Clone BS07168 Report

Search the DGRC for BS07168

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:68
Vector:pDNR-Dual
Associated Gene/Transcriptscramb2-RA
Protein status:BS07168.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07168.3prime Sequence

822 bp (821 high quality bases) assembled on 2006-01-06

> BS07168.3prime
ATGGTCTAGAAAGCTTCTACTGCTCGTAGTAAACCGCGTCAATCAAAAAG
AGCGCTGCGAATATGAGCGCCTTCATGCGGACATCCAGATTCAGGGGGAA
GGTGACGCTGAAGTAGTCCGCATCGGTGAACAGCTCCCTTCCCAGTCCGG
ACCATTGTTTGCTGATTTTGCCGATCTCCTCGTTGTTGGCGCTCAATACC
TTGAAGTTGGTATCGCTGAAGCACTTGCAGGGACAGACGGGTCCCTCGAT
CTGCAGGACGGTATCGCCGCATGTGTTCTTGATGTTGAACTTGGGCCGCA
TGAAGGTGCAGACCTGCTCAACGCTACCGATCACCTGGCCGGGTGGCGCC
GACACCTCCACGGCGTTCATGCAGCTGGGAAAGCAGCAGAGGATGTCGCA
CTTGAAGGGCCGGTACAGGTGGAGCACCTCGTTCTGAAAATTGTCCAGTA
TCTTCATCTCGAAGGGGCGCGACCGGCCGAGCATGTTGCGGGTGCAGCAG
TCGCTCTCCTCGTACGCGAAGTACACATTCTGGCCCAGTGAGTTCTTCAC
CTTGAAGCGGTTCTTCGTCTCGAAGCCGGTGAGCAGCTCCAGTTTCTCGA
TCTTCTGCGACACGAGCAACTGGTCCAGAGCGGTCAGGTATTCCAGTCCC
TGCGGGCAGTTGGGCATGCCCACGGGTATCGACATCCAGTTTTCAGGTCC
GTTGGCATTGTTGCCAACATTCGCCGCCTGCGGCTGCAGGACCACTGCGC
CATTCTCGTCCTGCGGTGCATTCTGCGGGAGCACCTTGTACTCGCTCATC
TGCATCATGTCGACTGATAACT

BS07168.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1893-PA 792 CG1893-RA 1..792 808..17 3960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
scramb2-RA 1586 CG1893-RA 62..853 808..17 3960 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3045721..3046217 198..694 2485 100 Plus
3L 28110227 3L 3044972..3045133 40..201 810 100 Plus
3L 28110227 3L 3046637..3046751 694..808 575 100 Plus
Blast to na_te.dros performed on 2015-02-08 15:16:41 has no hits.

BS07168.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:24 Download gff for BS07168.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1893-PA 1..792 17..808 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:26 Download gff for BS07168.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1893-PA 1..792 17..808 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:04:16 Download gff for BS07168.3prime
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 62..862 5..808 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:43:15 Download gff for BS07168.3prime
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 62..862 5..808 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:43:15 Download gff for BS07168.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3044973..3045131 41..199 100 <- Plus
3L 3045723..3046216 200..693 100 <- Plus
3L 3046637..3046751 694..808 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:04:16 Download gff for BS07168.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3046637..3046751 694..808 100   Plus
arm_3L 3044973..3045131 41..199 100 <- Plus
arm_3L 3045723..3046216 200..693 100 <- Plus

BS07168.5prime Sequence

822 bp (750 high quality bases) assembled on 2006-01-06

> BS07168.5prime
GAAGTTATCAGTCGACATGATGCAGATGAGCGAGTACAAGGTGCTCCCGC
AGAATGCACCGCAGGACGAGAATGGCGCAGTGGTCCTGCAGCCGCAGGCG
GCGAATGTTGGCAACAATGCCAACGGACCTGAAAACTGGATGTCGATACC
CGTGGGCATGCCCAACTGCCCGCAGGGACTGGAATACCTGACCGCTCTGG
ACCAGTTGCTCGTGTCGCAGAAGATCGAGAAACTGGAGCTGCTCACCGGC
TTCGAGACGAAGAACCGCTTCAAGGTGAAGAACTCACTGGGCCAGAATGT
GTACTTCGCGTACGAGGAGAGCGACTGCTGCACCCGCAACATGCTCGGCC
GGTCGCGCCCCTTCGAGATGAAGATACTGGACAATTTTCAGAACGAGGTG
CTCCACCTGTACCGGCCCTTCAAGTGCGACATCCTCTGCTGCTTTCCCAG
CTGCATGAACGCCGTGGAGGTGTCGGCGCCACCCGGCCAGGTGATCGGTA
GCGTTGAGCAGGTCTGCACCTTCATGCGGCCCAAGTTCAACATCAAGAAC
ACATGCGGCGATACCGTCCTGCAGATCGAGGGACCCGTCTGTCCCTGCAA
GTGCTTCAGCGATACCAACTTCAAGGTATTGAGCGCCAACAACGAGGAGA
TCGGCAAAATCAGCAAACAATGGTCCGGACTGGGAAGGGAGCTGTTCACC
GATGCGGACTACTTCAGCGTCACCTTCCCCCTGAATCTGGATGTCCGCAT
GAAGGCGCTCATATTCGCAGCGCTCTTTTTGATTGACGCGGTTTACTACG
AGCAGTAGAAGCTTTCTAGACC

BS07168.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1893-PA 792 CG1893-RA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
scramb2-RA 1586 CG1893-RA 62..853 17..808 3960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3045721..3046217 627..131 2485 100 Minus
3L 28110227 3L 3044972..3045133 785..624 810 100 Minus
3L 28110227 3L 3046637..3046751 131..17 575 100 Minus
Blast to na_te.dros performed on 2015-02-09 22:09:21 has no hits.

BS07168.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:25 Download gff for BS07168.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1893-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:28 Download gff for BS07168.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1893-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:29 Download gff for BS07168.5prime
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 62..862 17..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:41:20 Download gff for BS07168.5prime
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 62..862 17..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:41:20 Download gff for BS07168.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3044973..3045131 626..784 100 <- Minus
3L 3045723..3046216 132..625 100 <- Minus
3L 3046637..3046751 17..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:29 Download gff for BS07168.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3044973..3045131 626..784 100 <- Minus
arm_3L 3045723..3046216 132..625 100 <- Minus
arm_3L 3046637..3046751 17..131 100   Minus

BS07168.complete Sequence

824 bp (824 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635750

> BS07168.complete
GAAGTTATCAGTCGACATGATGCAGATGAGCGAGTACAAGGTGCTCCCGC
AGAATGCACCGCAGGACGAGAATGGCGCAGTGGTCCTGCAGCCGCAGGCG
GCGAATGTTGGCAACAATGCCAACGGACCTGAAAACTGGATGTCGATACC
CGTGGGCATGCCCAACTGCCCGCAGGGACTGGAATACCTGACCGCTCTGG
ACCAGTTGCTCGTGTCGCAGAAGATCGAGAAACTGGAGCTGCTCACCGGC
TTCGAGACGAAGAACCGCTTCAAGGTGAAGAACTCACTGGGCCAGAATGT
GTACTTCGCGTACGAGGAGAGCGACTGCTGCACCCGCAACATGCTCGGCC
GGTCGCGCCCCTTCGAGATGAAGATACTGGACAATTTTCAGAACGAGGTG
CTCCACCTGTACCGGCCCTTCAAGTGCGACATCCTCTGCTGCTTTCCCAG
CTGCATGAACGCCGTGGAGGTGTCGGCGCCACCCGGCCAGGTGATCGGTA
GCGTTGAGCAGGTCTGCACCTTCATGCGGCCCAAGTTCAACATCAAGAAC
ACATGCGGCGATACCGTCCTGCAGATCGAGGGACCCGTCTGTCCCTGCAA
GTGCTTCAGCGATACCAACTTCAAGGTATTGAGCGCCAACAACGAGGAGA
TCGGCAAAATCAGCAAACAATGGTCCGGACTGGGAAGGGAGCTGTTCACC
GATGCGGACTACTTCAGCGTCACCTTCCCCCTGAATCTGGATGTCCGCAT
GAAGGCGCTCATATTCGCAGCGCTCTTTTTGATTGACGCGGTTTACTACG
AGCAGTAGAAGCTTTCTAGACCAT

BS07168.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
scramb2-RA 792 CG1893-PA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
scramb2-RA 1586 CG1893-RA 62..853 17..808 3960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3045721..3046217 627..131 2485 100 Minus
3L 28110227 3L 3044972..3045133 785..624 810 100 Minus
3L 28110227 3L 3046637..3046751 131..17 575 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:11:50 has no hits.

BS07168.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:11 Download gff for BS07168.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 60..860 17..820 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:44 Download gff for BS07168.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 62..853 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:42 Download gff for BS07168.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 60..860 17..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:28 Download gff for BS07168.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 62..853 17..808 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:28 Download gff for BS07168.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3044846..3044869 785..808 100 <- Minus
3L 3044973..3045131 626..784 100 <- Minus
3L 3045723..3046216 132..625 100 <- Minus
3L 3046637..3046751 17..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:44 Download gff for BS07168.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3046637..3046751 17..131 100   Minus
arm_3L 3044846..3044869 785..808 100 <- Minus
arm_3L 3044973..3045131 626..784 100 <- Minus
arm_3L 3045723..3046216 132..625 100 <- Minus

BS07168.pep Sequence

Translation from 16 to 807

> BS07168.pep
MMQMSEYKVLPQNAPQDENGAVVLQPQAANVGNNANGPENWMSIPVGMPN
CPQGLEYLTALDQLLVSQKIEKLELLTGFETKNRFKVKNSLGQNVYFAYE
ESDCCTRNMLGRSRPFEMKILDNFQNEVLHLYRPFKCDILCCFPSCMNAV
EVSAPPGQVIGSVEQVCTFMRPKFNIKNTCGDTVLQIEGPVCPCKCFSDT
NFKVLSANNEEIGKISKQWSGLGRELFTDADYFSVTFPLNLDVRMKALIF
AALFLIDAVYYEQ*

BS07168.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
scramb2-PA 263 CG1893-PA 1..263 1..263 1404 100 Plus
scramb1-PA 416 CG32056-PA 182..404 40..263 761 59.8 Plus
scramb1-PB 233 CG32056-PB 1..221 42..263 749 59.9 Plus
scramb1-PC 332 CG32056-PC 101..320 43..263 744 59.7 Plus
CG9084-PB 275 CG9084-PB 67..272 54..262 231 30.8 Plus