Clone BS07171 Report

Search the DGRC for BS07171

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCyp6a17-RA
Protein status:BS07171.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07171.3prime Sequence

947 bp (811 high quality bases) assembled on 2006-01-06

> BS07171.3prime
ATGGTCTAGAAAGCTTTTATTTGGCGAGCTTCTCCACTTTAAGGTGGATA
CCATTCTCGGCCGATATCAGAATGTTCTTAACGACAATCTTCATGGGTAT
TTGAGTTTCCGGGGAAACACTGAATTTATAGCCCCTGATCAAGTAGGCCA
AGCCCACACAGGTTTGCATCATTCCAAACCGCAGACCAATGCAGTTCCGC
GGACCTTCTCCAAATGGAAGCCAAGTGCACGAGGGTCTCGCCGCGATTTC
CTCGTCGGTAAAGCGTTCTGGCTTGAATATCTCCGGTTCCGGATATATGT
CCGGATCATAGTGAATGCCCAAAGCTGGGATCACAACAATGGTTCCCTTG
GCAATGAAGTATTTTGGATCTTCAGGCGAAAAGTCGGTGTCAGTCATTCT
TGTAAGATGAGCCAGTACTGGGTACTTTCGCAGCGTTTCCATCACAACCT
GCTCCAGGTATTTCATCTCCTTGATTCCCTCGTAGGTGAACTCTTTGTTA
TGCTTGCCGAACACATTGCCAATCTCCTCCCTGAGTTTATCCTGAACATC
CTGGTTCCTGGCCAGCTCATATAGAGCGAATCCCATGGTCGTGGAGCTTG
TCTCAAACCCAGCCACAAAAAATATGAAAGCCTGAGCGAGAAGTTCGTTA
AAGGTCAGGCCATCCTCCGAATTTCCCGACTGCTCATTCTTATACATCTC
TATCAGACTGTCCATGAAATCATTTCGCTTTTCCTTCGTCCGTAGACGGT
AGTCAATGGTTTCCCTCACGATCTTGGTGTAAAAGTCCTCTGCCTCCTGG
ATATTTAGTTTCAGACGTAAGCGGCGCGATAACTTGGGAAATCCAAAGAG
GAATATATCCAGCATATTCCCGTAGCGATGCTCGGTGATCGCCCGCTTTG
CCATTGACACAAATTCAGCCTTTGGATCGTACAAGCTGTTTGCATTG

BS07171.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10241-PA 1506 Cyp6a17-RA 625..1506 898..17 4410 100 Minus
CG10242-PA 1509 Cyp6a23-RA 1144..1246 382..280 290 91.2 Minus
CG10242-PA 1509 Cyp6a23-RA 1279..1382 247..144 220 88.4 Minus
CG10241-PA 1506 Cyp6a17-RA 583..620 940..903 190 100 Minus
CG10242-PA 1509 Cyp6a23-RA 1027..1091 499..435 150 89.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a17-RB 1727 CG10241-RB 610..1533 940..17 4575 99.8 Minus
Cyp6a17-RA 1546 CG10241-RA 610..1533 940..17 4575 99.8 Minus
Cyp6a23-RA 1761 CG10242-RA 714..1539 844..19 1715 80.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14874562..14875063 940..439 2465 99.4 Minus
2R 25286936 2R 14875123..14875545 439..17 2115 100 Minus
2R 25286936 2R 14877012..14877432 439..19 1070 83.6 Minus
2R 25286936 2R 14876542..14876947 844..439 650 77.3 Minus
2R 25286936 2R 14882993..14883122 663..534 290 81.5 Minus
2R 25286936 2R 14878691..14878785 634..540 220 82.1 Minus
Blast to na_te.dros performed on 2015-02-11 10:00:09 has no hits.

BS07171.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:31 Download gff for BS07171.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10241-PA 576..1506 17..947 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:35 Download gff for BS07171.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10241-PA 576..1506 17..947 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:00:52 Download gff for BS07171.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 603..1542 4..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:05 Download gff for BS07171.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 603..1542 4..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:05 Download gff for BS07171.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14874555..14875063 439..947 99 -> Minus
2R 14875124..14875554 4..438 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:00:52 Download gff for BS07171.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10762060..10762568 439..947 99 -> Minus
arm_2R 10762629..10763059 4..438 98   Minus

BS07171.5prime Sequence

802 bp (801 high quality bases) assembled on 2006-01-06

> BS07171.5prime
GAAGTTATCAGTCGACATGTTGTTACTGGCGCTAATCGTTGTGATACTAT
CACTGCTCGTCTTCGCGGCCCGACGACGTCATGGATACTGGCAGAGAAGG
GGCATACCGCACGACGAGGTACACCCGCTTTTCGGAAACATCAAGGACTG
GCCAAATAAGCGGCACATTGCCGAGATCTTTCGGGACTATTACTTCAAGT
ACAAGAACTCCGATTACCCATTCGCTGGATTTTTCTTCTTTTTCACCCGC
ACTGCTGTGGTCACCGACATGGAATTGCTCAAGAGGGTGCTGATCAAGGA
CTTCAATCACTTTGAGAATCGGGGAGTCTTCTACAACGAGATCGATGATC
CGCTGTCGGCCACCTTGTTCAGCATCGAGGGTCAGAAGTGGCGTCATCTG
CGGCACAAACTGACACCCACTTTTACGTCCGGCAAAATGAAGAACATGTT
TCCGATTGTTGTGAAAGTTGGAGAAGAAATGGATAAGGTCTTCAGAAGTA
AAACCGCTGCGGATCGGGGTCAAGTTTTGGAGGTTGTGGATCTGGTGGCA
CGGTACACCGCCGATGTGATCGGCAACTGCGCATTCGGTCTCAATTGCAA
CAGCTTGTACGATCCAAAGGCTGAATTTGTGTCAATTGGCAAGCGGGCGA
TCACCGAGCATCGCTACGGGAATATGCTGGATATATTCCTCTTTGGATTT
CCCAAGTTATCGCGCCGCTTACGTCTGAAACTAAATATCCAGGAGGCAGA
GGACTTTTACACCAAGATCGTGAGGGAAACCATTGACTACCGTCTACGGA
CG

BS07171.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10241-PA 1506 Cyp6a17-RA 1..786 17..802 3930 100 Plus
CG10242-PA 1509 Cyp6a23-RA 222..470 235..483 870 93.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a17-RB 1727 CG10241-RB 28..813 17..802 3930 100 Plus
Cyp6a17-RA 1546 CG10241-RA 28..813 17..802 3930 100 Plus
Cyp6a23-RA 1761 CG10242-RA 69..811 50..792 1530 80.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14873980..14874765 17..802 3930 100 Plus
2R 25286936 2R 14875897..14876639 50..792 1510 80.2 Plus
2R 25286936 2R 14878162..14878240 373..451 185 82.3 Plus
Blast to na_te.dros performed on 2015-02-12 12:34:17 has no hits.

BS07171.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:32 Download gff for BS07171.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10241-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:37 Download gff for BS07171.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10241-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:01:38 Download gff for BS07171.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 23..813 11..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:23:08 Download gff for BS07171.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 23..813 11..802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:23:08 Download gff for BS07171.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14873975..14874765 11..802 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:01:38 Download gff for BS07171.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10761480..10762270 11..802 99   Plus

BS07171.complete Sequence

1538 bp (1538 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635751

> BS07171.complete
GAAGTTATCAGTCGACATGTTGTTACTGGCGCTAATCGTTGTGATACTAT
CACTGCTCGTCTTCGCGGCCCGACGACGTCATGGATACTGGCAGAGAAGG
GGCATACCGCACGACGAGGTACACCCGCTTTTCGGAAACATCAAGGACTG
GCCAAATAAGCGGCACATTGCCGAGATCTTTCGGGACTATTACTTCAAGT
ACAAGAACTCCGATTACCCATTCGCTGGATTTTTCTTCTTTTTCACCCGC
ACTGCTGTGGTCACCGACATGGAATTGCTCAAGAGGGTGCTGATCAAGGA
CTTCAATCACTTTGAGAATCGGGGAGTCTTCTACAACGAGATCGATGATC
CGCTGTCGGCCACCTTGTTCAGCATCGAGGGTCAGAAGTGGCGTCATCTG
CGGCACAAACTGACACCCACTTTTACGTCCGGCAAAATGAAGAACATGTT
TCCGATTGTTGTGAAAGTTGGAGAAGAAATGGATAAGGTCTTCAGAAGTA
AAACCGCTGCGGATCGGGGTCAAGTTTTGGAGGTTGTGGATCTGGTGGCA
CGGTACACCGCCGATGTGATCGGCAACTGCGCATTCGGTCTCAATTGCAA
CAGCTTGTACGATCCAAAGGCTGAATTTGTGTCAATTGGCAAGCGGGCGA
TCACCGAGCATCGCTACGGGAATATGCTGGATATATTCCTCTTTGGATTT
CCCAAGTTATCGCGCCGCTTACGTCTGAAACTAAATATCCAGGAGGCAGA
GGACTTTTACACCAAGATCGTGAGGGAAACCATTGACTACCGTCTACGGA
CGAAGGAAAAGCGAAATGATTTCATGGACAGTCTGATAGAGATGTATAAG
AATGAGCAGTCGGGAAATTCGGAGGATGGCCTGACCTTTAACGAACTTCT
CGCTCAGGCTTTCATATTTTTTGTGGCTGGGTTTGAGACAAGCTCCACGA
CCATGGGATTCGCTCTATATGAGCTGGCCAGGAACCAGGATGTTCAGGAT
AAACTCAGGGAGGAGATTGGCAATGTGTTCGGCAAGCATAACAAAGAGTT
CACCTACGAGGGAATCAAGGAGATGAAATACCTGGAGCAGGTTGTGATGG
AAACGCTGCGAAAGTACCCAGTACTGGCTCATCTTACAAGAATGACTGAC
ACCGACTTTTCGCCTGAAGATCCAAAATACTTCATTGCCAAGGGAACCAT
TGTTGTGATCCCAGCTTTGGGCATTCACTATGATCCGGACATATATCCGG
AACCGGAGATATTCAAGCCAGAACGCTTTACCGACGAGGAAATCGCGGCG
AGACCCTCGTGCACTTGGCTTCCATTTGGAGAAGGTCCGCGGAACTGCAT
TGGTCTGCGGTTTGGAATGATGCAAACCTGTGTGGGCTTGGCCTACTTGA
TCAGGGGCTATAAATTCAGTGTTTCCCCGGAAACTCAAATACCCATGAAG
ATTGTCGTTAAGAACATTCTGATATCGGCCGAGAATGGTATCCACCTTAA
AGTGGAGAAGCTCGCCAAATAAAAGCTTTCTAGACCAT

BS07171.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a17-RB 1506 CG10241-PB 1..1506 17..1522 7530 100 Plus
Cyp6a17-RA 1506 CG10241-PA 1..1506 17..1522 7530 100 Plus
Cyp6a23-RA 1509 CG10242-PA 37..1507 50..1520 3080 80.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a17-RB 1727 CG10241-RB 28..1533 17..1522 7530 100 Plus
Cyp6a17-RA 1546 CG10241-RA 28..1533 17..1522 7530 100 Plus
Cyp6a23-RA 1761 CG10242-RA 69..1539 50..1520 3080 80.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14873980..14875063 17..1100 5420 100 Plus
2R 25286936 2R 14875123..14875545 1100..1522 2115 100 Plus
2R 25286936 2R 14875897..14876947 50..1100 2015 79.4 Plus
2R 25286936 2R 14877012..14877432 1100..1520 1070 83.6 Plus
2R 25286936 2R 14882993..14883122 876..1005 290 81.5 Plus
2R 25286936 2R 14878691..14878785 905..999 220 82.1 Plus
2R 25286936 2R 14878162..14878240 373..451 185 82.3 Plus
Blast to na_te.dros performed on 2014-11-27 06:51:34 has no hits.

BS07171.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:50 Download gff for BS07171.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 1..1506 17..1522 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:54:00 Download gff for BS07171.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 1..1523 11..1535 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:41 Download gff for BS07171.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 33..1531 22..1520 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:51 Download gff for BS07171.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 1..1523 11..1535 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:17 Download gff for BS07171.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6a17-RA 33..1531 22..1520 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:17 Download gff for BS07171.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14873985..14875063 22..1100 100 -> Plus
2R 14875124..14875543 1101..1520 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:41 Download gff for BS07171.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10761490..10762568 22..1100 100 -> Plus
arm_2R 10762629..10763048 1101..1520 100   Plus

BS07171.pep Sequence

Translation from 16 to 1521

> BS07171.pep
MLLLALIVVILSLLVFAARRRHGYWQRRGIPHDEVHPLFGNIKDWPNKRH
IAEIFRDYYFKYKNSDYPFAGFFFFFTRTAVVTDMELLKRVLIKDFNHFE
NRGVFYNEIDDPLSATLFSIEGQKWRHLRHKLTPTFTSGKMKNMFPIVVK
VGEEMDKVFRSKTAADRGQVLEVVDLVARYTADVIGNCAFGLNCNSLYDP
KAEFVSIGKRAITEHRYGNMLDIFLFGFPKLSRRLRLKLNIQEAEDFYTK
IVRETIDYRLRTKEKRNDFMDSLIEMYKNEQSGNSEDGLTFNELLAQAFI
FFVAGFETSSTTMGFALYELARNQDVQDKLREEIGNVFGKHNKEFTYEGI
KEMKYLEQVVMETLRKYPVLAHLTRMTDTDFSPEDPKYFIAKGTIVVIPA
LGIHYDPDIYPEPEIFKPERFTDEEIAARPSCTWLPFGEGPRNCIGLRFG
MMQTCVGLAYLIRGYKFSVSPETQIPMKIVVKNILISAENGIHLKVEKLA
K*

BS07171.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6a17-PB 501 CG10241-PB 1..501 1..501 2630 100 Plus
Cyp6a17-PA 501 CG10241-PA 1..501 1..501 2630 100 Plus
Cyp6a23-PA 502 CG10242-PA 3..502 2..501 2283 84.4 Plus
Cyp6a20-PB 501 CG10245-PB 3..501 2..499 1434 52.8 Plus
Cyp6a19-PA 503 CG10243-PA 3..502 2..501 1370 50.7 Plus