Clone Sequence Records
BS07145.3prime Sequence
908 bp (879 high quality bases) assembled on 2006-01-06
> BS07145.3prime
ATGGTCTAGAAAGCTTTCACCACCGGGGACTACGTCGATTTGGTTCGGAA
CGCTCGTATTGGATGCTCTTGAAGCGGCTACTTGCCTCCAGATGCAGCTG
CTGCTGTTTCGGTTCCGGATGTCCACGAGTGACAATGTCTTTCCAAATCA
TGGTCAAAAGTATGAAGATAGCACCCACAATCTTGTTCAGAAACTCGATT
AGTTTAAACACTATTGGAGTGGCTGTATGTGTGAAACGACTCAGCTCAAA
CAGGAATCGCACAGCAAATACGCCTAGGAATCGTAGCGCTAGTGCGGCTC
CACCCAAGGCAGAGAAAATTAGTAGACCCAGAAACCGAATGGTGCCCAAA
ATGTTCCTCTTGTTGACATCGTTGGTCATGAAGTCGTACACGGTTTGTTT
GACTCCATCACCCCACTGTTGCAGCACAGCCAAAAAATCATTAAGGCCCA
GCTGAATTTGCTCCGCCACTTCATCCGGCTTGGAGGAGGAGTTTTCCCCA
CCCGCTGTGATCGCCTTAACAGGGCTACTTCTATTAAGAATCAGTGATCT
CCTCGGCGTCGCCATCAGCTCTGGCTCCACGGGCCTTATCATCTTCAGTT
TGAACTGGACTTCATGGTCCCGGAAGCGAAGGGTCTTGATGCTAAACCAA
TACTCTCCAAAAGCCAGATCATTCATCTCTGTCCAGATGCAGGTTTCCAG
TTGACCAGGATCTGCTTTGTGCTGGTAACTTCCGTAACTCCCATAGGTGA
TGCCCACCCACATATTGGGCACGAAGCGTTGATAAAACTTTTGTAATTGG
CCGGCACTCGAGTGCAGCAGCTTCTCCAACTCTCGCTCACTGCGTTGAAG
CACCACCACGTCCCGGTAGCCGGACACCTGCTCCCACCAGCAGCGTTCCC
ATATATAA
BS07145.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-PA | 1002 | CG4287-RA | 135..1002 | 884..17 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-RB | 1644 | CG4287-RB | 386..1273 | 905..17 | 4375 | 99.7 | Minus |
| CG4287-RA | 1648 | CG4287-RA | 390..1277 | 905..17 | 4375 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15962538..15963420 | 17..899 | 4370 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:59:14 has no hits.
BS07145.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:38 Download gff for
BS07145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-PA | 113..1002 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:50:26 Download gff for
BS07145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-PA | 113..1002 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:09:03 Download gff for
BS07145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RA | 368..1259 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:57 Download gff for
BS07145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RA | 386..1277 | 17..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:57 Download gff for
BS07145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15962538..15963429 | 17..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:09:03 Download gff for
BS07145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11788260..11789151 | 17..908 | 99 | | Plus |
BS07145.5prime Sequence
926 bp (845 high quality bases) assembled on 2006-01-06
> BS07145.5prime
GAAGTTATCAGTCGACATGGACAACAGCGCGTTGATGCCACAGGCGAGCG
GACGTCATATGCCGCCCGAGGAACTGGCCATGCAAGCACTAACCAAGCAG
CTTTACAAGTCTCGTCTCTTCCGCGGTTATTATATGGAACGCTGCTTGGT
GGAGCAGGTGTCCGGCTACCGGGACGTGGTGGTGCTTCAACGCAGTGAGC
GAGAGTTGGAGAAGCTGCTGCACTCGAGTGCCGGCCAATTACAAAAGTTT
TATCAACGCTTCGTGCCCAATATGTGGGTGGGCATCACCTATGGGAGTTA
CGGAAGTTACCAGCACAAAGCAGATCCTGGTCAACTGGAAACCTGCATCT
GGACAGAGATGAATGATCTGGCTTTTGGAGAGTATTGGTTTAGCATCAAG
ACCCTTCGCTTCCGGGACCATGAAGTCCAGTTCAAACTGAAGATGATAAG
GCCCGTGGAGCCAGAGCTGATGGCGACGCCGAGGAGATCACTGATTCTTA
ATAGAAGTAGCCCTGTTAAGGCGATCACAGCGGGTGGGGAAAACTCCTCC
TCCAAGCCGGATGAAGTGGCGGAGCAAATTCAGCTGGGCCTTAATGATTT
TTTGGCTGTGCTGCAACAGTGGGGTGATGGAGTCAAACAAACCGTGTACG
ACTTCATGACCAACGATGTCAACAAGAGGAACATTTTGGGCACCATTCGG
TTTCTGGGTCTACTAATTTTCTCTGCCTTGGGTGGAGCCGCACTAGCGCT
ACGATTCCTAGGCGTATTTGCTGTGCGATTCCTGTTTGAGCTGAGTCGTT
TCACACATACAGCCACTCCAATAGTGTTTAAACTAATCGAGTTTCTGAAC
AAGATTGTGGGTGCTATCTTCATACTTTTGACCATGATTTGGAAAGACAT
TGTCACTCGTGGACATCCGGAACCGG
BS07145.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-PA | 1002 | CG4287-RA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-RB | 1644 | CG4287-RB | 261..1180 | 6..925 | 4570 | 99.8 | Plus |
| CG4287-RA | 1648 | CG4287-RA | 275..1184 | 16..925 | 4550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15962631..15963540 | 925..16 | 4550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:09:29 has no hits.
BS07145.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:39 Download gff for
BS07145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-PA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:50:27 Download gff for
BS07145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-PA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:31 Download gff for
BS07145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RB | 243..1162 | 6..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:41:21 Download gff for
BS07145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RB | 261..1180 | 6..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:41:21 Download gff for
BS07145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15962630..15963548 | 9..926 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:31 Download gff for
BS07145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11788352..11789270 | 9..926 | 99 | | Minus |
BS07145.complete Sequence
1034 bp (1034 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635744
> BS07145.complete
GAAGTTATCAGTCGACATGGACAACAGCGCGTTGATGCCACAGGCGAGCG
GACGTCATATGCCGCCCGAGGAACTGGCCATGCAAGCACTAACCAAGCAG
CTTTACAAGTCTCGTCTCTTCCGCGGTTATTATATGGAACGCTGCTTGGT
GGAGCAGGTGTCCGGCTACCGGGACGTGGTGGTGCTTCAACGCAGTGAGC
GAGAGTTGGAGAAGCTGCTGCACTCGAGTGCCGGCCAATTACAAAAGTTT
TATCAACGCTTCGTGCCCAATATGTGGGTGGGCATCACCTATGGGAGTTA
CGGAAGTTACCAGCACAAAGCAGATCCTGGTCAACTGGAAACCTGCATCT
GGACAGAGATGAATGATCTGGCTTTTGGAGAGTATTGGTTTAGCATCAAG
ACCCTTCGCTTCCGGGACCATGAAGTCCAGTTCAAACTGAAGATGATAAG
GCCCGTGGAGCCAGAGCTGATGGCGACGCCGAGGAGATCACTGATTCTTA
ATAGAAGTAGCCCTGTTAAGGCGATCACAGCGGGTGGGGAAAACTCCTCC
TCCAAGCCGGATGAAGTGGCGGAGCAAATTCAGCTGGGCCTTAATGATTT
TTTGGCTGTGCTGCAACAGTGGGGTGATGGAGTCAAACAAACCGTGTACG
ACTTCATGACCAACGATGTCAACAAGAGGAACATTTTGGGCACCATTCGG
TTTCTGGGTCTACTAATTTTCTCTGCCTTGGGTGGAGCCGCACTAGCGCT
ACGATTCCTAGGCGTATTTGCTGTGCGATTCCTGTTTGAGCTGAGTCGTT
TCACACATACAGCCACTCCAATAGTGTTTAAACTAATCGAGTTTCTGAAC
AAGATTGTGGGTGCTATCTTCATACTTTTGACCATGATTTGGAAAGACAT
TGTCACTCGTGGACATCCGGAACCGAAACAGCAGCAGCTGCATCTGGAGG
CAAGTAGCCGCTTCAAGAGCATCCAATACGAGCGTTCCGAACCAAATCGA
CGTAGTCCCCGGTGGTGAAAGCTTTCTAGACCAT
BS07145.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-RB | 1002 | CG4287-PB | 1..1002 | 17..1018 | 5010 | 100 | Plus |
| CG4287-RA | 1002 | CG4287-PA | 1..1002 | 17..1018 | 5010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-RB | 1644 | CG4287-RB | 261..1273 | 6..1018 | 5035 | 99.8 | Plus |
| CG4287-RA | 1648 | CG4287-RA | 275..1277 | 16..1018 | 5015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15962538..15963540 | 1018..16 | 5015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:18:25 has no hits.
BS07145.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:51 Download gff for
BS07145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RA | 1..1002 | 17..1018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:22 Download gff for
BS07145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RA | 248..1259 | 7..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:27 Download gff for
BS07145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RB | 254..1254 | 17..1017 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:51 Download gff for
BS07145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RA | 248..1259 | 7..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:13 Download gff for
BS07145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RB | 272..1272 | 17..1017 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:13 Download gff for
BS07145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15962539..15963539 | 17..1017 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:27 Download gff for
BS07145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11788261..11789261 | 17..1017 | 100 | | Minus |
BS07145.pep Sequence
Translation from 16 to 1017
> BS07145.pep
MDNSALMPQASGRHMPPEELAMQALTKQLYKSRLFRGYYMERCLVEQVSG
YRDVVVLQRSERELEKLLHSSAGQLQKFYQRFVPNMWVGITYGSYGSYQH
KADPGQLETCIWTEMNDLAFGEYWFSIKTLRFRDHEVQFKLKMIRPVEPE
LMATPRRSLILNRSSPVKAITAGGENSSSKPDEVAEQIQLGLNDFLAVLQ
QWGDGVKQTVYDFMTNDVNKRNILGTIRFLGLLIFSALGGAALALRFLGV
FAVRFLFELSRFTHTATPIVFKLIEFLNKIVGAIFILLTMIWKDIVTRGH
PEPKQQQLHLEASSRFKSIQYERSEPNRRSPRW*
BS07145.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-PB | 333 | CG4287-PB | 1..333 | 1..333 | 1726 | 100 | Plus |
| CG4287-PA | 333 | CG4287-PA | 1..333 | 1..333 | 1726 | 100 | Plus |
