Clone Sequence Records
BS07162.3prime Sequence
891 bp (853 high quality bases) assembled on 2006-01-06
> BS07162.3prime
ATGGTCTAGAAAGCTTTTATTGCGTCTTCAGTTCCTTGCCAATGCTGTAC
GAGACGATTTTGCTCCAGTCGATCTTGGTCCTGGTGATGGGCAACTGGCG
ACGCATTGCCTTGAATGTCGTGTCCGACATCGTCTGATAGTTCTCCGAAA
TGGCCAGCTGGTACTCATTCTCGGCGTCCTCGATCAGACGGATCACCTCC
TTGGCCACCTGCTGCTCGTTGCTGACCACCACGCTTTCGCGGCACTCCTT
TGAGGACACCAGCTGGACGTTGCCGTCCTCGTAGTAATGCACCTGCACCT
TGAGCACACCCTTCAGTTCGGCGGTTCCGCTGCCCGCCTGGAAGGTCACA
TGCCACTGGGAGCGCCATCGGCCATTCCAATAGTTCTTCGGCTGGAACTG
GTGGTCTTCGATGCAAATGGTCAGGGTGATCTGGTTGCCCTGCGCCTTTC
CAAAAACAGAGCTGACCCCGTGTCTATAATGACTGGCAGTGTAGGCGAGC
GTCTCCAGGTCGAGGGCCGCCCTCCAGGGCTCCGCAGTGGCATCTGCCTC
TACGTCCTGGTAGTCGGAAGCCTCTTTTCGGAGGTGGTCGTATTTGAAGG
CTTGCTTTGTGCGCGGGTCGTAGAAGCGACCGTTTCCCAGATCGTTGTGT
TCCGATATGATGGCGTTATGATCGGTGCCCTCGATGCGAACCGGAGTCAG
CTGGTCCTTGTTGTATTGGGCGAAGGCGTGGCTAGCCCCATCCTTTAGCA
GAGTGTCATTCTTGAGGAGCTCCCGCACATCGTTGAACACTTCGTTGAAC
TCGCCGGGCGGCGCATGTAGGATGAAGTCCGATACGATGCGCACCTTCTC
CGCATCGGTGATCGGTGTCTGCTCCATGTCGACTGATAACT
BS07162.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10540-PA | 861 | CG10540-RA | 1..861 | 877..17 | 4305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cpa-RA | 1918 | CG10540-RA | 236..1096 | 877..17 | 4305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21058611..21059061 | 467..17 | 2255 | 100 | Minus |
2R | 25286936 | 2R | 21058022..21058263 | 877..636 | 1210 | 100 | Minus |
2R | 25286936 | 2R | 21058383..21058555 | 637..465 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:03:51 has no hits.
BS07162.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:11 Download gff for
BS07162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10540-PA | 1..861 | 17..877 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:09 Download gff for
BS07162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10540-PA | 1..861 | 17..877 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:40:30 Download gff for
BS07162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 226..1096 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:49:17 Download gff for
BS07162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 226..1096 | 17..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:49:17 Download gff for
BS07162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21058012..21058262 | 637..885 | 98 | -> | Minus |
2R | 21058384..21058553 | 467..636 | 100 | -> | Minus |
2R | 21058612..21059061 | 17..466 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:40:30 Download gff for
BS07162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16945517..16945767 | 637..885 | 98 | -> | Minus |
arm_2R | 16945889..16946058 | 467..636 | 100 | -> | Minus |
arm_2R | 16946117..16946566 | 17..466 | 100 | | Minus |
BS07162.5prime Sequence
891 bp (853 high quality bases) assembled on 2006-01-06
> BS07162.5prime
GAAGTTATCAGTCGACATGGAGCAGACACCGATCACCGATGCGGAGAAGG
TGCGCATCGTATCGGACTTCATCCTACATGCGCCGCCCGGCGAGTTCAAC
GAAGTGTTCAACGATGTGCGGGAGCTCCTCAAGAATGACACTCTGCTAAA
GGATGGGGCTAGCCACGCCTTCGCCCAATACAACAAGGACCAGCTGACTC
CGGTTCGCATCGAGGGCACCGATCATAACGCCATCATATCGGAACACAAC
GATCTGGGAAACGGTCGCTTCTACGACCCGCGCACAAAGCAAGCCTTCAA
ATACGACCACCTCCGAAAAGAGGCTTCCGACTACCAGGACGTAGAGGCAG
ATGCCACTGCGGAGCCCTGGAGGGCGGCCCTCGACCTGGAGACGCTCGCC
TACACTGCCAGTCATTATAGACACGGGGTCAGCTCTGTTTTTGGAAAGGC
GCAGGGCAACCAGATCACCCTGACCATTTGCATCGAAGACCACCAGTTCC
AGCCGAAGAACTATTGGAATGGCCGATGGCGCTCCCAGTGGCATGTGACC
TTCCAGGCGGGCAGCGGAACCGCCGAACTGAAGGGTGTGCTCAAGGTGCA
GGTGCATTACTACGAGGACGGCAACGTCCAGCTGGTGTCCTCAAAGGAGT
GCCGCGAAAGCGTGGTGGTCAGCAACGAGCAGCAGGTGGCCAAGGAGGTG
ATCCGTCTGATCGAGGACGCCGAGAATGAGTACCAGCTGGCCATTTCGGA
GAACTATCAGACGATGTCGGACACGACATTCAAGGCAATGCGTCGCCAGT
TGCCCATCACCAGGACCAAGATCGACTGGAGCAAAATCGTCTCGTACAGC
ATTGGCAAGGAACTGAAGACGCAATAAAAGCTTTCTAGACC
BS07162.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10540-PA | 861 | CG10540-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cpa-RA | 1918 | CG10540-RA | 236..1096 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21058611..21059061 | 427..877 | 2255 | 100 | Plus |
2R | 25286936 | 2R | 21058022..21058263 | 17..258 | 1210 | 100 | Plus |
2R | 25286936 | 2R | 21058383..21058555 | 257..429 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:39:28 has no hits.
BS07162.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:12 Download gff for
BS07162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10540-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:10 Download gff for
BS07162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10540-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:27:00 Download gff for
BS07162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 226..1096 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:00 Download gff for
BS07162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 226..1096 | 9..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:00 Download gff for
BS07162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21058384..21058553 | 258..427 | 100 | -> | Plus |
2R | 21058012..21058262 | 9..257 | 98 | -> | Plus |
2R | 21058612..21059061 | 428..877 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:27:00 Download gff for
BS07162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16945517..16945767 | 9..257 | 98 | -> | Plus |
arm_2R | 16945889..16946058 | 258..427 | 100 | -> | Plus |
arm_2R | 16946117..16946566 | 428..877 | 100 | | Plus |
BS07162.complete Sequence
893 bp (893 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635748
> BS07162.complete
GAAGTTATCAGTCGACATGGAGCAGACACCGATCACCGATGCGGAGAAGG
TGCGCATCGTATCGGACTTCATCCTACATGCGCCGCCCGGCGAGTTCAAC
GAAGTGTTCAACGATGTGCGGGAGCTCCTCAAGAATGACACTCTGCTAAA
GGATGGGGCTAGCCACGCCTTCGCCCAATACAACAAGGACCAGCTGACTC
CGGTTCGCATCGAGGGCACCGATCATAACGCCATCATATCGGAACACAAC
GATCTGGGAAACGGTCGCTTCTACGACCCGCGCACAAAGCAAGCCTTCAA
ATACGACCACCTCCGAAAAGAGGCTTCCGACTACCAGGACGTAGAGGCAG
ATGCCACTGCGGAGCCCTGGAGGGCGGCCCTCGACCTGGAGACGCTCGCC
TACACTGCCAGTCATTATAGACACGGGGTCAGCTCTGTTTTTGGAAAGGC
GCAGGGCAACCAGATCACCCTGACCATTTGCATCGAAGACCACCAGTTCC
AGCCGAAGAACTATTGGAATGGCCGATGGCGCTCCCAGTGGCATGTGACC
TTCCAGGCGGGCAGCGGAACCGCCGAACTGAAGGGTGTGCTCAAGGTGCA
GGTGCATTACTACGAGGACGGCAACGTCCAGCTGGTGTCCTCAAAGGAGT
GCCGCGAAAGCGTGGTGGTCAGCAACGAGCAGCAGGTGGCCAAGGAGGTG
ATCCGTCTGATCGAGGACGCCGAGAATGAGTACCAGCTGGCCATTTCGGA
GAACTATCAGACGATGTCGGACACGACATTCAAGGCAATGCGTCGCCAGT
TGCCCATCACCAGGACCAAGATCGACTGGAGCAAAATCGTCTCGTACAGC
ATTGGCAAGGAACTGAAGACGCAATAAAAGCTTTCTAGACCAT
BS07162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cpa-RA | 861 | CG10540-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cpa-RA | 1918 | CG10540-RA | 236..1096 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21058611..21059061 | 427..877 | 2255 | 100 | Plus |
2R | 25286936 | 2R | 21058022..21058263 | 17..258 | 1210 | 100 | Plus |
2R | 25286936 | 2R | 21058383..21058555 | 257..429 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:09:51 has no hits.
BS07162.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:37 Download gff for
BS07162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:06 Download gff for
BS07162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 222..1092 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:12 Download gff for
BS07162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 236..1094 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:37 Download gff for
BS07162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 222..1092 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:16 Download gff for
BS07162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 236..1094 | 17..875 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:16 Download gff for
BS07162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21058022..21058262 | 17..257 | 100 | -> | Plus |
2R | 21058384..21058553 | 258..427 | 100 | -> | Plus |
2R | 21058612..21059059 | 428..875 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:12 Download gff for
BS07162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16945527..16945767 | 17..257 | 100 | -> | Plus |
arm_2R | 16945889..16946058 | 258..427 | 100 | -> | Plus |
arm_2R | 16946117..16946564 | 428..875 | 100 | | Plus |
BS07162.pep Sequence
Translation from 16 to 876
> BS07162.pep
MEQTPITDAEKVRIVSDFILHAPPGEFNEVFNDVRELLKNDTLLKDGASH
AFAQYNKDQLTPVRIEGTDHNAIISEHNDLGNGRFYDPRTKQAFKYDHLR
KEASDYQDVEADATAEPWRAALDLETLAYTASHYRHGVSSVFGKAQGNQI
TLTICIEDHQFQPKNYWNGRWRSQWHVTFQAGSGTAELKGVLKVQVHYYE
DGNVQLVSSKECRESVVVSNEQQVAKEVIRLIEDAENEYQLAISENYQTM
SDTTFKAMRRQLPITRTKIDWSKIVSYSIGKELKTQ*
BS07162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cpa-PA | 286 | CG10540-PA | 1..286 | 1..286 | 1500 | 100 | Plus |