Clone BS07141 Report

Search the DGRC for BS07141

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG11876-RA
Protein status:BS07141.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07141.3prime Sequence

911 bp (814 high quality bases) assembled on 2006-01-06

> BS07141.3prime
ATGGTCTAGAAAGCTTCTACTTGTTGGCCGCAGCGGCCTTGCCCACTTTG
CCACCCAAGACCTTAAGAGTCGCCTCCACGAGATCCTGAACGCGGGGCAG
GGCGTGGGCCTCCAGCGTCTTGGCATAGGGCATGGGCACATCCACGCCGG
CGCAGCGCCATACGGGGGCGTCCAGCTCGAAGAAGGTCTGGTCCTCCATT
ATGCGGGCGCAGATCTCAGCTCCAACGCCGTGTTGGGGCCAGCCGTTCTC
CACGGTCACCAGATGGTGGGTCTTTCGTACAGAGGCGAAGATGGTCGCCG
TGTCCAGAGGACGAATGGAGCGCAGGTTAATGACCTCAGCCTCAATACCC
TTCTTGGCCAGCTCGGCAGCTGCCAGAAGCGATGTCTCCACCGCCTTGGA
ATGCGCCACCAGGGTAATGTCCTTGCCCGGCCGCATTACCTTGGCCTTGC
CGATGGGCACCAAGAAGTCCTTGTCGGCCACGTTATCGGCCACAGGGAAT
GCCGTGCCATAGACCAGCTCATTCTCCAGGAAGACCACTGGATCGGGATC
ACGGATTGCGGACTTCAACAGTCCGCGGGCATCCTCGGCATCGTATGGCG
AAAGGACCTTCAGGCCGGGGCAGTGGGCGTACCAGGCGGCGAAGCACTGA
GAGTGCTGGGCGGCAACACCGGAAGCGGCTCCATTGGGACCACGGAACAC
AATGGGCACATTGACGGCACCGGCAGACATGTAGAAGGTCTTGGCCGCCG
AGTTGATGATGTGATCGATGGCCTGCATGGAGAAGTTCCAGGTCATGAAC
TCGCACACGGGACGCAGACCGGCCATGGCAGCGCCAACAGCGATGCCGGC
AAAGCCCATCTCTGTGATTGGCGTGTCGATGACGCGCTTGTCGCCGTACT
TTCTCCACAGT

BS07141.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11876-PA 1098 CG11876-RA 214..1098 901..17 4425 100 Minus
CG11876-PD 1098 CG11876-RD 214..1098 901..17 4425 100 Minus
CG11876-PC 822 CG11876-RC 214..354 901..761 705 100 Minus
CG11876-PB 822 CG11876-RB 214..354 901..761 705 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11876-RD 1386 CG11876-RD 254..1148 911..17 4445 99.8 Minus
CG11876-RA 1455 CG11876-RA 323..1217 911..17 4445 99.8 Minus
CG11876-RB 1025 CG11876-RB 357..507 911..761 725 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29115094..29115508 760..346 2075 100 Minus
3R 32079331 3R 29115747..29115959 229..17 1065 100 Minus
3R 32079331 3R 29114005..29114155 911..761 725 98.7 Minus
3R 32079331 3R 29115566..29115687 349..228 610 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:05:30 has no hits.

BS07141.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:29 Download gff for BS07141.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-PD 204..1098 17..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:50:15 Download gff for BS07141.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-PD 204..1098 17..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:20:29 Download gff for BS07141.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-RA 323..1222 12..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:48:44 Download gff for BS07141.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-RA 323..1222 12..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:48:44 Download gff for BS07141.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29114005..29114155 761..911 98 -> Minus
3R 29115094..29115505 349..760 100 -> Minus
3R 29115567..29115686 229..348 100 -> Minus
3R 29115748..29115964 12..228 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:20:29 Download gff for BS07141.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24939727..24939877 761..911 98 -> Minus
arm_3R 24940816..24941227 349..760 100 -> Minus
arm_3R 24941289..24941408 229..348 100 -> Minus
arm_3R 24941470..24941686 12..228 99   Minus

BS07141.5prime Sequence

920 bp (777 high quality bases) assembled on 2006-01-06

> BS07141.5prime
GAAGTTATCAGTCGACATGCTCCGAACCCGACTCATCCAGGCGGCCAGCT
CCGCCCAGCGAGCGTTCTCCACCAGCCAGAAGGCCCTGGCGGCCAAGCAG
ATGACCGTGCGAGATGCCCTCAACAGCGCATTGGACGATGAGCTGGCCCG
CGACGACCGCGTCTTCATCCTGGGCGAGGAGGTGGCCCAGTACGACGGTG
CTTACAAGGTTTCCCGTGGACTGTGGAAGAAGTACGGCGACAAGCGCGTC
ATCGACACGCCAATCACAGAGATGGGCTTTGCCGGCATCGCTGTTGGCGC
TGCCATGGCCGGTCTGCGTCCCGTGTGCGAGTTCATGACCTGGAACTTCT
CCATGCAGGCCATCGATCACATCATCAACTCGGCGGCCAAGACCTTCTAC
ATGTCTGCCGGTGCCGTCAATGTGCCCATTGTGTTCCGTGGTCCCAATGG
AGCCGCTTCCGGTGTTGCCGCCCAGCACTCTCAGTGCTTCGCCGCCTGGT
ACGCCCACTGCCCCGGCCTGAAGGTCCTTTCGCCATACGATGCCGAGGAT
GCCCGCGGACTGTTGAAGTCCGCAATCCGTGATCCCGATCCAGTGGTCTT
CCTGGAGAATGAGCTGGTCTATGGCACGGCATTCCCTGTGGCCGATAACG
TGGCCGACAAGGACTTCTTGGTGCCCATCGGCAAGGCCAAGGTAATGCGG
CCGGGCAAGGACATTACCCTGGTGGCGCATTCCAAGGCGGTGGAGACATC
GCTTCTGGCAGCTGCCGAGCTGGCCAAGAAGGGTATTGAGGCTGAGGTCA
TTAACCTGCGCTCCATTCGTCCTCTGGACACGGCGACCATCTTCGCCTCT
GTACGAAAGACCCACCATCTGGTGACCGTGGAGAACGGCCTGGCCCAACA
CGGGCGTGGAGCTGAGATCT

BS07141.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11876-PA 1098 CG11876-RA 1..873 17..889 4365 100 Plus
CG11876-PD 1098 CG11876-RD 1..873 17..889 4365 100 Plus
CG11876-PC 822 CG11876-RC 1..354 17..370 1770 100 Plus
CG11876-PB 822 CG11876-RB 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11876-RD 1386 CG11876-RD 51..954 17..920 4430 99.6 Plus
CG11876-RA 1455 CG11876-RA 120..1023 17..920 4430 99.6 Plus
CG11876-RB 1025 CG11876-RB 154..507 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29115094..29115508 371..785 2075 100 Plus
3R 32079331 3R 29113258..29113451 17..210 970 100 Plus
3R 32079331 3R 29113992..29114155 207..370 820 100 Plus
3R 32079331 3R 29115566..29115687 782..903 565 97.5 Plus
Blast to na_te.dros performed on 2015-02-02 10:49:04 has no hits.

BS07141.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:30 Download gff for BS07141.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-PD 1..904 17..920 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:50:17 Download gff for BS07141.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-PD 1..904 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:33:13 Download gff for BS07141.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-RA 115..1023 13..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:42:12 Download gff for BS07141.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11876-RA 115..1023 13..920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:42:12 Download gff for BS07141.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29113253..29113449 13..208 99 -> Plus
3R 29113994..29114155 209..370 100 -> Plus
3R 29115094..29115505 371..782 100 -> Plus
3R 29115567..29115686 783..902 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:33:13 Download gff for BS07141.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24938975..24939171 13..208 99 -> Plus
arm_3R 24939716..24939877 209..370 100 -> Plus
arm_3R 24940816..24941227 371..782 100 -> Plus
arm_3R 24941289..24941408 783..902 98 -> Plus

BS07141.complete Sequence

1130 bp (1130 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635743

> BS07141.complete
GAAGTTATCAGTCGACATGCTCCGAACCCGACTCATCCAGGCGGCCAGCT
CCGCCCAGCGAGCGTTCTCCACCAGCCAGAAGGCCCTGGCGGCCAAGCAG
ATGACCGTGCGAGATGCCCTCAACAGCGCATTGGACGATGAGCTGGCCCG
CGACGACCGCGTCTTCATCCTGGGCGAGGAGGTGGCCCAGTACGACGGTG
CTTACAAGGTTTCCCGTGGACTGTGGAAGAAGTACGGCGACAAGCGCGTC
ATCGACACGCCAATCACAGAGATGGGCTTTGCCGGCATCGCTGTTGGCGC
TGCCATGGCCGGTCTGCGTCCCGTGTGCGAGTTCATGACCTGGAACTTCT
CCATGCAGGCCATCGATCACATCATCAACTCGGCGGCCAAGACCTTCTAC
ATGTCTGCCGGTGCCGTCAATGTGCCCATTGTGTTCCGTGGTCCCAATGG
AGCCGCTTCCGGTGTTGCCGCCCAGCACTCTCAGTGCTTCGCCGCCTGGT
ACGCCCACTGCCCCGGCCTGAAGGTCCTTTCGCCATACGATGCCGAGGAT
GCCCGCGGACTGTTGAAGTCCGCAATCCGTGATCCCGATCCAGTGGTCTT
CCTGGAGAATGAGCTGGTCTATGGCACGGCATTCCCTGTGGCCGATAACG
TGGCCGACAAGGACTTCTTGGTGCCCATCGGCAAGGCCAAGGTAATGCGG
CCGGGCAAGGACATTACCCTGGTGGCGCATTCCAAGGCGGTGGAGACATC
GCTTCTGGCAGCTGCCGAGCTGGCCAAGAAGGGTATTGAGGCTGAGGTCA
TTAACCTGCGCTCCATTCGTCCTCTGGACACGGCGACCATCTTCGCCTCT
GTACGAAAGACCCACCATCTGGTGACCGTGGAGAACGGCTGGCCCCAACA
CGGCGTTGGAGCTGAGATCTGCGCCCGCATAATGGAGGACCAGACCTTCT
TCGAGCTGGACGCCCCCGTATGGCGCTGCGCCGGCGTGGATGTGCCCATG
CCCTATGCCAAGACGCTGGAGGCCCACGCCCTGCCCCGCGTTCAGGATCT
CGTGGAGGCGACTCTTAAGGTCTTGGGTGGCAAAGTGGGCAAGGCCGCTG
CGGCCAACAAGTAGAAGCTTTCTAGACCAT

BS07141.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11876-RD 1098 CG11876-PD 1..1098 17..1114 5490 100 Plus
CG11876-RA 1098 CG11876-PA 1..1098 17..1114 5490 100 Plus
CG11876-RB 822 CG11876-PB 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11876-RD 1386 CG11876-RD 51..1148 17..1114 5490 100 Plus
CG11876-RA 1455 CG11876-RA 120..1217 17..1114 5490 100 Plus
CG11876-RB 1025 CG11876-RB 154..507 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29115094..29115508 371..785 2075 100 Plus
3R 32079331 3R 29115747..29115959 902..1114 1065 100 Plus
3R 32079331 3R 29113258..29113451 17..210 970 100 Plus
3R 32079331 3R 29113992..29114155 207..370 820 100 Plus
3R 32079331 3R 29115566..29115687 782..903 610 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:20:50 has no hits.

BS07141.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:04 Download gff for BS07141.complete
Subject Subject Range Query Range Percent Splice Strand
CG11876-RD 1..1098 17..1114 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:24 Download gff for BS07141.complete
Subject Subject Range Query Range Percent Splice Strand
CG11876-RD 149..1256 13..1119 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:59 Download gff for BS07141.complete
Subject Subject Range Query Range Percent Splice Strand
CG11876-RA 120..1217 17..1114 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:05 Download gff for BS07141.complete
Subject Subject Range Query Range Percent Splice Strand
CG11876-RD 149..1256 13..1119 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:16 Download gff for BS07141.complete
Subject Subject Range Query Range Percent Splice Strand
CG11876-RA 120..1217 17..1114 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:16 Download gff for BS07141.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29113258..29113449 17..208 100 -> Plus
3R 29113994..29114155 209..370 100 -> Plus
3R 29115094..29115505 371..782 100 -> Plus
3R 29115567..29115686 783..902 100 -> Plus
3R 29115748..29115959 903..1114 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:59 Download gff for BS07141.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24938980..24939171 17..208 100 -> Plus
arm_3R 24939716..24939877 209..370 100 -> Plus
arm_3R 24940816..24941227 371..782 100 -> Plus
arm_3R 24941289..24941408 783..902 100 -> Plus
arm_3R 24941470..24941681 903..1114 100   Plus

BS07141.pep Sequence

Translation from 16 to 1113

> BS07141.pep
MLRTRLIQAASSAQRAFSTSQKALAAKQMTVRDALNSALDDELARDDRVF
ILGEEVAQYDGAYKVSRGLWKKYGDKRVIDTPITEMGFAGIAVGAAMAGL
RPVCEFMTWNFSMQAIDHIINSAAKTFYMSAGAVNVPIVFRGPNGAASGV
AAQHSQCFAAWYAHCPGLKVLSPYDAEDARGLLKSAIRDPDPVVFLENEL
VYGTAFPVADNVADKDFLVPIGKAKVMRPGKDITLVAHSKAVETSLLAAA
ELAKKGIEAEVINLRSIRPLDTATIFASVRKTHHLVTVENGWPQHGVGAE
ICARIMEDQTFFELDAPVWRCAGVDVPMPYAKTLEAHALPRVQDLVEATL
KVLGGKVGKAAAANK*

BS07141.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11876-PD 365 CG11876-PD 1..365 1..365 1866 100 Plus
CG11876-PA 365 CG11876-PA 1..365 1..365 1866 100 Plus
CG11876-PB 273 CG11876-PB 1..118 1..118 596 100 Plus
CG11876-PC 273 CG11876-PC 1..118 1..118 596 100 Plus
CG17691-PE 364 CG17691-PE 41..341 27..330 468 36.8 Plus