTCGGCTAGTGCTTGGAAGAAGTAGAAGCTTTCTAGACCAT
BS07140.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grp-RB | 1059 | CG4680-PB | 1..1059 | 17..1075 | 5295 | 100 | Plus |
| Grp-RA | 1059 | CG4680-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grp-RB | 2295 | CG4680-RB | 365..1423 | 17..1075 | 5295 | 100 | Plus |
| Grp-RA | 1505 | CG4680-RA | 113..1171 | 17..1075 | 5295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16394950..16396008 | 17..1075 | 5295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:30:29 has no hits.
BS07140.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:49 Download gff for
BS07140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4680-RA | 1..1059 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:20 Download gff for
BS07140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4680-RA | 311..1385 | 7..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:38 Download gff for
BS07140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grp-RA | 322..1380 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:49 Download gff for
BS07140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4680-RA | 311..1385 | 7..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:41 Download gff for
BS07140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grp-RA | 113..1171 | 17..1075 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:41 Download gff for
BS07140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16394950..16396008 | 17..1075 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:38 Download gff for
BS07140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16388050..16389108 | 17..1075 | 100 | | Plus |
BS07140.pep Sequence
Translation from 16 to 1074
> BS07140.pep
MDPEFVNKYNQVLSRLKLVENFDGSDPGKLPQFLHKIEALMPAINSFDDY
YKFQLIGHIKNKCTDRAREAVFTRQMSAPVGNGNGNGGGNGHLLKAESWL
KLKDQLLYNYAERESSYSLIHKIRSAVLDSNIELYYQKMAKLKHRLINRK
LTHNDTLYSLEDIERITLQVFRDHLPEPTHSMILRRNPKSMEEAYRYIVE
VQQQFYTQSGSLASDHQAATFSTSHKQQSYGVGMGGVGVSTVGVGVGMGM
GAVGLGLSSYVRQMSNDKGQQNSTKSYYNQSAPPVGAGKNHPMFKSIGNP
TFKSSFSYNGTSSNSGMGSNYSSTKKSDIKQNYQQQKSQNYSKTSSASAW
KK*
BS07140.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grp-PB | 352 | CG4680-PB | 1..352 | 1..352 | 1834 | 100 | Plus |
| Grp-PA | 352 | CG4680-PA | 1..352 | 1..352 | 1834 | 100 | Plus |
