Clone Sequence Records
BS07169.3prime Sequence
910 bp (859 high quality bases) assembled on 2006-01-06
> BS07169.3prime
ATGGTCTAGAAAGCTTTTAACGATTAGAACCACAAAGACTTATTACACGA
TCGTAGACCAAGGATCGAACGTCCTTTGAGATCGTGAAGTCGAAGTGCGA
GAATCCTTCGAAGCGAATGTTCCTGTTTTCTATGCAGTTGGGCAGGTCCC
GCTCCAGTCGAAGGACATCCGATTCGGATCCCAACCAGTCGCCATCTCCG
CGGTGAAGAGCCACCTTGCCCAGTGCCAGGGAAAGGTTGTAAAGTGGGGG
AAAGATCGACTGGTAGCGTATCTTATTCAGAATTAGCCCGTAGTCGTACT
TTTGGAAAGCAGAATTGCCCTGCAATTGGGCGAAGTGATAGATCTGCTTG
GCGGAGCTTCCCTGCGAGGCGTGACCTTCCAAAATGGGGGATAGTGTCAT
ATTGAAGCTGTTGAAGTTAAATCCGCACACCACAAATTCAAAGATGGCAC
AGATGCGACTGGGGATAAGTTTGGTGCAGATGTGGTTACGGAACATGTCA
ACAATCTTGTTTTTCAGGGAGATCTTGTGGCCGCCCAAGAGATTCAACAA
CATTGTGAAGCCACCCGAAAATAATTTCATAAACTTAAGTGCTGGACTGC
GTGTTCCTTCCATATAAACTGATGGCGAGAGGGACTGCATCAATGAGATC
TTGCCTGCATACTCAGGCCTTTCACTACACATCACAAAGAAGGCCGTGGA
TCCCTGCGAGTGACCAATGTACTGGATGCTCGGCATTTTAGTCTGCAGCA
GGATCAAGTCGATGGCAGCGGGTAGATCGTACTGCCCGATCTCGTGGAAG
GAGAAGTCCCAGAAGATCTTGTCGCTCTCCCGACCGGCCAGGCGCTCCTC
CGAGTAAACGTTACCCCTTGTTGTCAACATCCAGACGTCGTAGCCGCTTT
GGGACAGGAT
BS07169.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18284-PA | 1374 | CG18284-RA | 481..1374 | 910..17 | 4420 | 99.7 | Minus |
| CG31872-PA | 3222 | CG31872-RA | 2676..3200 | 566..42 | 2225 | 96.9 | Minus |
| CG31872-PA | 3222 | CG31872-RA | 2332..2667 | 910..575 | 1530 | 98.2 | Minus |
| CG17097-PC | 1239 | CG17097-RC | 435..461 | 812..786 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18284-RB | 1460 | CG18284-RB | 505..1404 | 910..11 | 4455 | 99.7 | Minus |
| CG18284-RC | 1539 | CG18284-RC | 505..1404 | 910..11 | 4455 | 99.7 | Minus |
| CG31872-RB | 3401 | CG31872-RB | 2347..3215 | 910..42 | 3940 | 97 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:30:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10645369..10645756 | 398..11 | 1925 | 99.7 | Minus |
| 2L | 23513712 | 2L | 10644741..10645097 | 910..554 | 1755 | 99.4 | Minus |
| 2L | 23513712 | 2L | 10642997..10643353 | 398..42 | 1710 | 98.6 | Minus |
| 2L | 23513712 | 2L | 10642360..10642716 | 910..554 | 1620 | 96.9 | Minus |
| 2L | 23513712 | 2L | 10645160..10645315 | 553..398 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 10642793..10642939 | 544..398 | 615 | 94.6 | Minus |
| 2L | 23513712 | 2L | 10649023..10649179 | 812..656 | 230 | 76.4 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:30:07 has no hits.
BS07169.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:26 Download gff for
BS07169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-PA | 481..1374 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:29 Download gff for
BS07169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-PA | 481..1374 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:01:33 Download gff for
BS07169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-RC | 505..1407 | 5..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:09:19 Download gff for
BS07169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-RC | 505..1407 | 5..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:09:19 Download gff for
BS07169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10644741..10645097 | 554..910 | 99 | -> | Minus |
| 2L | 10645160..10645315 | 398..553 | 100 | -> | Minus |
| 2L | 10645370..10645759 | 5..397 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:01:33 Download gff for
BS07169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10644741..10645097 | 554..910 | 99 | -> | Minus |
| arm_2L | 10645160..10645315 | 398..553 | 100 | -> | Minus |
| arm_2L | 10645370..10645759 | 5..397 | 98 | | Minus |
BS07169.5prime Sequence
893 bp (818 high quality bases) assembled on 2006-01-06
> BS07169.5prime
GAAGTTATCAGTCGACATGGCGATCGCATTTAATATTGCGATCTATGCAA
TAATTTTAGTGGGTAGTTTGGTACCCAGCAAGACTCAGGAATGGGTTCCA
TATGCATATCCTGTAGATGAAAATCAAGGATTGAATGAACAGACACAGTG
GCAGTCACAATCACAGATTCAGAGTCAAGGGACGTCACAATCACAAAGTC
AAGCTCAAATTCAATCACAGCCTGAACCAAGGTCATGTTTACAATGTCAA
CAAGCTAGTTACCAACAATTCTTTGCGGAGGTGGACATCCAGATCGACGC
CAAGCTGGAGACGCCCAAAATGATCTCAAAATATGGACATCAAGTAGAGA
CCCATTACGCATTCACTGCCGACGGCTACAAGCTCTGCCTGCATCGGATT
CCGCGGTCTGGAGCTACACCCGTCCTATTGGTCCATGGCCTGATGGCCAG
CTCGGCCACTTGGGTGCAGTTCGGTCCATCCCAGGGTCTGGCCTACATCC
TGTCCCAAAGCGGCTACGACGTCTGGATGTTGAACACAAGGGGTAACGTT
TACTCGGAGGAGCGCCTGGCCGGTCGGGAGAGCGACAAGATCTTCTGGGA
CTTCTCCTTCCACGAGATCGGGCAGTACGATCTACCCGCTGCCATCGACT
TGATCCTGCTGCAGACTAAAATGCCGAGCATCCAGTACATTGGTCACTCG
CAGGGATCCACGGCCTTCTTTGTGATGTGTAGTGAAAGGCCTGAGTATGC
AGGCAAGATCTCATTGATGCAGTCCCTCTCGCCATCAGTTTATATGGAAG
GAACACGCAGTCCAGCACTTTAGTTTATGAAATTATTTTCGGGTGGCTTC
ACAATGTTGTTGAATCTCTTGGGCGGCCACAAGATCTCCCTGA
BS07169.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18284-PA | 1374 | CG18284-RA | 1..877 | 17..893 | 4360 | 99.8 | Plus |
| CG31872-PA | 3222 | CG31872-RA | 2087..2667 | 252..832 | 2405 | 96.5 | Plus |
| CG31872-PA | 3222 | CG31872-RA | 2676..2728 | 841..893 | 165 | 92.4 | Plus |
| CG17097-PC | 1239 | CG17097-RC | 435..461 | 595..621 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18284-RB | 1460 | CG18284-RB | 21..901 | 13..893 | 4375 | 99.8 | Plus |
| CG18284-RC | 1539 | CG18284-RC | 21..901 | 13..893 | 4375 | 99.8 | Plus |
| CG31872-RB | 3401 | CG31872-RB | 2067..2743 | 217..893 | 2830 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10644557..10645097 | 313..853 | 2690 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10642176..10642716 | 313..853 | 2450 | 96.9 | Plus |
| 2L | 23513712 | 2L | 10643991..10644150 | 13..172 | 785 | 99.4 | Plus |
| 2L | 23513712 | 2L | 10644340..10644485 | 168..313 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 10641997..10642093 | 217..313 | 245 | 83.5 | Plus |
| 2L | 23513712 | 2L | 10649023..10649179 | 595..751 | 230 | 76.4 | Plus |
| 2L | 23513712 | 2L | 10645160..10645199 | 854..893 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:39:09 has no hits.
BS07169.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:27 Download gff for
BS07169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:31 Download gff for
BS07169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:26:55 Download gff for
BS07169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-RC | 21..900 | 13..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:58 Download gff for
BS07169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-RC | 21..900 | 13..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:58 Download gff for
BS07169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10644345..10644485 | 173..313 | 100 | -> | Plus |
| 2L | 10643991..10644150 | 13..172 | 99 | -> | Plus |
| 2L | 10644558..10645097 | 314..853 | 99 | -> | Plus |
| 2L | 10645160..10645198 | 854..892 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:26:55 Download gff for
BS07169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10643991..10644150 | 13..172 | 99 | -> | Plus |
| arm_2L | 10644345..10644485 | 173..313 | 100 | -> | Plus |
| arm_2L | 10644558..10645097 | 314..853 | 99 | -> | Plus |
| arm_2L | 10645160..10645198 | 854..892 | 100 | | Plus |
BS07169.complete Sequence
1406 bp (1406 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ638800
> BS07169.complete
GAAGTTATCAGTCGACATGGCGATCGCATTTAATATTGCGATCTATGCAA
TAATTTTAGTGGGTAGTTTGGTACCCAGCAAGACTCAGGAATGGGTTCCA
TATGCATATCCTGTAGATGAAAATCAAGGATTGAATGAACAGACACAGTG
GCAGTCACAATCACAGATTCAGAGTCAAGGGACGTCACAATCACAAAGTC
AAGCTCAAATTCAATCACAGCCTGAACCAAGGTCATGTTTACAATGTCAA
CAAGCTAGTTACCAACAATTCTTTGCGGAGGTGGACATCCAGATCGACGC
CAAGCTGGAGACGCCCAAAATGATCTCAAAATATGGACATCAAGTAGAGA
CCCATTACGCATTCACTGCCGACGGCTACAAGCTCTGCCTGCATCGGATT
CCGCGGTCTGGAGCTACACCCGTCCTATTGGTCCATGGCCTGATGGCCAG
CTCGGCCACTTGGGTGCAGTTCGGTCCATCCCAGGGTCTGGCCTACATCC
TGTCCCAAAGCGGCTACGACGTCTGGATGTTGAACACAAGGGGTAACGTT
TACTCGGAGGAGCGCCTGGCCGGTCGGGAGAGCGACAAGATCTTCTGGGA
CTTCTCCTTCCACGAGATCGGGCAGTACGATCTACCCGCTGCCATCGACT
TGATCCTGCTGCAGACTAAAATGCCGAGCATCCAGTACATTGGTCACTCG
CAGGGATCCACGGCCTTCTTTGTGATGTGTAGTGAAAGGCCTGAGTATGC
AGGCAAGATCTCATTGATGCAGTCCCTCTCGCCATCAGTTTATATGGAAG
GAACACGCAGTCCAGCACTTAAGTTTATGAAATTATTTTCGGGTGGCTTC
ACAATGTTGTTGAATCTCTTGGGCGGCCACAAGATCTCCCTGAAAAACAA
GATTGTTGACATGTTCCGTAACCACATCTGCACCAAACTTATCCCCAGTC
GCATCTGTGCCATCTTTGAATTTGTGGTGTGCGGATTTAACTTCAACAGC
TTCAATATGACACTATCCCCCATTTTGGAAGGTCACGCCTCGCAGGGAAG
CTCCGCCAAGCAGATCTATCACTTCGCCCAATTGCAGGGCAATTCTGCTT
TCCAAAAGTACGACTACGGGCTAATTCTGAATAAGATACGCTACCAGTCG
ATCTTTCCCCCACTTTACAACCTTTCCCTGGCACTGGGCAAGGTGGCTCT
TCACCGCGGAGATGGCGACTGGTTGGGATCCGAATCGGATGTCCTTCGAC
TGGAGCGGGACCTGCCCAACTGCATAGAAAACAGGAACATTCGCTTCGAA
GGATTCTCGCACTTCGACTTCACGATCTCAAAGGACGTTCGATCCTTGGT
CTACGATCGTGTAATAAGTCTTTGTGGTTCTAATCGTTAAAAGCTTTCTA
GACCAT
BS07169.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18284-RB | 1374 | CG18284-PB | 1..1374 | 17..1390 | 6870 | 100 | Plus |
| CG18284-RC | 1374 | CG18284-PC | 1..1374 | 17..1390 | 6870 | 100 | Plus |
| CG31872-RB | 3222 | CG31872-PB | 2052..3200 | 217..1365 | 5025 | 95.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18284-RB | 1460 | CG18284-RB | 21..1404 | 13..1396 | 6890 | 99.9 | Plus |
| CG18284-RC | 1539 | CG18284-RC | 21..1404 | 13..1396 | 6890 | 99.9 | Plus |
| CG31872-RB | 3401 | CG31872-RB | 2067..3215 | 217..1365 | 5025 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10644557..10645097 | 313..853 | 2705 | 100 | Plus |
| 2L | 23513712 | 2L | 10642176..10642716 | 313..853 | 2465 | 97 | Plus |
| 2L | 23513712 | 2L | 10645369..10645756 | 1009..1396 | 1925 | 99.7 | Plus |
| 2L | 23513712 | 2L | 10642997..10643353 | 1009..1365 | 1710 | 98.6 | Plus |
| 2L | 23513712 | 2L | 10643991..10644150 | 13..172 | 785 | 99.4 | Plus |
| 2L | 23513712 | 2L | 10645160..10645315 | 854..1009 | 780 | 100 | Plus |
| 2L | 23513712 | 2L | 10644340..10644485 | 168..313 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 10642793..10642939 | 863..1009 | 615 | 94.6 | Plus |
| 2L | 23513712 | 2L | 10641997..10642093 | 217..313 | 245 | 83.5 | Plus |
| 2L | 23513712 | 2L | 10649023..10649179 | 595..751 | 230 | 76.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:44:26 has no hits.
BS07169.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:49 Download gff for
BS07169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-RA | 1..1374 | 17..1390 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:58 Download gff for
BS07169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-RA | 9..1395 | 13..1402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:32 Download gff for
BS07169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-RC | 25..1396 | 17..1388 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:49 Download gff for
BS07169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-RA | 9..1395 | 13..1402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:18 Download gff for
BS07169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-RC | 25..1396 | 17..1388 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:18 Download gff for
BS07169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10643995..10644150 | 17..172 | 100 | -> | Plus |
| 2L | 10644345..10644485 | 173..313 | 100 | -> | Plus |
| 2L | 10644558..10645097 | 314..853 | 100 | -> | Plus |
| 2L | 10645160..10645315 | 854..1009 | 100 | -> | Plus |
| 2L | 10645370..10645748 | 1010..1388 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:32 Download gff for
BS07169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10643995..10644150 | 17..172 | 100 | -> | Plus |
| arm_2L | 10644345..10644485 | 173..313 | 100 | -> | Plus |
| arm_2L | 10644558..10645097 | 314..853 | 100 | -> | Plus |
| arm_2L | 10645160..10645315 | 854..1009 | 100 | -> | Plus |
| arm_2L | 10645370..10645748 | 1010..1388 | 100 | | Plus |
BS07169.pep Sequence
Translation from 16 to 1389
> BS07169.pep
MAIAFNIAIYAIILVGSLVPSKTQEWVPYAYPVDENQGLNEQTQWQSQSQ
IQSQGTSQSQSQAQIQSQPEPRSCLQCQQASYQQFFAEVDIQIDAKLETP
KMISKYGHQVETHYAFTADGYKLCLHRIPRSGATPVLLVHGLMASSATWV
QFGPSQGLAYILSQSGYDVWMLNTRGNVYSEERLAGRESDKIFWDFSFHE
IGQYDLPAAIDLILLQTKMPSIQYIGHSQGSTAFFVMCSERPEYAGKISL
MQSLSPSVYMEGTRSPALKFMKLFSGGFTMLLNLLGGHKISLKNKIVDMF
RNHICTKLIPSRICAIFEFVVCGFNFNSFNMTLSPILEGHASQGSSAKQI
YHFAQLQGNSAFQKYDYGLILNKIRYQSIFPPLYNLSLALGKVALHRGDG
DWLGSESDVLRLERDLPNCIENRNIRFEGFSHFDFTISKDVRSLVYDRVI
SLCGSNR*
BS07169.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18284-PB | 457 | CG18284-PB | 1..457 | 1..457 | 2390 | 100 | Plus |
| CG18284-PC | 457 | CG18284-PC | 1..457 | 1..457 | 2390 | 100 | Plus |
| CG31872-PB | 1073 | CG31872-PB | 637..1073 | 39..456 | 2006 | 88.8 | Plus |
| CG31872-PA | 1073 | CG31872-PA | 637..1073 | 39..456 | 2006 | 88.8 | Plus |
| CG17097-PB | 1087 | CG17097-PB | 624..1078 | 39..450 | 1283 | 56.5 | Plus |
