Clone Sequence Records
BS07141.3prime Sequence
911 bp (814 high quality bases) assembled on 2006-01-06
> BS07141.3prime
ATGGTCTAGAAAGCTTCTACTTGTTGGCCGCAGCGGCCTTGCCCACTTTG
CCACCCAAGACCTTAAGAGTCGCCTCCACGAGATCCTGAACGCGGGGCAG
GGCGTGGGCCTCCAGCGTCTTGGCATAGGGCATGGGCACATCCACGCCGG
CGCAGCGCCATACGGGGGCGTCCAGCTCGAAGAAGGTCTGGTCCTCCATT
ATGCGGGCGCAGATCTCAGCTCCAACGCCGTGTTGGGGCCAGCCGTTCTC
CACGGTCACCAGATGGTGGGTCTTTCGTACAGAGGCGAAGATGGTCGCCG
TGTCCAGAGGACGAATGGAGCGCAGGTTAATGACCTCAGCCTCAATACCC
TTCTTGGCCAGCTCGGCAGCTGCCAGAAGCGATGTCTCCACCGCCTTGGA
ATGCGCCACCAGGGTAATGTCCTTGCCCGGCCGCATTACCTTGGCCTTGC
CGATGGGCACCAAGAAGTCCTTGTCGGCCACGTTATCGGCCACAGGGAAT
GCCGTGCCATAGACCAGCTCATTCTCCAGGAAGACCACTGGATCGGGATC
ACGGATTGCGGACTTCAACAGTCCGCGGGCATCCTCGGCATCGTATGGCG
AAAGGACCTTCAGGCCGGGGCAGTGGGCGTACCAGGCGGCGAAGCACTGA
GAGTGCTGGGCGGCAACACCGGAAGCGGCTCCATTGGGACCACGGAACAC
AATGGGCACATTGACGGCACCGGCAGACATGTAGAAGGTCTTGGCCGCCG
AGTTGATGATGTGATCGATGGCCTGCATGGAGAAGTTCCAGGTCATGAAC
TCGCACACGGGACGCAGACCGGCCATGGCAGCGCCAACAGCGATGCCGGC
AAAGCCCATCTCTGTGATTGGCGTGTCGATGACGCGCTTGTCGCCGTACT
TTCTCCACAGT
BS07141.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11876-PA | 1098 | CG11876-RA | 214..1098 | 901..17 | 4425 | 100 | Minus |
CG11876-PD | 1098 | CG11876-RD | 214..1098 | 901..17 | 4425 | 100 | Minus |
CG11876-PC | 822 | CG11876-RC | 214..354 | 901..761 | 705 | 100 | Minus |
CG11876-PB | 822 | CG11876-RB | 214..354 | 901..761 | 705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11876-RD | 1386 | CG11876-RD | 254..1148 | 911..17 | 4445 | 99.8 | Minus |
CG11876-RA | 1455 | CG11876-RA | 323..1217 | 911..17 | 4445 | 99.8 | Minus |
CG11876-RB | 1025 | CG11876-RB | 357..507 | 911..761 | 725 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29115094..29115508 | 760..346 | 2075 | 100 | Minus |
3R | 32079331 | 3R | 29115747..29115959 | 229..17 | 1065 | 100 | Minus |
3R | 32079331 | 3R | 29114005..29114155 | 911..761 | 725 | 98.7 | Minus |
3R | 32079331 | 3R | 29115566..29115687 | 349..228 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:05:30 has no hits.
BS07141.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:29 Download gff for
BS07141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-PD | 204..1098 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:50:15 Download gff for
BS07141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-PD | 204..1098 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:20:29 Download gff for
BS07141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RA | 323..1222 | 12..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:48:44 Download gff for
BS07141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RA | 323..1222 | 12..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:48:44 Download gff for
BS07141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29114005..29114155 | 761..911 | 98 | -> | Minus |
3R | 29115094..29115505 | 349..760 | 100 | -> | Minus |
3R | 29115567..29115686 | 229..348 | 100 | -> | Minus |
3R | 29115748..29115964 | 12..228 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:20:29 Download gff for
BS07141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24939727..24939877 | 761..911 | 98 | -> | Minus |
arm_3R | 24940816..24941227 | 349..760 | 100 | -> | Minus |
arm_3R | 24941289..24941408 | 229..348 | 100 | -> | Minus |
arm_3R | 24941470..24941686 | 12..228 | 99 | | Minus |
BS07141.5prime Sequence
920 bp (777 high quality bases) assembled on 2006-01-06
> BS07141.5prime
GAAGTTATCAGTCGACATGCTCCGAACCCGACTCATCCAGGCGGCCAGCT
CCGCCCAGCGAGCGTTCTCCACCAGCCAGAAGGCCCTGGCGGCCAAGCAG
ATGACCGTGCGAGATGCCCTCAACAGCGCATTGGACGATGAGCTGGCCCG
CGACGACCGCGTCTTCATCCTGGGCGAGGAGGTGGCCCAGTACGACGGTG
CTTACAAGGTTTCCCGTGGACTGTGGAAGAAGTACGGCGACAAGCGCGTC
ATCGACACGCCAATCACAGAGATGGGCTTTGCCGGCATCGCTGTTGGCGC
TGCCATGGCCGGTCTGCGTCCCGTGTGCGAGTTCATGACCTGGAACTTCT
CCATGCAGGCCATCGATCACATCATCAACTCGGCGGCCAAGACCTTCTAC
ATGTCTGCCGGTGCCGTCAATGTGCCCATTGTGTTCCGTGGTCCCAATGG
AGCCGCTTCCGGTGTTGCCGCCCAGCACTCTCAGTGCTTCGCCGCCTGGT
ACGCCCACTGCCCCGGCCTGAAGGTCCTTTCGCCATACGATGCCGAGGAT
GCCCGCGGACTGTTGAAGTCCGCAATCCGTGATCCCGATCCAGTGGTCTT
CCTGGAGAATGAGCTGGTCTATGGCACGGCATTCCCTGTGGCCGATAACG
TGGCCGACAAGGACTTCTTGGTGCCCATCGGCAAGGCCAAGGTAATGCGG
CCGGGCAAGGACATTACCCTGGTGGCGCATTCCAAGGCGGTGGAGACATC
GCTTCTGGCAGCTGCCGAGCTGGCCAAGAAGGGTATTGAGGCTGAGGTCA
TTAACCTGCGCTCCATTCGTCCTCTGGACACGGCGACCATCTTCGCCTCT
GTACGAAAGACCCACCATCTGGTGACCGTGGAGAACGGCCTGGCCCAACA
CGGGCGTGGAGCTGAGATCT
BS07141.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11876-PA | 1098 | CG11876-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
CG11876-PD | 1098 | CG11876-RD | 1..873 | 17..889 | 4365 | 100 | Plus |
CG11876-PC | 822 | CG11876-RC | 1..354 | 17..370 | 1770 | 100 | Plus |
CG11876-PB | 822 | CG11876-RB | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11876-RD | 1386 | CG11876-RD | 51..954 | 17..920 | 4430 | 99.6 | Plus |
CG11876-RA | 1455 | CG11876-RA | 120..1023 | 17..920 | 4430 | 99.6 | Plus |
CG11876-RB | 1025 | CG11876-RB | 154..507 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29115094..29115508 | 371..785 | 2075 | 100 | Plus |
3R | 32079331 | 3R | 29113258..29113451 | 17..210 | 970 | 100 | Plus |
3R | 32079331 | 3R | 29113992..29114155 | 207..370 | 820 | 100 | Plus |
3R | 32079331 | 3R | 29115566..29115687 | 782..903 | 565 | 97.5 | Plus |
Blast to na_te.dros performed on 2015-02-02 10:49:04 has no hits.
BS07141.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:30 Download gff for
BS07141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-PD | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:50:17 Download gff for
BS07141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-PD | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:33:13 Download gff for
BS07141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RA | 115..1023 | 13..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:42:12 Download gff for
BS07141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RA | 115..1023 | 13..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:42:12 Download gff for
BS07141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29113253..29113449 | 13..208 | 99 | -> | Plus |
3R | 29113994..29114155 | 209..370 | 100 | -> | Plus |
3R | 29115094..29115505 | 371..782 | 100 | -> | Plus |
3R | 29115567..29115686 | 783..902 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:33:13 Download gff for
BS07141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24938975..24939171 | 13..208 | 99 | -> | Plus |
arm_3R | 24939716..24939877 | 209..370 | 100 | -> | Plus |
arm_3R | 24940816..24941227 | 371..782 | 100 | -> | Plus |
arm_3R | 24941289..24941408 | 783..902 | 98 | -> | Plus |
BS07141.complete Sequence
1130 bp (1130 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635743
> BS07141.complete
GAAGTTATCAGTCGACATGCTCCGAACCCGACTCATCCAGGCGGCCAGCT
CCGCCCAGCGAGCGTTCTCCACCAGCCAGAAGGCCCTGGCGGCCAAGCAG
ATGACCGTGCGAGATGCCCTCAACAGCGCATTGGACGATGAGCTGGCCCG
CGACGACCGCGTCTTCATCCTGGGCGAGGAGGTGGCCCAGTACGACGGTG
CTTACAAGGTTTCCCGTGGACTGTGGAAGAAGTACGGCGACAAGCGCGTC
ATCGACACGCCAATCACAGAGATGGGCTTTGCCGGCATCGCTGTTGGCGC
TGCCATGGCCGGTCTGCGTCCCGTGTGCGAGTTCATGACCTGGAACTTCT
CCATGCAGGCCATCGATCACATCATCAACTCGGCGGCCAAGACCTTCTAC
ATGTCTGCCGGTGCCGTCAATGTGCCCATTGTGTTCCGTGGTCCCAATGG
AGCCGCTTCCGGTGTTGCCGCCCAGCACTCTCAGTGCTTCGCCGCCTGGT
ACGCCCACTGCCCCGGCCTGAAGGTCCTTTCGCCATACGATGCCGAGGAT
GCCCGCGGACTGTTGAAGTCCGCAATCCGTGATCCCGATCCAGTGGTCTT
CCTGGAGAATGAGCTGGTCTATGGCACGGCATTCCCTGTGGCCGATAACG
TGGCCGACAAGGACTTCTTGGTGCCCATCGGCAAGGCCAAGGTAATGCGG
CCGGGCAAGGACATTACCCTGGTGGCGCATTCCAAGGCGGTGGAGACATC
GCTTCTGGCAGCTGCCGAGCTGGCCAAGAAGGGTATTGAGGCTGAGGTCA
TTAACCTGCGCTCCATTCGTCCTCTGGACACGGCGACCATCTTCGCCTCT
GTACGAAAGACCCACCATCTGGTGACCGTGGAGAACGGCTGGCCCCAACA
CGGCGTTGGAGCTGAGATCTGCGCCCGCATAATGGAGGACCAGACCTTCT
TCGAGCTGGACGCCCCCGTATGGCGCTGCGCCGGCGTGGATGTGCCCATG
CCCTATGCCAAGACGCTGGAGGCCCACGCCCTGCCCCGCGTTCAGGATCT
CGTGGAGGCGACTCTTAAGGTCTTGGGTGGCAAAGTGGGCAAGGCCGCTG
CGGCCAACAAGTAGAAGCTTTCTAGACCAT
BS07141.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:20:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11876-RD | 1098 | CG11876-PD | 1..1098 | 17..1114 | 5490 | 100 | Plus |
CG11876-RA | 1098 | CG11876-PA | 1..1098 | 17..1114 | 5490 | 100 | Plus |
CG11876-RB | 822 | CG11876-PB | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11876-RD | 1386 | CG11876-RD | 51..1148 | 17..1114 | 5490 | 100 | Plus |
CG11876-RA | 1455 | CG11876-RA | 120..1217 | 17..1114 | 5490 | 100 | Plus |
CG11876-RB | 1025 | CG11876-RB | 154..507 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29115094..29115508 | 371..785 | 2075 | 100 | Plus |
3R | 32079331 | 3R | 29115747..29115959 | 902..1114 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 29113258..29113451 | 17..210 | 970 | 100 | Plus |
3R | 32079331 | 3R | 29113992..29114155 | 207..370 | 820 | 100 | Plus |
3R | 32079331 | 3R | 29115566..29115687 | 782..903 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:20:50 has no hits.
BS07141.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:04 Download gff for
BS07141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RD | 1..1098 | 17..1114 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:24 Download gff for
BS07141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RD | 149..1256 | 13..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:59 Download gff for
BS07141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RA | 120..1217 | 17..1114 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:05 Download gff for
BS07141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RD | 149..1256 | 13..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:16 Download gff for
BS07141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11876-RA | 120..1217 | 17..1114 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:16 Download gff for
BS07141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29113258..29113449 | 17..208 | 100 | -> | Plus |
3R | 29113994..29114155 | 209..370 | 100 | -> | Plus |
3R | 29115094..29115505 | 371..782 | 100 | -> | Plus |
3R | 29115567..29115686 | 783..902 | 100 | -> | Plus |
3R | 29115748..29115959 | 903..1114 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:59 Download gff for
BS07141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24938980..24939171 | 17..208 | 100 | -> | Plus |
arm_3R | 24939716..24939877 | 209..370 | 100 | -> | Plus |
arm_3R | 24940816..24941227 | 371..782 | 100 | -> | Plus |
arm_3R | 24941289..24941408 | 783..902 | 100 | -> | Plus |
arm_3R | 24941470..24941681 | 903..1114 | 100 | | Plus |
BS07141.pep Sequence
Translation from 16 to 1113
> BS07141.pep
MLRTRLIQAASSAQRAFSTSQKALAAKQMTVRDALNSALDDELARDDRVF
ILGEEVAQYDGAYKVSRGLWKKYGDKRVIDTPITEMGFAGIAVGAAMAGL
RPVCEFMTWNFSMQAIDHIINSAAKTFYMSAGAVNVPIVFRGPNGAASGV
AAQHSQCFAAWYAHCPGLKVLSPYDAEDARGLLKSAIRDPDPVVFLENEL
VYGTAFPVADNVADKDFLVPIGKAKVMRPGKDITLVAHSKAVETSLLAAA
ELAKKGIEAEVINLRSIRPLDTATIFASVRKTHHLVTVENGWPQHGVGAE
ICARIMEDQTFFELDAPVWRCAGVDVPMPYAKTLEAHALPRVQDLVEATL
KVLGGKVGKAAAANK*
BS07141.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11876-PD | 365 | CG11876-PD | 1..365 | 1..365 | 1866 | 100 | Plus |
CG11876-PA | 365 | CG11876-PA | 1..365 | 1..365 | 1866 | 100 | Plus |
CG11876-PB | 273 | CG11876-PB | 1..118 | 1..118 | 596 | 100 | Plus |
CG11876-PC | 273 | CG11876-PC | 1..118 | 1..118 | 596 | 100 | Plus |
CG17691-PE | 364 | CG17691-PE | 41..341 | 27..330 | 468 | 36.8 | Plus |