Clone Sequence Records
BS07146.3prime Sequence
903 bp (854 high quality bases) assembled on 2006-01-06
> BS07146.3prime
ATGGTCTAGAAAGCTTCTATGAGAACCACTTGCACTTGAGGCAAATGAAA
ACTGAGATTCCAAGTATAATGGTGGTGTACTTGAAGTAGCTGCGCACCTT
TTTGCGTTTTCGCTCTGCGAGTATTTCGTTGAAGTCAATGAACAAGGGAT
TCTGAGAGGGGCTAAAGGAACCAAGATATTTGACTGTCTTTGTGATTTGG
TTGAGTACATCTCGATAGCCCTGAAGGTTGCTTTTCATCGCAGCCACCTG
CATCTCCGAAGGTTGCCCCATTTTATTGTGCTCCTGGTTTTTGAGGATGA
AGCGCAGGGAGGCCTGAATAATGACCAAGTGTTGCAGATGACTTGCGGTG
ATCAGTAGGATCTCATAGAAGTTGTTCATCTCATCCTTTTTGACCCGAGC
TATCGACGAGTTGCTCCAATGATGAAGATGAAAGTCAAGAATGCCCGTCA
GTATCTTGTGACGGAAGATGGGATACTCGATGCCGATCTCGCGAAGTGAC
TGCTCATCCATGACGAGGAAATCTGCCAGCGAGATCCTCGCAATGGCAAA
GTATTGAACCATGTTGCCAATATTGATGGCCTCCAGTATGCCGTTAAGTT
CTTGAAAATATTCCGGGCAATCGCTCTTAAGGAAGATGCGTGGAATGTGA
TCCCTTAGCGTGTTGTAGCCCAGGAAGTGCGTCGGCACTAGGTAAGTGGA
GGCTGGTCGCGGCAGGATCTCCAGCAGGTCGTAGTATCCATGGCACTCCG
CCACCTGGGTGGGCGTGTAGCCTTTGTTGTTGGCTATCGTGGCATTCGCG
CCCGCCTCCACCAACAGCTTGACCACTTCCACGTGATTTTTCTCGATGGC
ATGAAAGATGGCAGTGCAGCCCTGATTATCCACAGCATCGAAACTAGCAT
CCT
BS07146.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2183-PA | 1386 | CG2183-RA | 500..1386 | 903..17 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasz-RA | 1908 | CG2183-RA | 595..1481 | 903..17 | 4435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8168605..8169073 | 903..435 | 2345 | 100 | Minus |
2R | 25286936 | 2R | 8169245..8169440 | 371..176 | 980 | 100 | Minus |
2R | 25286936 | 2R | 8169504..8169662 | 175..17 | 795 | 100 | Minus |
2R | 25286936 | 2R | 8169129..8169191 | 434..372 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:00:18 has no hits.
BS07146.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:40 Download gff for
BS07146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-PA | 500..1386 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:50:29 Download gff for
BS07146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-PA | 500..1386 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:00:54 Download gff for
BS07146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-RA | 595..1481 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:16 Download gff for
BS07146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasz-RA | 595..1481 | 17..903 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:16 Download gff for
BS07146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8168605..8169073 | 435..903 | 100 | -> | Minus |
2R | 8169129..8169191 | 372..434 | 100 | -> | Minus |
2R | 8169245..8169440 | 176..371 | 100 | -> | Minus |
2R | 8169504..8169662 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:00:54 Download gff for
BS07146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4056110..4056578 | 435..903 | 100 | -> | Minus |
arm_2R | 4056634..4056696 | 372..434 | 100 | -> | Minus |
arm_2R | 4056750..4056945 | 176..371 | 100 | -> | Minus |
arm_2R | 4057009..4057167 | 17..175 | 100 | | Minus |
BS07146.5prime Sequence
931 bp (815 high quality bases) assembled on 2006-01-06
> BS07146.5prime
GAAGTTATCAGTCGACATGATGAGCAACCTTTGCAAATACGGACCGCCCC
CAGATTCCGACTCTGATAGCAGCTACGATGGATTCTACTTCTCGGATAAG
GTGAAACGCTCGAAACCAGCTCCTTACGTGGATCCCGAGCAAAAGCTCTA
CGATGCAGTCGTCGCTGGGGATCTCAAGACGATGCAGGAGGAGATGCGCA
AACTCGTCCTCCAAGTGGATCAGCCAGTAAAAGGTGGTCTTAACTTACTG
ATGCTCGCCTGTCGCGAGGGCCACTACAAAATAGTTGAATGGCTGCTGGA
AAGGGCAGGGGCCAACGTGAATCGGCAGCTGGATTCCTTGATGCCGCTGA
TGATGGCCTGCAATACCACCCACAAGGATCCGTGCCTGGCGGAGAGAATT
GTGGGCCTGCTCTTGCGGCACGGAGCCGTGATCAATGTTTCGGAAAAATA
TGGAATGACACCCTTTATGTTCGCCTGCCAAAATGGCTTTGCCGGCGTTG
TGCGTCTGCTTATTAAGGATGCTAGTTTCGATGCTGTGGATAATCAGGGC
TGCACTGCCATCTTTCATGCCATCGAGAAAAATCACGTGGAAGTGGTCAA
GCTGTTGGTGGAGGCGGGCGCGAATGCCACGATAGCCAACAACAAAGGCT
ACACGCCCACCCAGGTGGCGGAGTGCCATGGATACTACGACCTGCTGGAG
ATCCTGCCGCGACCAGCCTCCACTTACCTAGTGCCGACGCACTTCCTGGG
CTACAACACGCTAAGGGATCACATTCCACGCATCTTCCTTAAGAGCGATT
GCCCGGAATATTTTCAAGAACTTAACGGCATACTGGAGGCCATCAATATT
GGGCACATGGTTCAATACTTTGCCATTGCGAGGATCTCGCTGGGAGATTT
CCTCGTCATGGATGAGCAGTCACTTCGCGAG
BS07146.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2183-PA | 1386 | CG2183-RA | 1..915 | 17..931 | 4500 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasz-RA | 1908 | CG2183-RA | 96..1010 | 17..931 | 4530 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8168188..8169020 | 99..931 | 4120 | 99.6 | Plus |
2R | 25286936 | 2R | 8168043..8168128 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:36:18 has no hits.
BS07146.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:03:41 Download gff for
BS07146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:50:31 Download gff for
BS07146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:26:27 Download gff for
BS07146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-RA | 96..1010 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:33 Download gff for
BS07146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasz-RA | 96..1010 | 17..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:33 Download gff for
BS07146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8168043..8168126 | 17..100 | 100 | -> | Plus |
2R | 8168190..8169020 | 101..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:26:27 Download gff for
BS07146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4055548..4055631 | 17..100 | 100 | -> | Plus |
arm_2R | 4055695..4056525 | 101..931 | 99 | | Plus |
BS07146.complete Sequence
1418 bp (1418 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635745
> BS07146.complete
GAAGTTATCAGTCGACATGATGAGCAACCTTTGCAAATACGGACCGCCCC
CAGATTCCGACTCTGATAGCAGCTACGATGGATTCTACTTCTCGGATAAG
GTGAAACGCTCGAAACCAGCTCCTTACGTGGATCCCGAGCAAAAGCTCTA
CGATGCAGTCGTCGCTGGGGATCTCAAGACGATGCAGGAGGAGATGCGCA
AACTCGTCCTCCAAGTGGATCAGCCAGTAAAAGGTGGTCTTAACTTACTG
ATGCTCGCCTGTCGCGAGGGCCACTACAAAATAGTTGAATGGCTGCTGGA
AAGGGCAGGGGCCAACGTGAATCGGCAGCTGGATTCCTTGATGCCGCTGA
TGATGGCCTGCAATACCACCCACAAGGATCCGTGCCTGGCGGAGAGAATT
GTGGGCCTGCTCTTGCGGCACGGAGCCGTGATCAATGTTTCGGAAAAATA
TGGAATGACACCCTTTATGTTCGCCTGCCAAAATGGCTTTGCCGGCGTTG
TGCGTCTGCTTATTAAGGATGCTAGTTTCGATGCTGTGGATAATCAGGGC
TGCACTGCCATCTTTCATGCCATCGAGAAAAATCACGTGGAAGTGGTCAA
GCTGTTGGTGGAGGCGGGCGCGAATGCCACGATAGCCAACAACAAAGGCT
ACACGCCCACCCAGGTGGCGGAGTGCCATGGATACTACGACCTGCTGGAG
ATCCTGCCGCGACCAGCCTCCACTTACCTAGTGCCGACGCACTTCCTGGG
CTACAACACGCTAAGGGATCACATTCCACGCATCTTCCTTAAGAGCGATT
GCCCGGAATATTTTCAAGAACTTAACGGCATACTGGAGGCCATCAATATT
GGCAACATGGTTCAATACTTTGCCATTGCGAGGATCTCGCTGGCAGATTT
CCTCGTCATGGATGAGCAGTCACTTCGCGAGATCGGCATCGAGTATCCCA
TCTTCCGTCACAAGATACTGACGGGCATTCTTGACTTTCATCTTCATCAT
TGGAGCAACTCGTCGATAGCTCGGGTCAAAAAGGATGAGATGAACAACTT
CTATGAGATCCTACTGATCACCGCAAGTCATCTGCAACACTTGGTCATTA
TTCAGGCCTCCCTGCGCTTCATCCTCAAAAACCAGGAGCACAATAAAATG
GGGCAACCTTCGGAGATGCAGGTGGCTGCGATGAAAAGCAACCTTCAGGG
CTATCGAGATGTACTCAACCAAATCACAAAGACAGTCAAATATCTTGGTT
CCTTTAGCCCCTCTCAGAATCCCTTGTTCATTGACTTCAACGAAATACTC
GCAGAGCGAAAACGCAAAAAGGTGCGCAGCTACTTCAAGTACACCACCAT
TATACTTGGAATCTCAGTTTTCATTTGCCTCAAGTGCAAGTGGTTCTCAT
AGAAGCTTTCTAGACCAT
BS07146.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasz-RA | 1386 | CG2183-PA | 1..1386 | 17..1402 | 6930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasz-RA | 1908 | CG2183-RA | 96..1481 | 17..1402 | 6930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8168188..8169073 | 99..984 | 4430 | 100 | Plus |
2R | 25286936 | 2R | 8169245..8169440 | 1048..1243 | 980 | 100 | Plus |
2R | 25286936 | 2R | 8169504..8169662 | 1244..1402 | 795 | 100 | Plus |
2R | 25286936 | 2R | 8168043..8168128 | 17..102 | 430 | 100 | Plus |
2R | 25286936 | 2R | 8169129..8169191 | 985..1047 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:08:20 has no hits.
BS07146.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:35 Download gff for
BS07146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-RA | 1..1386 | 17..1402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:02 Download gff for
BS07146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-RA | 97..1482 | 17..1402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:51 Download gff for
BS07146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-RA | 96..1481 | 17..1402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:35 Download gff for
BS07146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2183-RA | 97..1482 | 17..1402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:40 Download gff for
BS07146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gasz-RA | 96..1481 | 17..1402 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:40 Download gff for
BS07146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8169245..8169440 | 1048..1243 | 100 | -> | Plus |
2R | 8169504..8169662 | 1244..1402 | 100 | | Plus |
2R | 8168043..8168126 | 17..100 | 100 | -> | Plus |
2R | 8168190..8169073 | 101..984 | 100 | -> | Plus |
2R | 8169129..8169191 | 985..1047 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:51 Download gff for
BS07146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4055548..4055631 | 17..100 | 100 | -> | Plus |
arm_2R | 4055695..4056578 | 101..984 | 100 | -> | Plus |
arm_2R | 4056634..4056696 | 985..1047 | 100 | -> | Plus |
arm_2R | 4056750..4056945 | 1048..1243 | 100 | -> | Plus |
arm_2R | 4057009..4057167 | 1244..1402 | 100 | | Plus |
BS07146.pep Sequence
Translation from 16 to 1401
> BS07146.pep
MMSNLCKYGPPPDSDSDSSYDGFYFSDKVKRSKPAPYVDPEQKLYDAVVA
GDLKTMQEEMRKLVLQVDQPVKGGLNLLMLACREGHYKIVEWLLERAGAN
VNRQLDSLMPLMMACNTTHKDPCLAERIVGLLLRHGAVINVSEKYGMTPF
MFACQNGFAGVVRLLIKDASFDAVDNQGCTAIFHAIEKNHVEVVKLLVEA
GANATIANNKGYTPTQVAECHGYYDLLEILPRPASTYLVPTHFLGYNTLR
DHIPRIFLKSDCPEYFQELNGILEAINIGNMVQYFAIARISLADFLVMDE
QSLREIGIEYPIFRHKILTGILDFHLHHWSNSSIARVKKDEMNNFYEILL
ITASHLQHLVIIQASLRFILKNQEHNKMGQPSEMQVAAMKSNLQGYRDVL
NQITKTVKYLGSFSPSQNPLFIDFNEILAERKRKKVRSYFKYTTIILGIS
VFICLKCKWFS*
BS07146.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gasz-PA | 461 | CG2183-PA | 1..461 | 1..461 | 2412 | 100 | Plus |
mask-PF | 3623 | CG33106-PF | 207..360 | 74..230 | 203 | 36 | Plus |
mask-PD | 3636 | CG33106-PD | 220..373 | 74..230 | 203 | 36 | Plus |
mask-PE | 4000 | CG33106-PE | 585..738 | 74..230 | 203 | 36 | Plus |
mask-PB | 4001 | CG33106-PB | 585..738 | 74..230 | 203 | 36 | Plus |
mask-PF | 3623 | CG33106-PF | 218..426 | 22..230 | 171 | 30.8 | Plus |
mask-PD | 3636 | CG33106-PD | 231..439 | 22..230 | 171 | 30.8 | Plus |
mask-PE | 4000 | CG33106-PE | 596..804 | 22..230 | 171 | 30.8 | Plus |
mask-PF | 3623 | CG33106-PF | 2068..2224 | 72..230 | 167 | 31.7 | Plus |
mask-PD | 3636 | CG33106-PD | 2081..2237 | 72..230 | 167 | 31.7 | Plus |
mask-PE | 4000 | CG33106-PE | 2445..2601 | 72..230 | 167 | 31.7 | Plus |
mask-PF | 3623 | CG33106-PF | 1939..2089 | 78..230 | 157 | 31 | Plus |
mask-PD | 3636 | CG33106-PD | 1952..2102 | 78..230 | 157 | 31 | Plus |
mask-PE | 4000 | CG33106-PE | 2316..2466 | 78..230 | 157 | 31 | Plus |