Clone Sequence Records
BS07156.3prime Sequence
961 bp (909 high quality bases) assembled on 2006-01-06
> BS07156.3prime
ATGGTCTAGAAAGCTTTTACTCGTGGGCCTGAGACTCCTGCTGGACGAGC
TTGAAGCGCCGGGGTGACTTGATGGATCCCTGGTGTCCGAATAGCGCCTT
CAGCTGTCCATTGTGCGTAAGGACCTTGCGAATATAGCGCGACACGAGGA
TCTGCGGACGCGCTTGCCACTCGTTCATGACCTCCTTGGGCGCGTTGACC
TGATCCCCATTGAGGCGGTTCAGCAGGGCGACACACACCACCGCTGCCTT
GATGCCGGCATGGTGGGTCAGGGCCGCAAAGATGGTGCTCTCCATCTCGA
TGTTGACCACGCCGTTCTCGCGCAGCTTCTCCAGATAGGCCATCTTCTCG
TTCTCGCTGAAATCACAGAATGCGCCGTCCAAACGACCCTGGCCCTCGTA
GAAATCGTTGGTGCACAGCGTCTTGCCAATAATGGTATCGTACGGATCAT
CGGGACTGGCCAGGGACTTTAGCTCACGGGCCAGCTTTTTGTCCAGCTTG
GCAGGACGATGGATGGTCTTGCCGAGAATGGTAAACTCATGGGAGTTCCT
CAGCTGCCCATCGAGGGCATCTTCGGTGATGATGACGGTGCCGCCGTCGA
CGCCAATTCCTCCGCACGTTCCTATCCTGATGAAGACGGGATCCTTGCAC
TTGGCGTGGTACATCAGCTTGATCATCTCATGCATCAGGATGCTGACCGA
GGGCGTACCCATGCCATGGCTGACGCACAGCACCGGTCCCACTTTGTACA
TGGAGTAGCGATACGAATAGGCGCTGATGTCCTGCAGCTGGGTGCCCGCT
GGCAACTTGTAGCCAATCTCGTTCATTATGAAATGGGCAAAATTCTCCAT
GCGCTTTGGTGTGCCGCCCATGCAAACGAACTTAACGTCGCCAAACATCT
CCTGCAGGTCGTGGCTCTCGCTGCCCAAGGCCAGGTGATAGAGGATATCC
TGGTCCATGAG
BS07156.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6330-PB | 1044 | CG6330-RB | 100..1044 | 961..17 | 4725 | 100 | Minus |
CG6330-PA | 1107 | CG6330-RA | 163..1107 | 961..17 | 4725 | 100 | Minus |
CG3788-PA | 1137 | CG3788-RA | 472..518 | 673..627 | 185 | 95.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:45:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6330-RA | 1541 | CG6330-RA | 295..1240 | 961..16 | 4730 | 100 | Minus |
CG6330-RB | 2075 | CG6330-RB | 398..1343 | 961..16 | 4730 | 100 | Minus |
CG3788-RB | 1758 | CG3788-RB | 928..1104 | 755..579 | 345 | 79.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26950638..26951009 | 161..532 | 1860 | 100 | Plus |
3R | 32079331 | 3R | 26951072..26951428 | 533..889 | 1755 | 99.4 | Plus |
3R | 32079331 | 3R | 26950424..26950569 | 16..161 | 730 | 100 | Plus |
3R | 32079331 | 3R | 26951775..26951855 | 881..961 | 405 | 100 | Plus |
2R | 25286936 | 2R | 22932746..22932922 | 579..755 | 345 | 79.7 | Plus |
Blast to na_te.dros performed 2015-02-12 00:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 200..283 | 877..959 | 111 | 60.7 | Plus |
Tabor | 7345 | Tabor TABOR 7345bp | 7039..7122 | 877..959 | 111 | 60.7 | Plus |
BS07156.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:01 Download gff for
BS07156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-PB | 100..1044 | 17..961 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:50:55 Download gff for
BS07156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-PA | 163..1107 | 17..961 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:46:36 Download gff for
BS07156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RB | 398..1350 | 9..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:15:18 Download gff for
BS07156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RB | 398..1350 | 9..961 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:15:18 Download gff for
BS07156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26950417..26950568 | 9..160 | 97 | <- | Plus |
3R | 26950638..26951009 | 161..532 | 100 | <- | Plus |
3R | 26951072..26951419 | 533..880 | 100 | <- | Plus |
3R | 26951775..26951855 | 881..961 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:46:36 Download gff for
BS07156.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22776139..22776290 | 9..160 | 97 | <- | Plus |
arm_3R | 22776360..22776731 | 161..532 | 100 | <- | Plus |
arm_3R | 22776794..22777141 | 533..880 | 100 | <- | Plus |
arm_3R | 22777497..22777577 | 881..961 | 100 | | Plus |
BS07156.5prime Sequence
949 bp (743 high quality bases) assembled on 2006-01-06
> BS07156.5prime
GAAGTTATCAGTCGACATGCCGCCCACCATAACCGATAATCAGACGCACG
ACTTTAAGGCCCACTACGATTGCGCCCACAGGTCCTCGCTGCAGGACGAC
GAGACGGACGATGCGTACGTGAAAAGGATAACGCGGTACTCCGATGGAAC
CGTCAAATTGCGCAACTCGAACATTGAGCTCATGGACCAGGATATCCTCT
ATCACCTGGCCTTGGGCAGCGAGAGCCACGACCTGCAGGAGATGTTTGGC
GACGTTAAGTTCGTTTGCATGGGCGGCACACCAAAGCGCATGGAGAATTT
TGCCCATTTCATAATGAACGAGATTGGCTACAAGTTGCCAGCGGGCACCC
AGCTGCAGGACATCAGCGCCTATTCGTATCGCTACTCCATGTACAAAGTG
GGACCGGTGCTGTGCGTCAGCCATGGCATGGGTACGCCCTCGGTCAGCAT
CCTGATGCATGAGATGATCAAGCTGATGTACCACGCCAAGTGCAAGGATC
CCGTCTTCGTCAGGATAGGAACGTGCGGAGGAATTGGCGTCGACGGCGGC
ACCGTCATCATCACCGAAGATGCCCTCGATGGGCAGCTGAGGAACTCCCA
TGAGTTTACCATTCTCGGCAAGACCATCCATCGTCCTGCCAAGCTGGACA
AAAAGCTGGCCCGTGAGCTAAAGTCCCTGGCCAGTCCCGATGATCCGTAC
GATACCATTATTGGCAAGACGCTGTGCACCAACGATTTCTACGAGGGCCA
GGGTCGTTTGGACGGCGCATTCTGTGATTTCAGCGAGAACGAGAAGATGG
CCTATCTGGAGAAGCTGCGCGAGAACGGCGTGGTCAACATCGAGATGGAG
AGCACCATCTTTGCGGCCCTGACCCACCATGCCGGCATCANGGCAGCGGT
GGTGTGTGTCGCCCTGCTGAACCGCCTCAATGGGGATCAGGTCAACGCG
BS07156.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6330-PA | 1107 | CG6330-RA | 1..933 | 17..949 | 4621 | 99.7 | Plus |
CG6330-PB | 1044 | CG6330-RB | 57..870 | 136..949 | 4026 | 99.7 | Plus |
CG3788-PA | 1137 | CG3788-RA | 472..513 | 467..508 | 160 | 95.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6330-RA | 1541 | CG6330-RA | 132..1065 | 16..949 | 4644 | 99.8 | Plus |
CG6330-RB | 2075 | CG6330-RB | 355..1168 | 136..949 | 4044 | 99.8 | Plus |
CG3788-RB | 1758 | CG3788-RB | 928..1104 | 385..561 | 330 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26951072..26951428 | 607..251 | 1740 | 99.2 | Minus |
3R | 32079331 | 3R | 26950668..26951009 | 949..608 | 1699 | 99.7 | Minus |
3R | 32079331 | 3R | 26951775..26951899 | 259..135 | 625 | 100 | Minus |
3R | 32079331 | 3R | 26953001..26953123 | 138..16 | 615 | 100 | Minus |
2R | 25286936 | 2R | 22932746..22932922 | 561..385 | 330 | 79.1 | Minus |
Blast to na_te.dros performed 2015-02-13 08:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 200..283 | 263..181 | 111 | 60.7 | Minus |
Tabor | 7345 | Tabor TABOR 7345bp | 7039..7122 | 263..181 | 111 | 60.7 | Minus |
BS07156.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:02 Download gff for
BS07156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-PA | 1..933 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:50:56 Download gff for
BS07156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-PA | 1..933 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:58:33 Download gff for
BS07156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RA | 132..1065 | 16..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:25:12 Download gff for
BS07156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RA | 132..1065 | 16..949 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:25:12 Download gff for
BS07156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26950668..26951009 | 608..949 | 99 | <- | Minus |
3R | 26951072..26951419 | 260..607 | 99 | <- | Minus |
3R | 26951775..26951898 | 136..259 | 100 | <- | Minus |
3R | 26953004..26953123 | 16..135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:58:33 Download gff for
BS07156.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22776390..22776731 | 608..949 | 99 | <- | Minus |
arm_3R | 22776794..22777141 | 260..607 | 99 | <- | Minus |
arm_3R | 22777497..22777620 | 136..259 | 100 | <- | Minus |
arm_3R | 22778726..22778845 | 16..135 | 100 | | Minus |
BS07156.complete Sequence
1139 bp (1139 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ638799
> BS07156.complete
GAAGTTATCAGTCGACATGCCGCCCACCATAACCGATAATCAGACGCACG
ACTTTAAGGCCCACTACGATTGCGCCCACAGGTCCTCGCTGCAGGACGAC
GAGACGGACGATGCGTACGTGAAAAGGATAACGCGGTACTCCGATGGAAC
CGTCAAATTGCGCAACTCGAACATTGAGCTCATGGACCAGGATATCCTCT
ATCACCTGGCCTTGGGCAGCGAGAGCCACGACCTGCAGGAGATGTTTGGC
GACGTTAAGTTCGTTTGCATGGGCGGCACACCAAAGCGCATGGAGAATTT
TGCCCATTTCATAATGAACGAGATTGGCTACAAGTTGCCAGCGGGCACCC
AGCTGCAGGACATCAGCGCCTATTCGTATCGCTACTCCATGTACAAAGTG
GGACCGGTGCTGTGCGTCAGCCATGGCATGGGTACGCCCTCGGTCAGCAT
CCTGATGCATGAGATGATCAAGCTGATGTACCACGCCAAGTGCAAGGATC
CCGTCTTCATCAGGATAGGAACGTGCGGAGGAATTGGCGTCGACGGCGGC
ACCGTCATCATCACCGAAGATGCCCTCGATGGGCAGCTGAGGAACTCCCA
TGAGTTTACCATTCTCGGCAAGACCATCCATCGTCCTGCCAAGCTGGACA
AAAAGCTGGCCCGTGAGCTAAAGTCCCTGGCCAGTCCCGATGATCCGTAC
GATACCATTATTGGCAAGACGCTGTGCACCAACGATTTCTACGAGGGCCA
GGGTCGTTTGGACGGCGCATTCTGTGATTTCAGCGAGAACGAGAAGATGG
CCTATCTGGAGAAGCTGCGCGAGAACGGCGTGGTCAACATCGAGATGGAG
AGCACCATCTTTGCGGCCCTGACCCACCATGCCGGCATCAAGGCAGCGGT
GGTGTGTGTCGCCCTGCTGAACCGCCTCAATGGGGATCAGGTCAACGCGC
CCAAGGAGGTCATGAACGAGTGGCAAGCGCGTCCGCAGATCCTCGTGTCG
CGCTATATTCGCAAGGTCCTTACGCACAATGGACAGCTGAAGGCGCTATT
CGGACACCAGGGATCCATCAAGTCACCCCGGCGCTTCAAGCTCGTCCAGC
AGGAGTCTCAGGCCCACGAGTAAAAGCTTTCTAGACCAT
BS07156.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6330-RA | 1107 | CG6330-PA | 1..1107 | 17..1123 | 5535 | 100 | Plus |
CG6330-RB | 1044 | CG6330-PB | 57..1044 | 136..1123 | 4940 | 100 | Plus |
CG3788-RB | 1137 | CG3788-PB | 390..566 | 385..561 | 345 | 79.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6330-RA | 1541 | CG6330-RA | 132..1240 | 16..1124 | 5545 | 100 | Plus |
CG6330-RB | 2075 | CG6330-RB | 355..1343 | 136..1124 | 4945 | 100 | Plus |
CG3788-RB | 1758 | CG3788-RB | 928..1104 | 385..561 | 345 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26950638..26951009 | 979..608 | 1860 | 100 | Minus |
3R | 32079331 | 3R | 26951072..26951428 | 607..251 | 1755 | 99.4 | Minus |
3R | 32079331 | 3R | 26950424..26950569 | 1124..979 | 730 | 100 | Minus |
3R | 32079331 | 3R | 26951775..26951899 | 259..135 | 625 | 100 | Minus |
3R | 32079331 | 3R | 26953001..26953123 | 138..16 | 615 | 100 | Minus |
2R | 25286936 | 2R | 22932746..22932922 | 561..385 | 345 | 79.7 | Minus |
Blast to na_te.dros performed 2014-11-26 15:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 200..283 | 263..181 | 111 | 60.7 | Minus |
Tabor | 7345 | Tabor TABOR 7345bp | 7039..7122 | 263..181 | 111 | 60.7 | Minus |
BS07156.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:36 Download gff for
BS07156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RA | 1..1107 | 17..1123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:04 Download gff for
BS07156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RA | 130..1245 | 16..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:34 Download gff for
BS07156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RA | 133..1237 | 17..1121 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:36 Download gff for
BS07156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RA | 130..1245 | 16..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:16 Download gff for
BS07156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RA | 133..1237 | 17..1121 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:16 Download gff for
BS07156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26950638..26951009 | 608..979 | 100 | <- | Minus |
3R | 26950427..26950568 | 980..1121 | 100 | <- | Minus |
3R | 26951072..26951419 | 260..607 | 100 | <- | Minus |
3R | 26951775..26951898 | 136..259 | 100 | <- | Minus |
3R | 26953004..26953122 | 17..135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:34 Download gff for
BS07156.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22776149..22776290 | 980..1121 | 100 | <- | Minus |
arm_3R | 22776360..22776731 | 608..979 | 100 | <- | Minus |
arm_3R | 22776794..22777141 | 260..607 | 100 | <- | Minus |
arm_3R | 22777497..22777620 | 136..259 | 100 | <- | Minus |
arm_3R | 22778726..22778844 | 17..135 | 100 | | Minus |
BS07156.pep Sequence
Translation from 16 to 1122
> BS07156.pep
MPPTITDNQTHDFKAHYDCAHRSSLQDDETDDAYVKRITRYSDGTVKLRN
SNIELMDQDILYHLALGSESHDLQEMFGDVKFVCMGGTPKRMENFAHFIM
NEIGYKLPAGTQLQDISAYSYRYSMYKVGPVLCVSHGMGTPSVSILMHEM
IKLMYHAKCKDPVFIRIGTCGGIGVDGGTVIITEDALDGQLRNSHEFTIL
GKTIHRPAKLDKKLARELKSLASPDDPYDTIIGKTLCTNDFYEGQGRLDG
AFCDFSENEKMAYLEKLRENGVVNIEMESTIFAALTHHAGIKAAVVCVAL
LNRLNGDQVNAPKEVMNEWQARPQILVSRYIRKVLTHNGQLKALFGHQGS
IKSPRRFKLVQQESQAHE*
BS07156.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6330-PA | 368 | CG6330-PA | 1..368 | 1..368 | 1939 | 100 | Plus |
CG6330-PB | 347 | CG6330-PB | 10..347 | 23..368 | 1724 | 96 | Plus |
CG3788-PB | 378 | CG3788-PB | 57..346 | 50..338 | 928 | 59 | Plus |
CG3788-PA | 378 | CG3788-PA | 57..346 | 50..338 | 928 | 59 | Plus |
CG17224-PD | 300 | CG17224-PD | 2..298 | 42..335 | 693 | 45.2 | Plus |