Clone Sequence Records
BS07161.3prime Sequence
672 bp (671 high quality bases) assembled on 2006-01-06
> BS07161.3prime
ATGGTCTAGAAAGCTTTTAGCGCGCCTGGTTGAATGGGTTGTCTGGTGAC
TTGTTCCATTCCTTCATCAGAAGCTGCTTCCACTGGGACATGCGAAGGGA
AGGATTCTCAGCCTTAATGCGGGGCAGATTGTTGGCTTCAAAGGTCTTGT
AGGCGGCGCGCATTCGCTTCTCGGGATGCTTGTCCTCTTCGCTGTCATTT
ACACTGAGCACCACGATGGCCTCGTCAATGTTGGATGCCACATCCGTGTC
GGCCATGGATCGGTTCAGATTCTCCTCGATATGGTTTTGGACCACCACTC
GCGCGGCCATCGGCTTGTTGGCCTCGTTTATCGCCTCGATTACGCGCTGC
TTCTTCTCCATCTCCTCGAGAATCATCTGGCGGTTGATCTTGGCCAGCGG
CTGCTTTCGCTGCGTGTTAATGGATGACATTTCCTGGTCAAGCAGCGCTT
TGGCCTCAGCCTTCCGTTTGGCCGCCTCCGCCCGCTTGCGCTCCTCCTCG
TCCTTGCGCTGTTGTTTCTTGGCCAGATTCTTGTCGTCATCGCGCCACAG
GCGATCCTCCGCCTCCTTGCTCTTCTTCTCCTGCGTGGCCTTCTTGGTGG
CCTCCTTGCGCTCGCGGGCCTCCACCGCCTTCGAGTTGATTCCCATTTTC
TTTGGCATGTCGACTGATAACT
BS07161.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6013-PA | 642 | CG6013-RA | 1..642 | 658..17 | 3210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6013-RA | 844 | CG6013-RA | 69..710 | 658..17 | 3210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19031571..19032025 | 658..204 | 2275 | 100 | Minus |
3R | 32079331 | 3R | 19032087..19032275 | 205..17 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:10:31 has no hits.
BS07161.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:09 Download gff for
BS07161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:06 Download gff for
BS07161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:28 Download gff for
BS07161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 43..684 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:35 Download gff for
BS07161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 69..710 | 17..658 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:35 Download gff for
BS07161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19031571..19032025 | 204..658 | 100 | -> | Minus |
3R | 19032089..19032275 | 17..203 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:28 Download gff for
BS07161.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14857293..14857747 | 204..658 | 100 | -> | Minus |
arm_3R | 14857811..14857997 | 17..203 | 100 | | Minus |
BS07161.5prime Sequence
672 bp (671 high quality bases) assembled on 2006-01-06
> BS07161.5prime
GAAGTTATCAGTCGACATGCCAAAGAAAATGGGAATCAACTCGAAGGCGG
TGGAGGCCCGCGAGCGCAAGGAGGCCACCAAGAAGGCCACGCAGGAGAAG
AAGAGCAAGGAGGCGGAGGATCGCCTGTGGCGCGATGACGACAAGAATCT
GGCCAAGAAACAACAGCGCAAGGACGAGGAGGAGCGCAAGCGGGCGGAGG
CGGCCAAACGGAAGGCTGAGGCCAAAGCGCTGCTTGACCAGGAAATGTCA
TCCATTAACACGCAGCGAAAGCAGCCGCTGGCCAAGATCAACCGCCAGAT
GATTCTCGAGGAGATGGAGAAGAAGCAGCGCGTAATCGAGGCGATAAACG
AGGCCAACAAGCCGATGGCCGCGCGAGTGGTGGTCCAAAACCATATCGAG
GAGAATCTGAACCGATCCATGGCCGACACGGATGTGGCATCCAACATTGA
CGAGGCCATCGTGGTGCTCAGTGTAAATGACAGCGAAGAGGACAAGCATC
CCGAGAAGCGAATGCGCGCCGCCTACAAGACCTTTGAAGCCAACAATCTG
CCCCGCATTAAGGCTGAGAATCCTTCCCTTCGCATGTCCCAGTGGAAGCA
GCTTCTGATGAAGGAATGGAACAAGTCACCAGACAACCCATTCAACCAGG
CGCGCTAAAAGCTTTCTAGACC
BS07161.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6013-PA | 642 | CG6013-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6013-RA | 844 | CG6013-RA | 69..710 | 17..658 | 3210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19031571..19032025 | 17..471 | 2275 | 100 | Plus |
3R | 32079331 | 3R | 19032087..19032275 | 470..658 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:09:36 has no hits.
BS07161.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:10 Download gff for
BS07161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:08 Download gff for
BS07161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:41:02 Download gff for
BS07161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 43..684 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:47:36 Download gff for
BS07161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 69..710 | 17..658 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:47:36 Download gff for
BS07161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19031571..19032025 | 17..471 | 100 | -> | Plus |
3R | 19032089..19032275 | 472..658 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:41:02 Download gff for
BS07161.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14857293..14857747 | 17..471 | 100 | -> | Plus |
arm_3R | 14857811..14857997 | 472..658 | 100 | | Plus |
BS07161.complete Sequence
674 bp (674 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635747
> BS07161.complete
GAAGTTATCAGTCGACATGCCAAAGAAAATGGGAATCAACTCGAAGGCGG
TGGAGGCCCGCGAGCGCAAGGAGGCCACCAAGAAGGCCACGCAGGAGAAG
AAGAGCAAGGAGGCGGAGGATCGCCTGTGGCGCGATGACGACAAGAATCT
GGCCAAGAAACAACAGCGCAAGGACGAGGAGGAGCGCAAGCGGGCGGAGG
CGGCCAAACGGAAGGCTGAGGCCAAAGCGCTGCTTGACCAGGAAATGTCA
TCCATTAACACGCAGCGAAAGCAGCCGCTGGCCAAGATCAACCGCCAGAT
GATTCTCGAGGAGATGGAGAAGAAGCAGCGCGTAATCGAGGCGATAAACG
AGGCCAACAAGCCGATGGCCGCGCGAGTGGTGGTCCAAAACCATATCGAG
GAGAATCTGAACCGATCCATGGCCGACACGGATGTGGCATCCAACATTGA
CGAGGCCATCGTGGTGCTCAGTGTAAATGACAGCGAAGAGGACAAGCATC
CCGAGAAGCGAATGCGCGCCGCCTACAAGACCTTTGAAGCCAACAATCTG
CCCCGCATTAAGGCTGAGAATCCTTCCCTTCGCATGTCCCAGTGGAAGCA
GCTTCTGATGAAGGAATGGAACAAGTCACCAGACAACCCATTCAACCAGG
CGCGCTAAAAGCTTTCTAGACCAT
BS07161.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6013-RA | 642 | CG6013-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6013-RA | 844 | CG6013-RA | 69..710 | 17..658 | 3210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19031571..19032025 | 17..471 | 2275 | 100 | Plus |
3R | 32079331 | 3R | 19032087..19032275 | 470..658 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:44:25 has no hits.
BS07161.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:04 Download gff for
BS07161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:18 Download gff for
BS07161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 43..684 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:38 Download gff for
BS07161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 43..682 | 17..656 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:04 Download gff for
BS07161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 43..684 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:51 Download gff for
BS07161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 69..708 | 17..656 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:51 Download gff for
BS07161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19031571..19032025 | 17..471 | 100 | -> | Plus |
3R | 19032089..19032273 | 472..656 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:38 Download gff for
BS07161.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14857293..14857747 | 17..471 | 100 | -> | Plus |
arm_3R | 14857811..14857995 | 472..656 | 100 | | Plus |
BS07161.pep Sequence
Translation from 16 to 657
> BS07161.pep
MPKKMGINSKAVEARERKEATKKATQEKKSKEAEDRLWRDDDKNLAKKQQ
RKDEEERKRAEAAKRKAEAKALLDQEMSSINTQRKQPLAKINRQMILEEM
EKKQRVIEAINEANKPMAARVVVQNHIEENLNRSMADTDVASNIDEAIVV
LSVNDSEEDKHPEKRMRAAYKTFEANNLPRIKAENPSLRMSQWKQLLMKE
WNKSPDNPFNQAR*
BS07161.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6013-PA | 213 | CG6013-PA | 1..213 | 1..213 | 1072 | 100 | Plus |