Clone Sequence Records
BS07171.3prime Sequence
947 bp (811 high quality bases) assembled on 2006-01-06
> BS07171.3prime
ATGGTCTAGAAAGCTTTTATTTGGCGAGCTTCTCCACTTTAAGGTGGATA
CCATTCTCGGCCGATATCAGAATGTTCTTAACGACAATCTTCATGGGTAT
TTGAGTTTCCGGGGAAACACTGAATTTATAGCCCCTGATCAAGTAGGCCA
AGCCCACACAGGTTTGCATCATTCCAAACCGCAGACCAATGCAGTTCCGC
GGACCTTCTCCAAATGGAAGCCAAGTGCACGAGGGTCTCGCCGCGATTTC
CTCGTCGGTAAAGCGTTCTGGCTTGAATATCTCCGGTTCCGGATATATGT
CCGGATCATAGTGAATGCCCAAAGCTGGGATCACAACAATGGTTCCCTTG
GCAATGAAGTATTTTGGATCTTCAGGCGAAAAGTCGGTGTCAGTCATTCT
TGTAAGATGAGCCAGTACTGGGTACTTTCGCAGCGTTTCCATCACAACCT
GCTCCAGGTATTTCATCTCCTTGATTCCCTCGTAGGTGAACTCTTTGTTA
TGCTTGCCGAACACATTGCCAATCTCCTCCCTGAGTTTATCCTGAACATC
CTGGTTCCTGGCCAGCTCATATAGAGCGAATCCCATGGTCGTGGAGCTTG
TCTCAAACCCAGCCACAAAAAATATGAAAGCCTGAGCGAGAAGTTCGTTA
AAGGTCAGGCCATCCTCCGAATTTCCCGACTGCTCATTCTTATACATCTC
TATCAGACTGTCCATGAAATCATTTCGCTTTTCCTTCGTCCGTAGACGGT
AGTCAATGGTTTCCCTCACGATCTTGGTGTAAAAGTCCTCTGCCTCCTGG
ATATTTAGTTTCAGACGTAAGCGGCGCGATAACTTGGGAAATCCAAAGAG
GAATATATCCAGCATATTCCCGTAGCGATGCTCGGTGATCGCCCGCTTTG
CCATTGACACAAATTCAGCCTTTGGATCGTACAAGCTGTTTGCATTG
BS07171.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10241-PA | 1506 | Cyp6a17-RA | 625..1506 | 898..17 | 4410 | 100 | Minus |
CG10242-PA | 1509 | Cyp6a23-RA | 1144..1246 | 382..280 | 290 | 91.2 | Minus |
CG10242-PA | 1509 | Cyp6a23-RA | 1279..1382 | 247..144 | 220 | 88.4 | Minus |
CG10241-PA | 1506 | Cyp6a17-RA | 583..620 | 940..903 | 190 | 100 | Minus |
CG10242-PA | 1509 | Cyp6a23-RA | 1027..1091 | 499..435 | 150 | 89.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a17-RB | 1727 | CG10241-RB | 610..1533 | 940..17 | 4575 | 99.8 | Minus |
Cyp6a17-RA | 1546 | CG10241-RA | 610..1533 | 940..17 | 4575 | 99.8 | Minus |
Cyp6a23-RA | 1761 | CG10242-RA | 714..1539 | 844..19 | 1715 | 80.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14874562..14875063 | 940..439 | 2465 | 99.4 | Minus |
2R | 25286936 | 2R | 14875123..14875545 | 439..17 | 2115 | 100 | Minus |
2R | 25286936 | 2R | 14877012..14877432 | 439..19 | 1070 | 83.6 | Minus |
2R | 25286936 | 2R | 14876542..14876947 | 844..439 | 650 | 77.3 | Minus |
2R | 25286936 | 2R | 14882993..14883122 | 663..534 | 290 | 81.5 | Minus |
2R | 25286936 | 2R | 14878691..14878785 | 634..540 | 220 | 82.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:00:09 has no hits.
BS07171.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:31 Download gff for
BS07171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10241-PA | 576..1506 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:35 Download gff for
BS07171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10241-PA | 576..1506 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:00:52 Download gff for
BS07171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 603..1542 | 4..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:05 Download gff for
BS07171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 603..1542 | 4..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:05 Download gff for
BS07171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14874555..14875063 | 439..947 | 99 | -> | Minus |
2R | 14875124..14875554 | 4..438 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:00:52 Download gff for
BS07171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10762060..10762568 | 439..947 | 99 | -> | Minus |
arm_2R | 10762629..10763059 | 4..438 | 98 | | Minus |
BS07171.5prime Sequence
802 bp (801 high quality bases) assembled on 2006-01-06
> BS07171.5prime
GAAGTTATCAGTCGACATGTTGTTACTGGCGCTAATCGTTGTGATACTAT
CACTGCTCGTCTTCGCGGCCCGACGACGTCATGGATACTGGCAGAGAAGG
GGCATACCGCACGACGAGGTACACCCGCTTTTCGGAAACATCAAGGACTG
GCCAAATAAGCGGCACATTGCCGAGATCTTTCGGGACTATTACTTCAAGT
ACAAGAACTCCGATTACCCATTCGCTGGATTTTTCTTCTTTTTCACCCGC
ACTGCTGTGGTCACCGACATGGAATTGCTCAAGAGGGTGCTGATCAAGGA
CTTCAATCACTTTGAGAATCGGGGAGTCTTCTACAACGAGATCGATGATC
CGCTGTCGGCCACCTTGTTCAGCATCGAGGGTCAGAAGTGGCGTCATCTG
CGGCACAAACTGACACCCACTTTTACGTCCGGCAAAATGAAGAACATGTT
TCCGATTGTTGTGAAAGTTGGAGAAGAAATGGATAAGGTCTTCAGAAGTA
AAACCGCTGCGGATCGGGGTCAAGTTTTGGAGGTTGTGGATCTGGTGGCA
CGGTACACCGCCGATGTGATCGGCAACTGCGCATTCGGTCTCAATTGCAA
CAGCTTGTACGATCCAAAGGCTGAATTTGTGTCAATTGGCAAGCGGGCGA
TCACCGAGCATCGCTACGGGAATATGCTGGATATATTCCTCTTTGGATTT
CCCAAGTTATCGCGCCGCTTACGTCTGAAACTAAATATCCAGGAGGCAGA
GGACTTTTACACCAAGATCGTGAGGGAAACCATTGACTACCGTCTACGGA
CG
BS07171.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10241-PA | 1506 | Cyp6a17-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
CG10242-PA | 1509 | Cyp6a23-RA | 222..470 | 235..483 | 870 | 93.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a17-RB | 1727 | CG10241-RB | 28..813 | 17..802 | 3930 | 100 | Plus |
Cyp6a17-RA | 1546 | CG10241-RA | 28..813 | 17..802 | 3930 | 100 | Plus |
Cyp6a23-RA | 1761 | CG10242-RA | 69..811 | 50..792 | 1530 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14873980..14874765 | 17..802 | 3930 | 100 | Plus |
2R | 25286936 | 2R | 14875897..14876639 | 50..792 | 1510 | 80.2 | Plus |
2R | 25286936 | 2R | 14878162..14878240 | 373..451 | 185 | 82.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:34:17 has no hits.
BS07171.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:32 Download gff for
BS07171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10241-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:37 Download gff for
BS07171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10241-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:01:38 Download gff for
BS07171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 23..813 | 11..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:23:08 Download gff for
BS07171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 23..813 | 11..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:23:08 Download gff for
BS07171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14873975..14874765 | 11..802 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:01:38 Download gff for
BS07171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10761480..10762270 | 11..802 | 99 | | Plus |
BS07171.complete Sequence
1538 bp (1538 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635751
> BS07171.complete
GAAGTTATCAGTCGACATGTTGTTACTGGCGCTAATCGTTGTGATACTAT
CACTGCTCGTCTTCGCGGCCCGACGACGTCATGGATACTGGCAGAGAAGG
GGCATACCGCACGACGAGGTACACCCGCTTTTCGGAAACATCAAGGACTG
GCCAAATAAGCGGCACATTGCCGAGATCTTTCGGGACTATTACTTCAAGT
ACAAGAACTCCGATTACCCATTCGCTGGATTTTTCTTCTTTTTCACCCGC
ACTGCTGTGGTCACCGACATGGAATTGCTCAAGAGGGTGCTGATCAAGGA
CTTCAATCACTTTGAGAATCGGGGAGTCTTCTACAACGAGATCGATGATC
CGCTGTCGGCCACCTTGTTCAGCATCGAGGGTCAGAAGTGGCGTCATCTG
CGGCACAAACTGACACCCACTTTTACGTCCGGCAAAATGAAGAACATGTT
TCCGATTGTTGTGAAAGTTGGAGAAGAAATGGATAAGGTCTTCAGAAGTA
AAACCGCTGCGGATCGGGGTCAAGTTTTGGAGGTTGTGGATCTGGTGGCA
CGGTACACCGCCGATGTGATCGGCAACTGCGCATTCGGTCTCAATTGCAA
CAGCTTGTACGATCCAAAGGCTGAATTTGTGTCAATTGGCAAGCGGGCGA
TCACCGAGCATCGCTACGGGAATATGCTGGATATATTCCTCTTTGGATTT
CCCAAGTTATCGCGCCGCTTACGTCTGAAACTAAATATCCAGGAGGCAGA
GGACTTTTACACCAAGATCGTGAGGGAAACCATTGACTACCGTCTACGGA
CGAAGGAAAAGCGAAATGATTTCATGGACAGTCTGATAGAGATGTATAAG
AATGAGCAGTCGGGAAATTCGGAGGATGGCCTGACCTTTAACGAACTTCT
CGCTCAGGCTTTCATATTTTTTGTGGCTGGGTTTGAGACAAGCTCCACGA
CCATGGGATTCGCTCTATATGAGCTGGCCAGGAACCAGGATGTTCAGGAT
AAACTCAGGGAGGAGATTGGCAATGTGTTCGGCAAGCATAACAAAGAGTT
CACCTACGAGGGAATCAAGGAGATGAAATACCTGGAGCAGGTTGTGATGG
AAACGCTGCGAAAGTACCCAGTACTGGCTCATCTTACAAGAATGACTGAC
ACCGACTTTTCGCCTGAAGATCCAAAATACTTCATTGCCAAGGGAACCAT
TGTTGTGATCCCAGCTTTGGGCATTCACTATGATCCGGACATATATCCGG
AACCGGAGATATTCAAGCCAGAACGCTTTACCGACGAGGAAATCGCGGCG
AGACCCTCGTGCACTTGGCTTCCATTTGGAGAAGGTCCGCGGAACTGCAT
TGGTCTGCGGTTTGGAATGATGCAAACCTGTGTGGGCTTGGCCTACTTGA
TCAGGGGCTATAAATTCAGTGTTTCCCCGGAAACTCAAATACCCATGAAG
ATTGTCGTTAAGAACATTCTGATATCGGCCGAGAATGGTATCCACCTTAA
AGTGGAGAAGCTCGCCAAATAAAAGCTTTCTAGACCAT
BS07171.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a17-RB | 1506 | CG10241-PB | 1..1506 | 17..1522 | 7530 | 100 | Plus |
Cyp6a17-RA | 1506 | CG10241-PA | 1..1506 | 17..1522 | 7530 | 100 | Plus |
Cyp6a23-RA | 1509 | CG10242-PA | 37..1507 | 50..1520 | 3080 | 80.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a17-RB | 1727 | CG10241-RB | 28..1533 | 17..1522 | 7530 | 100 | Plus |
Cyp6a17-RA | 1546 | CG10241-RA | 28..1533 | 17..1522 | 7530 | 100 | Plus |
Cyp6a23-RA | 1761 | CG10242-RA | 69..1539 | 50..1520 | 3080 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14873980..14875063 | 17..1100 | 5420 | 100 | Plus |
2R | 25286936 | 2R | 14875123..14875545 | 1100..1522 | 2115 | 100 | Plus |
2R | 25286936 | 2R | 14875897..14876947 | 50..1100 | 2015 | 79.4 | Plus |
2R | 25286936 | 2R | 14877012..14877432 | 1100..1520 | 1070 | 83.6 | Plus |
2R | 25286936 | 2R | 14882993..14883122 | 876..1005 | 290 | 81.5 | Plus |
2R | 25286936 | 2R | 14878691..14878785 | 905..999 | 220 | 82.1 | Plus |
2R | 25286936 | 2R | 14878162..14878240 | 373..451 | 185 | 82.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:51:34 has no hits.
BS07171.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:50 Download gff for
BS07171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 1..1506 | 17..1522 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:00 Download gff for
BS07171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 1..1523 | 11..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:41 Download gff for
BS07171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 33..1531 | 22..1520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:51 Download gff for
BS07171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 1..1523 | 11..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:17 Download gff for
BS07171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6a17-RA | 33..1531 | 22..1520 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:17 Download gff for
BS07171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14873985..14875063 | 22..1100 | 100 | -> | Plus |
2R | 14875124..14875543 | 1101..1520 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:41 Download gff for
BS07171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10761490..10762568 | 22..1100 | 100 | -> | Plus |
arm_2R | 10762629..10763048 | 1101..1520 | 100 | | Plus |
BS07171.pep Sequence
Translation from 16 to 1521
> BS07171.pep
MLLLALIVVILSLLVFAARRRHGYWQRRGIPHDEVHPLFGNIKDWPNKRH
IAEIFRDYYFKYKNSDYPFAGFFFFFTRTAVVTDMELLKRVLIKDFNHFE
NRGVFYNEIDDPLSATLFSIEGQKWRHLRHKLTPTFTSGKMKNMFPIVVK
VGEEMDKVFRSKTAADRGQVLEVVDLVARYTADVIGNCAFGLNCNSLYDP
KAEFVSIGKRAITEHRYGNMLDIFLFGFPKLSRRLRLKLNIQEAEDFYTK
IVRETIDYRLRTKEKRNDFMDSLIEMYKNEQSGNSEDGLTFNELLAQAFI
FFVAGFETSSTTMGFALYELARNQDVQDKLREEIGNVFGKHNKEFTYEGI
KEMKYLEQVVMETLRKYPVLAHLTRMTDTDFSPEDPKYFIAKGTIVVIPA
LGIHYDPDIYPEPEIFKPERFTDEEIAARPSCTWLPFGEGPRNCIGLRFG
MMQTCVGLAYLIRGYKFSVSPETQIPMKIVVKNILISAENGIHLKVEKLA
K*
BS07171.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6a17-PB | 501 | CG10241-PB | 1..501 | 1..501 | 2630 | 100 | Plus |
Cyp6a17-PA | 501 | CG10241-PA | 1..501 | 1..501 | 2630 | 100 | Plus |
Cyp6a23-PA | 502 | CG10242-PA | 3..502 | 2..501 | 2283 | 84.4 | Plus |
Cyp6a20-PB | 501 | CG10245-PB | 3..501 | 2..499 | 1434 | 52.8 | Plus |
Cyp6a19-PA | 503 | CG10243-PA | 3..502 | 2..501 | 1370 | 50.7 | Plus |