Clone Sequence Records
BS07168.3prime Sequence
822 bp (821 high quality bases) assembled on 2006-01-06
> BS07168.3prime
ATGGTCTAGAAAGCTTCTACTGCTCGTAGTAAACCGCGTCAATCAAAAAG
AGCGCTGCGAATATGAGCGCCTTCATGCGGACATCCAGATTCAGGGGGAA
GGTGACGCTGAAGTAGTCCGCATCGGTGAACAGCTCCCTTCCCAGTCCGG
ACCATTGTTTGCTGATTTTGCCGATCTCCTCGTTGTTGGCGCTCAATACC
TTGAAGTTGGTATCGCTGAAGCACTTGCAGGGACAGACGGGTCCCTCGAT
CTGCAGGACGGTATCGCCGCATGTGTTCTTGATGTTGAACTTGGGCCGCA
TGAAGGTGCAGACCTGCTCAACGCTACCGATCACCTGGCCGGGTGGCGCC
GACACCTCCACGGCGTTCATGCAGCTGGGAAAGCAGCAGAGGATGTCGCA
CTTGAAGGGCCGGTACAGGTGGAGCACCTCGTTCTGAAAATTGTCCAGTA
TCTTCATCTCGAAGGGGCGCGACCGGCCGAGCATGTTGCGGGTGCAGCAG
TCGCTCTCCTCGTACGCGAAGTACACATTCTGGCCCAGTGAGTTCTTCAC
CTTGAAGCGGTTCTTCGTCTCGAAGCCGGTGAGCAGCTCCAGTTTCTCGA
TCTTCTGCGACACGAGCAACTGGTCCAGAGCGGTCAGGTATTCCAGTCCC
TGCGGGCAGTTGGGCATGCCCACGGGTATCGACATCCAGTTTTCAGGTCC
GTTGGCATTGTTGCCAACATTCGCCGCCTGCGGCTGCAGGACCACTGCGC
CATTCTCGTCCTGCGGTGCATTCTGCGGGAGCACCTTGTACTCGCTCATC
TGCATCATGTCGACTGATAACT
BS07168.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1893-PA | 792 | CG1893-RA | 1..792 | 808..17 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb2-RA | 1586 | CG1893-RA | 62..853 | 808..17 | 3960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3045721..3046217 | 198..694 | 2485 | 100 | Plus |
3L | 28110227 | 3L | 3044972..3045133 | 40..201 | 810 | 100 | Plus |
3L | 28110227 | 3L | 3046637..3046751 | 694..808 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 15:16:41 has no hits.
BS07168.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:24 Download gff for
BS07168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1893-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:26 Download gff for
BS07168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1893-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:04:16 Download gff for
BS07168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 62..862 | 5..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:43:15 Download gff for
BS07168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 62..862 | 5..808 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:43:15 Download gff for
BS07168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3044973..3045131 | 41..199 | 100 | <- | Plus |
3L | 3045723..3046216 | 200..693 | 100 | <- | Plus |
3L | 3046637..3046751 | 694..808 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:04:16 Download gff for
BS07168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3046637..3046751 | 694..808 | 100 | | Plus |
arm_3L | 3044973..3045131 | 41..199 | 100 | <- | Plus |
arm_3L | 3045723..3046216 | 200..693 | 100 | <- | Plus |
BS07168.5prime Sequence
822 bp (750 high quality bases) assembled on 2006-01-06
> BS07168.5prime
GAAGTTATCAGTCGACATGATGCAGATGAGCGAGTACAAGGTGCTCCCGC
AGAATGCACCGCAGGACGAGAATGGCGCAGTGGTCCTGCAGCCGCAGGCG
GCGAATGTTGGCAACAATGCCAACGGACCTGAAAACTGGATGTCGATACC
CGTGGGCATGCCCAACTGCCCGCAGGGACTGGAATACCTGACCGCTCTGG
ACCAGTTGCTCGTGTCGCAGAAGATCGAGAAACTGGAGCTGCTCACCGGC
TTCGAGACGAAGAACCGCTTCAAGGTGAAGAACTCACTGGGCCAGAATGT
GTACTTCGCGTACGAGGAGAGCGACTGCTGCACCCGCAACATGCTCGGCC
GGTCGCGCCCCTTCGAGATGAAGATACTGGACAATTTTCAGAACGAGGTG
CTCCACCTGTACCGGCCCTTCAAGTGCGACATCCTCTGCTGCTTTCCCAG
CTGCATGAACGCCGTGGAGGTGTCGGCGCCACCCGGCCAGGTGATCGGTA
GCGTTGAGCAGGTCTGCACCTTCATGCGGCCCAAGTTCAACATCAAGAAC
ACATGCGGCGATACCGTCCTGCAGATCGAGGGACCCGTCTGTCCCTGCAA
GTGCTTCAGCGATACCAACTTCAAGGTATTGAGCGCCAACAACGAGGAGA
TCGGCAAAATCAGCAAACAATGGTCCGGACTGGGAAGGGAGCTGTTCACC
GATGCGGACTACTTCAGCGTCACCTTCCCCCTGAATCTGGATGTCCGCAT
GAAGGCGCTCATATTCGCAGCGCTCTTTTTGATTGACGCGGTTTACTACG
AGCAGTAGAAGCTTTCTAGACC
BS07168.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1893-PA | 792 | CG1893-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb2-RA | 1586 | CG1893-RA | 62..853 | 17..808 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3045721..3046217 | 627..131 | 2485 | 100 | Minus |
3L | 28110227 | 3L | 3044972..3045133 | 785..624 | 810 | 100 | Minus |
3L | 28110227 | 3L | 3046637..3046751 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:09:21 has no hits.
BS07168.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:25 Download gff for
BS07168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1893-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:28 Download gff for
BS07168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1893-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:29 Download gff for
BS07168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 62..862 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:41:20 Download gff for
BS07168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 62..862 | 17..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:41:20 Download gff for
BS07168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3044973..3045131 | 626..784 | 100 | <- | Minus |
3L | 3045723..3046216 | 132..625 | 100 | <- | Minus |
3L | 3046637..3046751 | 17..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:29 Download gff for
BS07168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3044973..3045131 | 626..784 | 100 | <- | Minus |
arm_3L | 3045723..3046216 | 132..625 | 100 | <- | Minus |
arm_3L | 3046637..3046751 | 17..131 | 100 | | Minus |
BS07168.complete Sequence
824 bp (824 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635750
> BS07168.complete
GAAGTTATCAGTCGACATGATGCAGATGAGCGAGTACAAGGTGCTCCCGC
AGAATGCACCGCAGGACGAGAATGGCGCAGTGGTCCTGCAGCCGCAGGCG
GCGAATGTTGGCAACAATGCCAACGGACCTGAAAACTGGATGTCGATACC
CGTGGGCATGCCCAACTGCCCGCAGGGACTGGAATACCTGACCGCTCTGG
ACCAGTTGCTCGTGTCGCAGAAGATCGAGAAACTGGAGCTGCTCACCGGC
TTCGAGACGAAGAACCGCTTCAAGGTGAAGAACTCACTGGGCCAGAATGT
GTACTTCGCGTACGAGGAGAGCGACTGCTGCACCCGCAACATGCTCGGCC
GGTCGCGCCCCTTCGAGATGAAGATACTGGACAATTTTCAGAACGAGGTG
CTCCACCTGTACCGGCCCTTCAAGTGCGACATCCTCTGCTGCTTTCCCAG
CTGCATGAACGCCGTGGAGGTGTCGGCGCCACCCGGCCAGGTGATCGGTA
GCGTTGAGCAGGTCTGCACCTTCATGCGGCCCAAGTTCAACATCAAGAAC
ACATGCGGCGATACCGTCCTGCAGATCGAGGGACCCGTCTGTCCCTGCAA
GTGCTTCAGCGATACCAACTTCAAGGTATTGAGCGCCAACAACGAGGAGA
TCGGCAAAATCAGCAAACAATGGTCCGGACTGGGAAGGGAGCTGTTCACC
GATGCGGACTACTTCAGCGTCACCTTCCCCCTGAATCTGGATGTCCGCAT
GAAGGCGCTCATATTCGCAGCGCTCTTTTTGATTGACGCGGTTTACTACG
AGCAGTAGAAGCTTTCTAGACCAT
BS07168.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb2-RA | 792 | CG1893-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb2-RA | 1586 | CG1893-RA | 62..853 | 17..808 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3045721..3046217 | 627..131 | 2485 | 100 | Minus |
3L | 28110227 | 3L | 3044972..3045133 | 785..624 | 810 | 100 | Minus |
3L | 28110227 | 3L | 3046637..3046751 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:11:50 has no hits.
BS07168.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:11 Download gff for
BS07168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 60..860 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:44 Download gff for
BS07168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 62..853 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:42 Download gff for
BS07168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 60..860 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:28 Download gff for
BS07168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 62..853 | 17..808 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:28 Download gff for
BS07168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3044846..3044869 | 785..808 | 100 | <- | Minus |
3L | 3044973..3045131 | 626..784 | 100 | <- | Minus |
3L | 3045723..3046216 | 132..625 | 100 | <- | Minus |
3L | 3046637..3046751 | 17..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:44 Download gff for
BS07168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3046637..3046751 | 17..131 | 100 | | Minus |
arm_3L | 3044846..3044869 | 785..808 | 100 | <- | Minus |
arm_3L | 3044973..3045131 | 626..784 | 100 | <- | Minus |
arm_3L | 3045723..3046216 | 132..625 | 100 | <- | Minus |
BS07168.pep Sequence
Translation from 16 to 807
> BS07168.pep
MMQMSEYKVLPQNAPQDENGAVVLQPQAANVGNNANGPENWMSIPVGMPN
CPQGLEYLTALDQLLVSQKIEKLELLTGFETKNRFKVKNSLGQNVYFAYE
ESDCCTRNMLGRSRPFEMKILDNFQNEVLHLYRPFKCDILCCFPSCMNAV
EVSAPPGQVIGSVEQVCTFMRPKFNIKNTCGDTVLQIEGPVCPCKCFSDT
NFKVLSANNEEIGKISKQWSGLGRELFTDADYFSVTFPLNLDVRMKALIF
AALFLIDAVYYEQ*
BS07168.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb2-PA | 263 | CG1893-PA | 1..263 | 1..263 | 1404 | 100 | Plus |
scramb1-PA | 416 | CG32056-PA | 182..404 | 40..263 | 761 | 59.8 | Plus |
scramb1-PB | 233 | CG32056-PB | 1..221 | 42..263 | 749 | 59.9 | Plus |
scramb1-PC | 332 | CG32056-PC | 101..320 | 43..263 | 744 | 59.7 | Plus |
CG9084-PB | 275 | CG9084-PB | 67..272 | 54..262 | 231 | 30.8 | Plus |