Clone BS07162 Report

Search the DGRC for BS07162

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptcpa-RA
Protein status:BS07162.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07162.3prime Sequence

891 bp (853 high quality bases) assembled on 2006-01-06

> BS07162.3prime
ATGGTCTAGAAAGCTTTTATTGCGTCTTCAGTTCCTTGCCAATGCTGTAC
GAGACGATTTTGCTCCAGTCGATCTTGGTCCTGGTGATGGGCAACTGGCG
ACGCATTGCCTTGAATGTCGTGTCCGACATCGTCTGATAGTTCTCCGAAA
TGGCCAGCTGGTACTCATTCTCGGCGTCCTCGATCAGACGGATCACCTCC
TTGGCCACCTGCTGCTCGTTGCTGACCACCACGCTTTCGCGGCACTCCTT
TGAGGACACCAGCTGGACGTTGCCGTCCTCGTAGTAATGCACCTGCACCT
TGAGCACACCCTTCAGTTCGGCGGTTCCGCTGCCCGCCTGGAAGGTCACA
TGCCACTGGGAGCGCCATCGGCCATTCCAATAGTTCTTCGGCTGGAACTG
GTGGTCTTCGATGCAAATGGTCAGGGTGATCTGGTTGCCCTGCGCCTTTC
CAAAAACAGAGCTGACCCCGTGTCTATAATGACTGGCAGTGTAGGCGAGC
GTCTCCAGGTCGAGGGCCGCCCTCCAGGGCTCCGCAGTGGCATCTGCCTC
TACGTCCTGGTAGTCGGAAGCCTCTTTTCGGAGGTGGTCGTATTTGAAGG
CTTGCTTTGTGCGCGGGTCGTAGAAGCGACCGTTTCCCAGATCGTTGTGT
TCCGATATGATGGCGTTATGATCGGTGCCCTCGATGCGAACCGGAGTCAG
CTGGTCCTTGTTGTATTGGGCGAAGGCGTGGCTAGCCCCATCCTTTAGCA
GAGTGTCATTCTTGAGGAGCTCCCGCACATCGTTGAACACTTCGTTGAAC
TCGCCGGGCGGCGCATGTAGGATGAAGTCCGATACGATGCGCACCTTCTC
CGCATCGGTGATCGGTGTCTGCTCCATGTCGACTGATAACT

BS07162.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10540-PA 861 CG10540-RA 1..861 877..17 4305 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
cpa-RA 1918 CG10540-RA 236..1096 877..17 4305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21058611..21059061 467..17 2255 100 Minus
2R 25286936 2R 21058022..21058263 877..636 1210 100 Minus
2R 25286936 2R 21058383..21058555 637..465 865 100 Minus
Blast to na_te.dros performed on 2015-02-06 12:03:51 has no hits.

BS07162.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:11 Download gff for BS07162.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10540-PA 1..861 17..877 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:09 Download gff for BS07162.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10540-PA 1..861 17..877 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:40:30 Download gff for BS07162.3prime
Subject Subject Range Query Range Percent Splice Strand
cpa-RA 226..1096 17..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:49:17 Download gff for BS07162.3prime
Subject Subject Range Query Range Percent Splice Strand
cpa-RA 226..1096 17..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:49:17 Download gff for BS07162.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21058012..21058262 637..885 98 -> Minus
2R 21058384..21058553 467..636 100 -> Minus
2R 21058612..21059061 17..466 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:40:30 Download gff for BS07162.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16945517..16945767 637..885 98 -> Minus
arm_2R 16945889..16946058 467..636 100 -> Minus
arm_2R 16946117..16946566 17..466 100   Minus

BS07162.5prime Sequence

891 bp (853 high quality bases) assembled on 2006-01-06

> BS07162.5prime
GAAGTTATCAGTCGACATGGAGCAGACACCGATCACCGATGCGGAGAAGG
TGCGCATCGTATCGGACTTCATCCTACATGCGCCGCCCGGCGAGTTCAAC
GAAGTGTTCAACGATGTGCGGGAGCTCCTCAAGAATGACACTCTGCTAAA
GGATGGGGCTAGCCACGCCTTCGCCCAATACAACAAGGACCAGCTGACTC
CGGTTCGCATCGAGGGCACCGATCATAACGCCATCATATCGGAACACAAC
GATCTGGGAAACGGTCGCTTCTACGACCCGCGCACAAAGCAAGCCTTCAA
ATACGACCACCTCCGAAAAGAGGCTTCCGACTACCAGGACGTAGAGGCAG
ATGCCACTGCGGAGCCCTGGAGGGCGGCCCTCGACCTGGAGACGCTCGCC
TACACTGCCAGTCATTATAGACACGGGGTCAGCTCTGTTTTTGGAAAGGC
GCAGGGCAACCAGATCACCCTGACCATTTGCATCGAAGACCACCAGTTCC
AGCCGAAGAACTATTGGAATGGCCGATGGCGCTCCCAGTGGCATGTGACC
TTCCAGGCGGGCAGCGGAACCGCCGAACTGAAGGGTGTGCTCAAGGTGCA
GGTGCATTACTACGAGGACGGCAACGTCCAGCTGGTGTCCTCAAAGGAGT
GCCGCGAAAGCGTGGTGGTCAGCAACGAGCAGCAGGTGGCCAAGGAGGTG
ATCCGTCTGATCGAGGACGCCGAGAATGAGTACCAGCTGGCCATTTCGGA
GAACTATCAGACGATGTCGGACACGACATTCAAGGCAATGCGTCGCCAGT
TGCCCATCACCAGGACCAAGATCGACTGGAGCAAAATCGTCTCGTACAGC
ATTGGCAAGGAACTGAAGACGCAATAAAAGCTTTCTAGACC

BS07162.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10540-PA 861 CG10540-RA 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
cpa-RA 1918 CG10540-RA 236..1096 17..877 4305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21058611..21059061 427..877 2255 100 Plus
2R 25286936 2R 21058022..21058263 17..258 1210 100 Plus
2R 25286936 2R 21058383..21058555 257..429 865 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:39:28 has no hits.

BS07162.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:12 Download gff for BS07162.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10540-PA 1..861 17..877 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:10 Download gff for BS07162.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10540-PA 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:27:00 Download gff for BS07162.5prime
Subject Subject Range Query Range Percent Splice Strand
cpa-RA 226..1096 9..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:00 Download gff for BS07162.5prime
Subject Subject Range Query Range Percent Splice Strand
cpa-RA 226..1096 9..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:00 Download gff for BS07162.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21058384..21058553 258..427 100 -> Plus
2R 21058012..21058262 9..257 98 -> Plus
2R 21058612..21059061 428..877 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:27:00 Download gff for BS07162.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16945517..16945767 9..257 98 -> Plus
arm_2R 16945889..16946058 258..427 100 -> Plus
arm_2R 16946117..16946566 428..877 100   Plus

BS07162.complete Sequence

893 bp (893 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635748

> BS07162.complete
GAAGTTATCAGTCGACATGGAGCAGACACCGATCACCGATGCGGAGAAGG
TGCGCATCGTATCGGACTTCATCCTACATGCGCCGCCCGGCGAGTTCAAC
GAAGTGTTCAACGATGTGCGGGAGCTCCTCAAGAATGACACTCTGCTAAA
GGATGGGGCTAGCCACGCCTTCGCCCAATACAACAAGGACCAGCTGACTC
CGGTTCGCATCGAGGGCACCGATCATAACGCCATCATATCGGAACACAAC
GATCTGGGAAACGGTCGCTTCTACGACCCGCGCACAAAGCAAGCCTTCAA
ATACGACCACCTCCGAAAAGAGGCTTCCGACTACCAGGACGTAGAGGCAG
ATGCCACTGCGGAGCCCTGGAGGGCGGCCCTCGACCTGGAGACGCTCGCC
TACACTGCCAGTCATTATAGACACGGGGTCAGCTCTGTTTTTGGAAAGGC
GCAGGGCAACCAGATCACCCTGACCATTTGCATCGAAGACCACCAGTTCC
AGCCGAAGAACTATTGGAATGGCCGATGGCGCTCCCAGTGGCATGTGACC
TTCCAGGCGGGCAGCGGAACCGCCGAACTGAAGGGTGTGCTCAAGGTGCA
GGTGCATTACTACGAGGACGGCAACGTCCAGCTGGTGTCCTCAAAGGAGT
GCCGCGAAAGCGTGGTGGTCAGCAACGAGCAGCAGGTGGCCAAGGAGGTG
ATCCGTCTGATCGAGGACGCCGAGAATGAGTACCAGCTGGCCATTTCGGA
GAACTATCAGACGATGTCGGACACGACATTCAAGGCAATGCGTCGCCAGT
TGCCCATCACCAGGACCAAGATCGACTGGAGCAAAATCGTCTCGTACAGC
ATTGGCAAGGAACTGAAGACGCAATAAAAGCTTTCTAGACCAT

BS07162.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
cpa-RA 861 CG10540-PA 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
cpa-RA 1918 CG10540-RA 236..1096 17..877 4305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21058611..21059061 427..877 2255 100 Plus
2R 25286936 2R 21058022..21058263 17..258 1210 100 Plus
2R 25286936 2R 21058383..21058555 257..429 865 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:09:51 has no hits.

BS07162.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:37 Download gff for BS07162.complete
Subject Subject Range Query Range Percent Splice Strand
cpa-RA 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:06 Download gff for BS07162.complete
Subject Subject Range Query Range Percent Splice Strand
cpa-RA 222..1092 9..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:12 Download gff for BS07162.complete
Subject Subject Range Query Range Percent Splice Strand
cpa-RA 236..1094 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:37 Download gff for BS07162.complete
Subject Subject Range Query Range Percent Splice Strand
cpa-RA 222..1092 9..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:16 Download gff for BS07162.complete
Subject Subject Range Query Range Percent Splice Strand
cpa-RA 236..1094 17..875 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:16 Download gff for BS07162.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21058022..21058262 17..257 100 -> Plus
2R 21058384..21058553 258..427 100 -> Plus
2R 21058612..21059059 428..875 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:12 Download gff for BS07162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16945527..16945767 17..257 100 -> Plus
arm_2R 16945889..16946058 258..427 100 -> Plus
arm_2R 16946117..16946564 428..875 100   Plus

BS07162.pep Sequence

Translation from 16 to 876

> BS07162.pep
MEQTPITDAEKVRIVSDFILHAPPGEFNEVFNDVRELLKNDTLLKDGASH
AFAQYNKDQLTPVRIEGTDHNAIISEHNDLGNGRFYDPRTKQAFKYDHLR
KEASDYQDVEADATAEPWRAALDLETLAYTASHYRHGVSSVFGKAQGNQI
TLTICIEDHQFQPKNYWNGRWRSQWHVTFQAGSGTAELKGVLKVQVHYYE
DGNVQLVSSKECRESVVVSNEQQVAKEVIRLIEDAENEYQLAISENYQTM
SDTTFKAMRRQLPITRTKIDWSKIVSYSIGKELKTQ*

BS07162.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
cpa-PA 286 CG10540-PA 1..286 1..286 1500 100 Plus