Clone Sequence Records
BS07163.3prime Sequence
942 bp (841 high quality bases) assembled on 2006-01-06
> BS07163.3prime
ATGGTCTAGAAAGCTTTTAAAAGTAGATGCGAACAGCCTCCTCGGCATTC
TGCTCCACGGGGCAGTAGGGGCACTTCAGTATGTGGCCAACACTCAGCTT
GTGCAGGGCGTCGTTGGATATGACATGACCGCAGGTCAACTTCTTCGGCG
GATTGTCCTCGGAAGTCTGCTGGCGCAATATGGGGCAGGCAAAGATCGAG
TGGAATCGGAATTCCGGCTGCAGATCGATCTCAATGGGCAACTCGTCGCA
GCCGTTCCACATGCCAAGGACTTGGCGCGACTGCATCACCTGCTTGATAT
TGAGCAAGGCGGGCAGGGCAGTGCATCCGGCATTGACCACAACAGACAGG
GCGGAGTTCTTGCTAATGCCTAGCAGTTGGCATGCGTCTTTGAGGAATAT
GAACGACAGTTCGGTCCACTTCTCCTGGCCCAAGAAGTGCTTGTAAGGCG
AGTTCTCCAGTCCACTGGGCAGATATATAAAGCTGGCCATCAAGTTGGCT
ATTTCGTGCTCATAGCGCACAGCAAACTTCTTGAAGTTCAGTCGAGCGTA
GGAGATGGCCTCGCGCTGCGAGTCCAATCCGTAGGAGACCAGCTGCATGA
AACGCATGCGGTGCAGCCGGAACTCTATGAGCGAGTGGCGGTCACTCAGC
TGCTGGGAGTACATCTTTGCCCACTTGAGGGCGTCAGTCAGATCCCGCTT
TTGGATCTTCACCCAAATGCCGTAGATGTCGGCAAACTCGCGCTCCGAGT
CGAACACATCCTGNGCATGCTCCGGCGACATCTTGCACTCGCGGATTAGC
GTGCGAGCCACATCGTCCATGCCCTGNCGACAATAATGCTTGGCAATGGC
CTTGTTCAGCAACATCAAGTTCTCCTCGTCCTGCAGCACGTCCACTCGCA
TGGTGGACGAGAAGTCGGCGCTAAAGTTGCGGTCAATGGCCT
BS07163.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3295-PA | 1299 | CG3295-RA | 374..1299 | 942..17 | 4567 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3295-RA | 1853 | CG3295-RA | 620..1545 | 942..17 | 4593 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21015902..21016827 | 17..942 | 4593 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:58:28 has no hits.
BS07163.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:13 Download gff for
BS07163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3295-PA | 374..1299 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:12 Download gff for
BS07163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3295-PA | 374..1299 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:58:14 Download gff for
BS07163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3295-RA | 620..1547 | 13..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:30 Download gff for
BS07163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3295-RA | 620..1547 | 13..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:30 Download gff for
BS07163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21015900..21016827 | 13..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:58:14 Download gff for
BS07163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16903405..16904332 | 13..942 | 99 | | Plus |
BS07163.5prime Sequence
895 bp (847 high quality bases) assembled on 2006-01-06
> BS07163.5prime
GAAGTTATCAGTCGACATGGACAGCGAGTCGTTGGCCTGTTCGTCGGTGG
AGAAGGACCTGACCCGAGTGGTCAGCAAACTGGAGCAGCTTCACGAGAAC
GCAGAGGCGGACATCGGAGATATAGCCACACAGATGTCGGAGCTGGTAGA
GGTTCTCAGCAGGGCGGAGCAGCTGGTGACCACTCTGAACTCGAGCACCC
AGGTGTCCCAGGACGATCCCATGGGCGATGCGGTGAGCATGCAGGTGGAG
ACGGAACCGACGGCACCACAACGCCTAACCGAGCGCCAAGTGGAGAGCGT
CCGGAATGCTCTCGCCAGGTGCCACGAGCGCGTGCAAAAACTGTCCACGG
AGCACCGCGATCTGCACGGCTCCATTTCGAAGATCGGCAAGGCCATTGAC
CGCAACTTTAGCGCCGACTTCTCGTCCACCATGCGAGTGGACGTGCTGCA
GGACGAGGAGAACCTGATGTTGCTGAACAAGGCCATTGCCAAGCATTATT
GTCGCCAGGGCATGGACGATGTGGCTCGCACGCTAATCCGCGAGTGCAAG
ATGTCGCCGGAGCATGCCCAGGATGTGTTCGACTCGGAGCGCGAGTTTGC
CGACATCTACGGCATTTGGGTGAAGATCCAAAAGCGGGATCTGACTGACG
CCCTCAAGTGGGCAAAGATGTACTCCCAGCAGCTGAGTGACCGCCACTCG
CTCATAGAGTTCCGGCTGCACCGCATGCGTTTCATGCAGCTGGTCTCCTA
CGGATTGGACTCGCAGCGCGAGGCCATCTCCTACGCTCGACTGAACTTCA
AGAAGTTTGCTGTGCGCTATGAGCACGAAATAGCCAACTTGATGGCCAGC
TTTATATATCTGCCCAGTGGACTGGAGAACTCGCCTTACAAGCAC
BS07163.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3295-PA | 1299 | CG3295-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3295-RA | 1853 | CG3295-RA | 247..1125 | 17..895 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21016322..21017200 | 895..17 | 4395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:54:09 has no hits.
BS07163.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:14 Download gff for
BS07163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3295-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:13 Download gff for
BS07163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3295-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:26:54 Download gff for
BS07163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3295-RA | 247..1125 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:12 Download gff for
BS07163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3295-RA | 247..1125 | 17..895 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:12 Download gff for
BS07163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21016322..21017200 | 17..895 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:26:54 Download gff for
BS07163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16903827..16904705 | 17..895 | 100 | | Minus |
BS07163.complete Sequence
1331 bp (1331 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635749
> BS07163.complete
GAAGTTATCAGTCGACATGGACAGCGAGTCGTTGGCCTGTTCGTCGGTGG
AGAAGGACCTGACCCGAGTGGTCAGCAAACTGGAGCAGCTTCACGAGAAC
GCAGAGGCGGACATCGGAGATATAGCCACACAGATGTCGGAGCTGGTAGA
GGTTCTCAGCAGGGCGGAGCAGCTGGTGACCACTCTGAACTCGAGCACCC
AGGTGTCCCAGGACGATCCCATGGGCGATGCGGTGAGCATGCAGGTGGAG
ACGGAACCGACGGCACCACAACGCCTAACCGAGCGCCAAGTGGAGAGCGT
CCGGAATGCTCTCGCCAGGTGCCACGAGCGCGTGCAAAAACTGTCCACGG
AGCACCGCGATCTGCACGGCTCCATTTCGAAGATCGGCAAGGCCATTGAC
CGCAACTTTAGCGCCGACTTCTCGTCCACCATGCGAGTGGACGTGCTGCA
GGACGAGGAGAACCTGATGTTGCTGAACAAGGCCATTGCCAAGCATTATT
GTCGCCAGGGCATGGACGATGTGGCTCGCACGCTAATCCGCGAGTGCAAG
ATGTCGCCGGAGCATGCCCAGGATGTGTTCGACTCGGAGCGCGAGTTTGC
CGACATCTACGGCATTTGGGTGAAGATCCAAAAGCGGGATCTGACTGACG
CCCTCAAGTGGGCAAAGATGTACTCCCAGCAGCTGAGTGACCGCCACTCG
CTCATAGAGTTCCGGCTGCACCGCATGCGTTTCATGCAGCTGGTCTCCTA
CGGATTGGACTCGCAGCGCGAGGCCATCTCCTACGCTCGACTGAACTTCA
AGAAGTTTGCTGTGCGCTATGAGCACGAAATAGCCAACTTGATGGCCAGC
TTTATATATCTGCCCAGTGGACTGGAGAACTCGCCTTACAAGCACTTCTT
GGGCCAGGAGAAGTGGACCGAACTGTCGTTCATATTCCTCAAAGACGCAT
GCCAACTGCTAGGCATTAGCAAGAACTCCGCCCTGTCTGTTGTGGTCAAT
GCCGGATGCACTGCCCTGCCCGCCTTGCTCAATATCAAGCAGGTGATGCA
GTCGCGCCAAGTCCTTGGCATGTGGAACGGCTGCGACGAGTTGCCCATTG
AGATCGATCTGCAGCCGGAATTCCGATTCCACTCGATCTTTGCCTGCCCC
ATATTGCGCCAGCAGACTTCCGAGGACAATCCGCCGAAGAAGTTGACCTG
CGGTCATGTCATATCCAACGACGCCCTGCACAAGCTGAGTGTTGGCCACA
TACTGAAGTGCCCCTACTGCCCCGTGGAGCAGAATGCCGAGGAGGCTGTT
CGCATCTACTTTTAAAAGCTTTCTAGACCAT
BS07163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3295-RA | 1299 | CG3295-PA | 1..1299 | 17..1315 | 6495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3295-RA | 1853 | CG3295-RA | 247..1545 | 17..1315 | 6495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21015902..21017200 | 1315..17 | 6495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:45:14 has no hits.
BS07163.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:40 Download gff for
BS07163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3295-RA | 1..1299 | 17..1315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:09 Download gff for
BS07163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3295-RA | 247..1547 | 17..1319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:00 Download gff for
BS07163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3295-RA | 247..1543 | 17..1313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:40 Download gff for
BS07163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3295-RA | 247..1547 | 17..1319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:56 Download gff for
BS07163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3295-RA | 247..1543 | 17..1313 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:56 Download gff for
BS07163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21015904..21017200 | 17..1313 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:00 Download gff for
BS07163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16903409..16904705 | 17..1313 | 100 | | Minus |
BS07163.pep Sequence
Translation from 16 to 1314
> BS07163.pep
MDSESLACSSVEKDLTRVVSKLEQLHENAEADIGDIATQMSELVEVLSRA
EQLVTTLNSSTQVSQDDPMGDAVSMQVETEPTAPQRLTERQVESVRNALA
RCHERVQKLSTEHRDLHGSISKIGKAIDRNFSADFSSTMRVDVLQDEENL
MLLNKAIAKHYCRQGMDDVARTLIRECKMSPEHAQDVFDSEREFADIYGI
WVKIQKRDLTDALKWAKMYSQQLSDRHSLIEFRLHRMRFMQLVSYGLDSQ
REAISYARLNFKKFAVRYEHEIANLMASFIYLPSGLENSPYKHFLGQEKW
TELSFIFLKDACQLLGISKNSALSVVVNAGCTALPALLNIKQVMQSRQVL
GMWNGCDELPIEIDLQPEFRFHSIFACPILRQQTSEDNPPKKLTCGHVIS
NDALHKLSVGHILKCPYCPVEQNAEEAVRIYF*
BS07163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3295-PA | 432 | CG3295-PA | 1..432 | 1..432 | 2224 | 100 | Plus |
| CG31357-PA | 394 | CG31357-PA | 40..296 | 73..334 | 158 | 23.3 | Plus |
