Clone BS07146 Report

Search the DGRC for BS07146

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptGasz-RA
Protein status:BS07146.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07146.3prime Sequence

903 bp (854 high quality bases) assembled on 2006-01-06

> BS07146.3prime
ATGGTCTAGAAAGCTTCTATGAGAACCACTTGCACTTGAGGCAAATGAAA
ACTGAGATTCCAAGTATAATGGTGGTGTACTTGAAGTAGCTGCGCACCTT
TTTGCGTTTTCGCTCTGCGAGTATTTCGTTGAAGTCAATGAACAAGGGAT
TCTGAGAGGGGCTAAAGGAACCAAGATATTTGACTGTCTTTGTGATTTGG
TTGAGTACATCTCGATAGCCCTGAAGGTTGCTTTTCATCGCAGCCACCTG
CATCTCCGAAGGTTGCCCCATTTTATTGTGCTCCTGGTTTTTGAGGATGA
AGCGCAGGGAGGCCTGAATAATGACCAAGTGTTGCAGATGACTTGCGGTG
ATCAGTAGGATCTCATAGAAGTTGTTCATCTCATCCTTTTTGACCCGAGC
TATCGACGAGTTGCTCCAATGATGAAGATGAAAGTCAAGAATGCCCGTCA
GTATCTTGTGACGGAAGATGGGATACTCGATGCCGATCTCGCGAAGTGAC
TGCTCATCCATGACGAGGAAATCTGCCAGCGAGATCCTCGCAATGGCAAA
GTATTGAACCATGTTGCCAATATTGATGGCCTCCAGTATGCCGTTAAGTT
CTTGAAAATATTCCGGGCAATCGCTCTTAAGGAAGATGCGTGGAATGTGA
TCCCTTAGCGTGTTGTAGCCCAGGAAGTGCGTCGGCACTAGGTAAGTGGA
GGCTGGTCGCGGCAGGATCTCCAGCAGGTCGTAGTATCCATGGCACTCCG
CCACCTGGGTGGGCGTGTAGCCTTTGTTGTTGGCTATCGTGGCATTCGCG
CCCGCCTCCACCAACAGCTTGACCACTTCCACGTGATTTTTCTCGATGGC
ATGAAAGATGGCAGTGCAGCCCTGATTATCCACAGCATCGAAACTAGCAT
CCT

BS07146.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2183-PA 1386 CG2183-RA 500..1386 903..17 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
Gasz-RA 1908 CG2183-RA 595..1481 903..17 4435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8168605..8169073 903..435 2345 100 Minus
2R 25286936 2R 8169245..8169440 371..176 980 100 Minus
2R 25286936 2R 8169504..8169662 175..17 795 100 Minus
2R 25286936 2R 8169129..8169191 434..372 315 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:00:18 has no hits.

BS07146.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:40 Download gff for BS07146.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2183-PA 500..1386 17..903 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:50:29 Download gff for BS07146.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2183-PA 500..1386 17..903 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:00:54 Download gff for BS07146.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2183-RA 595..1481 17..903 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:16 Download gff for BS07146.3prime
Subject Subject Range Query Range Percent Splice Strand
Gasz-RA 595..1481 17..903 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:16 Download gff for BS07146.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8168605..8169073 435..903 100 -> Minus
2R 8169129..8169191 372..434 100 -> Minus
2R 8169245..8169440 176..371 100 -> Minus
2R 8169504..8169662 17..175 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:00:54 Download gff for BS07146.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4056110..4056578 435..903 100 -> Minus
arm_2R 4056634..4056696 372..434 100 -> Minus
arm_2R 4056750..4056945 176..371 100 -> Minus
arm_2R 4057009..4057167 17..175 100   Minus

BS07146.5prime Sequence

931 bp (815 high quality bases) assembled on 2006-01-06

> BS07146.5prime
GAAGTTATCAGTCGACATGATGAGCAACCTTTGCAAATACGGACCGCCCC
CAGATTCCGACTCTGATAGCAGCTACGATGGATTCTACTTCTCGGATAAG
GTGAAACGCTCGAAACCAGCTCCTTACGTGGATCCCGAGCAAAAGCTCTA
CGATGCAGTCGTCGCTGGGGATCTCAAGACGATGCAGGAGGAGATGCGCA
AACTCGTCCTCCAAGTGGATCAGCCAGTAAAAGGTGGTCTTAACTTACTG
ATGCTCGCCTGTCGCGAGGGCCACTACAAAATAGTTGAATGGCTGCTGGA
AAGGGCAGGGGCCAACGTGAATCGGCAGCTGGATTCCTTGATGCCGCTGA
TGATGGCCTGCAATACCACCCACAAGGATCCGTGCCTGGCGGAGAGAATT
GTGGGCCTGCTCTTGCGGCACGGAGCCGTGATCAATGTTTCGGAAAAATA
TGGAATGACACCCTTTATGTTCGCCTGCCAAAATGGCTTTGCCGGCGTTG
TGCGTCTGCTTATTAAGGATGCTAGTTTCGATGCTGTGGATAATCAGGGC
TGCACTGCCATCTTTCATGCCATCGAGAAAAATCACGTGGAAGTGGTCAA
GCTGTTGGTGGAGGCGGGCGCGAATGCCACGATAGCCAACAACAAAGGCT
ACACGCCCACCCAGGTGGCGGAGTGCCATGGATACTACGACCTGCTGGAG
ATCCTGCCGCGACCAGCCTCCACTTACCTAGTGCCGACGCACTTCCTGGG
CTACAACACGCTAAGGGATCACATTCCACGCATCTTCCTTAAGAGCGATT
GCCCGGAATATTTTCAAGAACTTAACGGCATACTGGAGGCCATCAATATT
GGGCACATGGTTCAATACTTTGCCATTGCGAGGATCTCGCTGGGAGATTT
CCTCGTCATGGATGAGCAGTCACTTCGCGAG

BS07146.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2183-PA 1386 CG2183-RA 1..915 17..931 4500 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Gasz-RA 1908 CG2183-RA 96..1010 17..931 4530 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8168188..8169020 99..931 4120 99.6 Plus
2R 25286936 2R 8168043..8168128 17..102 430 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:36:18 has no hits.

BS07146.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:41 Download gff for BS07146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2183-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:50:31 Download gff for BS07146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2183-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:26:27 Download gff for BS07146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2183-RA 96..1010 17..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:33 Download gff for BS07146.5prime
Subject Subject Range Query Range Percent Splice Strand
Gasz-RA 96..1010 17..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:33 Download gff for BS07146.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8168043..8168126 17..100 100 -> Plus
2R 8168190..8169020 101..931 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:26:27 Download gff for BS07146.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4055548..4055631 17..100 100 -> Plus
arm_2R 4055695..4056525 101..931 99   Plus

BS07146.complete Sequence

1418 bp (1418 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635745

> BS07146.complete
GAAGTTATCAGTCGACATGATGAGCAACCTTTGCAAATACGGACCGCCCC
CAGATTCCGACTCTGATAGCAGCTACGATGGATTCTACTTCTCGGATAAG
GTGAAACGCTCGAAACCAGCTCCTTACGTGGATCCCGAGCAAAAGCTCTA
CGATGCAGTCGTCGCTGGGGATCTCAAGACGATGCAGGAGGAGATGCGCA
AACTCGTCCTCCAAGTGGATCAGCCAGTAAAAGGTGGTCTTAACTTACTG
ATGCTCGCCTGTCGCGAGGGCCACTACAAAATAGTTGAATGGCTGCTGGA
AAGGGCAGGGGCCAACGTGAATCGGCAGCTGGATTCCTTGATGCCGCTGA
TGATGGCCTGCAATACCACCCACAAGGATCCGTGCCTGGCGGAGAGAATT
GTGGGCCTGCTCTTGCGGCACGGAGCCGTGATCAATGTTTCGGAAAAATA
TGGAATGACACCCTTTATGTTCGCCTGCCAAAATGGCTTTGCCGGCGTTG
TGCGTCTGCTTATTAAGGATGCTAGTTTCGATGCTGTGGATAATCAGGGC
TGCACTGCCATCTTTCATGCCATCGAGAAAAATCACGTGGAAGTGGTCAA
GCTGTTGGTGGAGGCGGGCGCGAATGCCACGATAGCCAACAACAAAGGCT
ACACGCCCACCCAGGTGGCGGAGTGCCATGGATACTACGACCTGCTGGAG
ATCCTGCCGCGACCAGCCTCCACTTACCTAGTGCCGACGCACTTCCTGGG
CTACAACACGCTAAGGGATCACATTCCACGCATCTTCCTTAAGAGCGATT
GCCCGGAATATTTTCAAGAACTTAACGGCATACTGGAGGCCATCAATATT
GGCAACATGGTTCAATACTTTGCCATTGCGAGGATCTCGCTGGCAGATTT
CCTCGTCATGGATGAGCAGTCACTTCGCGAGATCGGCATCGAGTATCCCA
TCTTCCGTCACAAGATACTGACGGGCATTCTTGACTTTCATCTTCATCAT
TGGAGCAACTCGTCGATAGCTCGGGTCAAAAAGGATGAGATGAACAACTT
CTATGAGATCCTACTGATCACCGCAAGTCATCTGCAACACTTGGTCATTA
TTCAGGCCTCCCTGCGCTTCATCCTCAAAAACCAGGAGCACAATAAAATG
GGGCAACCTTCGGAGATGCAGGTGGCTGCGATGAAAAGCAACCTTCAGGG
CTATCGAGATGTACTCAACCAAATCACAAAGACAGTCAAATATCTTGGTT
CCTTTAGCCCCTCTCAGAATCCCTTGTTCATTGACTTCAACGAAATACTC
GCAGAGCGAAAACGCAAAAAGGTGCGCAGCTACTTCAAGTACACCACCAT
TATACTTGGAATCTCAGTTTTCATTTGCCTCAAGTGCAAGTGGTTCTCAT
AGAAGCTTTCTAGACCAT

BS07146.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
Gasz-RA 1386 CG2183-PA 1..1386 17..1402 6930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
Gasz-RA 1908 CG2183-RA 96..1481 17..1402 6930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8168188..8169073 99..984 4430 100 Plus
2R 25286936 2R 8169245..8169440 1048..1243 980 100 Plus
2R 25286936 2R 8169504..8169662 1244..1402 795 100 Plus
2R 25286936 2R 8168043..8168128 17..102 430 100 Plus
2R 25286936 2R 8169129..8169191 985..1047 315 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:08:20 has no hits.

BS07146.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:35 Download gff for BS07146.complete
Subject Subject Range Query Range Percent Splice Strand
CG2183-RA 1..1386 17..1402 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:02 Download gff for BS07146.complete
Subject Subject Range Query Range Percent Splice Strand
CG2183-RA 97..1482 17..1402 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:51 Download gff for BS07146.complete
Subject Subject Range Query Range Percent Splice Strand
CG2183-RA 96..1481 17..1402 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:35 Download gff for BS07146.complete
Subject Subject Range Query Range Percent Splice Strand
CG2183-RA 97..1482 17..1402 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:40 Download gff for BS07146.complete
Subject Subject Range Query Range Percent Splice Strand
Gasz-RA 96..1481 17..1402 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:40 Download gff for BS07146.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8169245..8169440 1048..1243 100 -> Plus
2R 8169504..8169662 1244..1402 100   Plus
2R 8168043..8168126 17..100 100 -> Plus
2R 8168190..8169073 101..984 100 -> Plus
2R 8169129..8169191 985..1047 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:51 Download gff for BS07146.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4055548..4055631 17..100 100 -> Plus
arm_2R 4055695..4056578 101..984 100 -> Plus
arm_2R 4056634..4056696 985..1047 100 -> Plus
arm_2R 4056750..4056945 1048..1243 100 -> Plus
arm_2R 4057009..4057167 1244..1402 100   Plus

BS07146.pep Sequence

Translation from 16 to 1401

> BS07146.pep
MMSNLCKYGPPPDSDSDSSYDGFYFSDKVKRSKPAPYVDPEQKLYDAVVA
GDLKTMQEEMRKLVLQVDQPVKGGLNLLMLACREGHYKIVEWLLERAGAN
VNRQLDSLMPLMMACNTTHKDPCLAERIVGLLLRHGAVINVSEKYGMTPF
MFACQNGFAGVVRLLIKDASFDAVDNQGCTAIFHAIEKNHVEVVKLLVEA
GANATIANNKGYTPTQVAECHGYYDLLEILPRPASTYLVPTHFLGYNTLR
DHIPRIFLKSDCPEYFQELNGILEAINIGNMVQYFAIARISLADFLVMDE
QSLREIGIEYPIFRHKILTGILDFHLHHWSNSSIARVKKDEMNNFYEILL
ITASHLQHLVIIQASLRFILKNQEHNKMGQPSEMQVAAMKSNLQGYRDVL
NQITKTVKYLGSFSPSQNPLFIDFNEILAERKRKKVRSYFKYTTIILGIS
VFICLKCKWFS*

BS07146.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
Gasz-PA 461 CG2183-PA 1..461 1..461 2412 100 Plus
mask-PF 3623 CG33106-PF 207..360 74..230 203 36 Plus
mask-PD 3636 CG33106-PD 220..373 74..230 203 36 Plus
mask-PE 4000 CG33106-PE 585..738 74..230 203 36 Plus
mask-PB 4001 CG33106-PB 585..738 74..230 203 36 Plus
mask-PF 3623 CG33106-PF 218..426 22..230 171 30.8 Plus
mask-PD 3636 CG33106-PD 231..439 22..230 171 30.8 Plus
mask-PE 4000 CG33106-PE 596..804 22..230 171 30.8 Plus
mask-PF 3623 CG33106-PF 2068..2224 72..230 167 31.7 Plus
mask-PD 3636 CG33106-PD 2081..2237 72..230 167 31.7 Plus
mask-PE 4000 CG33106-PE 2445..2601 72..230 167 31.7 Plus
mask-PF 3623 CG33106-PF 1939..2089 78..230 157 31 Plus
mask-PD 3636 CG33106-PD 1952..2102 78..230 157 31 Plus
mask-PE 4000 CG33106-PE 2316..2466 78..230 157 31 Plus