Clone BS07161 Report

Search the DGRC for BS07161

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG6013-RA
Protein status:BS07161.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07161.3prime Sequence

672 bp (671 high quality bases) assembled on 2006-01-06

> BS07161.3prime
ATGGTCTAGAAAGCTTTTAGCGCGCCTGGTTGAATGGGTTGTCTGGTGAC
TTGTTCCATTCCTTCATCAGAAGCTGCTTCCACTGGGACATGCGAAGGGA
AGGATTCTCAGCCTTAATGCGGGGCAGATTGTTGGCTTCAAAGGTCTTGT
AGGCGGCGCGCATTCGCTTCTCGGGATGCTTGTCCTCTTCGCTGTCATTT
ACACTGAGCACCACGATGGCCTCGTCAATGTTGGATGCCACATCCGTGTC
GGCCATGGATCGGTTCAGATTCTCCTCGATATGGTTTTGGACCACCACTC
GCGCGGCCATCGGCTTGTTGGCCTCGTTTATCGCCTCGATTACGCGCTGC
TTCTTCTCCATCTCCTCGAGAATCATCTGGCGGTTGATCTTGGCCAGCGG
CTGCTTTCGCTGCGTGTTAATGGATGACATTTCCTGGTCAAGCAGCGCTT
TGGCCTCAGCCTTCCGTTTGGCCGCCTCCGCCCGCTTGCGCTCCTCCTCG
TCCTTGCGCTGTTGTTTCTTGGCCAGATTCTTGTCGTCATCGCGCCACAG
GCGATCCTCCGCCTCCTTGCTCTTCTTCTCCTGCGTGGCCTTCTTGGTGG
CCTCCTTGCGCTCGCGGGCCTCCACCGCCTTCGAGTTGATTCCCATTTTC
TTTGGCATGTCGACTGATAACT

BS07161.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6013-PA 642 CG6013-RA 1..642 658..17 3210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6013-RA 844 CG6013-RA 69..710 658..17 3210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19031571..19032025 658..204 2275 100 Minus
3R 32079331 3R 19032087..19032275 205..17 945 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:10:31 has no hits.

BS07161.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:09 Download gff for BS07161.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-PA 1..642 17..658 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:06 Download gff for BS07161.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-PA 1..642 17..658 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:28 Download gff for BS07161.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 43..684 17..658 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:35 Download gff for BS07161.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 69..710 17..658 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:35 Download gff for BS07161.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19031571..19032025 204..658 100 -> Minus
3R 19032089..19032275 17..203 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:28 Download gff for BS07161.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14857293..14857747 204..658 100 -> Minus
arm_3R 14857811..14857997 17..203 100   Minus

BS07161.5prime Sequence

672 bp (671 high quality bases) assembled on 2006-01-06

> BS07161.5prime
GAAGTTATCAGTCGACATGCCAAAGAAAATGGGAATCAACTCGAAGGCGG
TGGAGGCCCGCGAGCGCAAGGAGGCCACCAAGAAGGCCACGCAGGAGAAG
AAGAGCAAGGAGGCGGAGGATCGCCTGTGGCGCGATGACGACAAGAATCT
GGCCAAGAAACAACAGCGCAAGGACGAGGAGGAGCGCAAGCGGGCGGAGG
CGGCCAAACGGAAGGCTGAGGCCAAAGCGCTGCTTGACCAGGAAATGTCA
TCCATTAACACGCAGCGAAAGCAGCCGCTGGCCAAGATCAACCGCCAGAT
GATTCTCGAGGAGATGGAGAAGAAGCAGCGCGTAATCGAGGCGATAAACG
AGGCCAACAAGCCGATGGCCGCGCGAGTGGTGGTCCAAAACCATATCGAG
GAGAATCTGAACCGATCCATGGCCGACACGGATGTGGCATCCAACATTGA
CGAGGCCATCGTGGTGCTCAGTGTAAATGACAGCGAAGAGGACAAGCATC
CCGAGAAGCGAATGCGCGCCGCCTACAAGACCTTTGAAGCCAACAATCTG
CCCCGCATTAAGGCTGAGAATCCTTCCCTTCGCATGTCCCAGTGGAAGCA
GCTTCTGATGAAGGAATGGAACAAGTCACCAGACAACCCATTCAACCAGG
CGCGCTAAAAGCTTTCTAGACC

BS07161.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6013-PA 642 CG6013-RA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6013-RA 844 CG6013-RA 69..710 17..658 3210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19031571..19032025 17..471 2275 100 Plus
3R 32079331 3R 19032087..19032275 470..658 945 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:09:36 has no hits.

BS07161.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:10 Download gff for BS07161.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:08 Download gff for BS07161.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:41:02 Download gff for BS07161.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 43..684 17..658 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:47:36 Download gff for BS07161.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 69..710 17..658 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:47:36 Download gff for BS07161.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19031571..19032025 17..471 100 -> Plus
3R 19032089..19032275 472..658 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:41:02 Download gff for BS07161.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14857293..14857747 17..471 100 -> Plus
arm_3R 14857811..14857997 472..658 100   Plus

BS07161.complete Sequence

674 bp (674 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635747

> BS07161.complete
GAAGTTATCAGTCGACATGCCAAAGAAAATGGGAATCAACTCGAAGGCGG
TGGAGGCCCGCGAGCGCAAGGAGGCCACCAAGAAGGCCACGCAGGAGAAG
AAGAGCAAGGAGGCGGAGGATCGCCTGTGGCGCGATGACGACAAGAATCT
GGCCAAGAAACAACAGCGCAAGGACGAGGAGGAGCGCAAGCGGGCGGAGG
CGGCCAAACGGAAGGCTGAGGCCAAAGCGCTGCTTGACCAGGAAATGTCA
TCCATTAACACGCAGCGAAAGCAGCCGCTGGCCAAGATCAACCGCCAGAT
GATTCTCGAGGAGATGGAGAAGAAGCAGCGCGTAATCGAGGCGATAAACG
AGGCCAACAAGCCGATGGCCGCGCGAGTGGTGGTCCAAAACCATATCGAG
GAGAATCTGAACCGATCCATGGCCGACACGGATGTGGCATCCAACATTGA
CGAGGCCATCGTGGTGCTCAGTGTAAATGACAGCGAAGAGGACAAGCATC
CCGAGAAGCGAATGCGCGCCGCCTACAAGACCTTTGAAGCCAACAATCTG
CCCCGCATTAAGGCTGAGAATCCTTCCCTTCGCATGTCCCAGTGGAAGCA
GCTTCTGATGAAGGAATGGAACAAGTCACCAGACAACCCATTCAACCAGG
CGCGCTAAAAGCTTTCTAGACCAT

BS07161.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6013-RA 642 CG6013-PA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6013-RA 844 CG6013-RA 69..710 17..658 3210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19031571..19032025 17..471 2275 100 Plus
3R 32079331 3R 19032087..19032275 470..658 945 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:44:25 has no hits.

BS07161.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:14:04 Download gff for BS07161.complete
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:18 Download gff for BS07161.complete
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 43..684 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:38 Download gff for BS07161.complete
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 43..682 17..656 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:14:04 Download gff for BS07161.complete
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 43..684 17..658 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:51 Download gff for BS07161.complete
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 69..708 17..656 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:51 Download gff for BS07161.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19031571..19032025 17..471 100 -> Plus
3R 19032089..19032273 472..656 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:38 Download gff for BS07161.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14857293..14857747 17..471 100 -> Plus
arm_3R 14857811..14857995 472..656 100   Plus

BS07161.pep Sequence

Translation from 16 to 657

> BS07161.pep
MPKKMGINSKAVEARERKEATKKATQEKKSKEAEDRLWRDDDKNLAKKQQ
RKDEEERKRAEAAKRKAEAKALLDQEMSSINTQRKQPLAKINRQMILEEM
EKKQRVIEAINEANKPMAARVVVQNHIEENLNRSMADTDVASNIDEAIVV
LSVNDSEEDKHPEKRMRAAYKTFEANNLPRIKAENPSLRMSQWKQLLMKE
WNKSPDNPFNQAR*

BS07161.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6013-PA 213 CG6013-PA 1..213 1..213 1072 100 Plus