Clone Sequence Records
BS07173.3prime Sequence
900 bp (856 high quality bases) assembled on 2006-01-06
> BS07173.3prime
ATGGTCTAGAAAGCTTCTAGTACTTCTTTAGTTGTTCGTAGGTAATAAAA
AATATGATATTCCACGGGCCCATCCTCACCCAGGTGGGAATGAAACCTTT
GTACAGGGCGGGTAGACCTTCGTTCCTGATAGTCTGTACAGCACAGTCTA
GGCTGCCGCTATACAGCTTTGGTGTGGCTGCTGCCGTGACCACTCCATTC
ATTGTTATGCTAACGGGACGCTGGTTCATCAGGCGCGTCCGGATTACATC
AATAGGCGTTGAGGCAATGGCACTGCCTAGACTGGCAATAAAGCTCGAGA
TGAAATGATTGCCAACGTGATCTCCGAAGGCATTCATTAACTGCAGCTTG
CAAAAGTCGTAGACGGGCAGCTCAACGGAGGCGATAACTACGGCACGCTG
AGCCGTCGGACCCACACCACGCCACAGTCCACGAACGCCCTCGTATTTGT
AGATCTCACCGAAGCAGCCCAGCAGGCCCTTGTGCTGTCCCTTCCCATGC
ACCTGCATTCGCACTTTCAGCACGTCCGTGGGGTTAGCAATGGCCGAAGA
GATCGCTCCCGCCGCCGCCGCGCACAAAATATTGCTCCACACACGCTCGC
TGCCGTCCTCGTTGATCAGCAAGCCGCGTTCGTTGGCCAGCTTCTTCAGG
GTGTAGTAGGTTCCAAACTTGATGGTGCCATAGGTCGCTTGTCTCANAAC
TGCTGGCCAAATACCGGAATAGAGGGCCCTCAGCCCCTCCTCGCGGGAGA
TTTTTACAAAGGCATCGGTCATGCCGCGATATCGCAGCTGCGAGAACGAT
TGGTCGATTTTCTGACCTTGGATTTGGAGGCGCGTCTTCGTCGTGTCGAT
AGGAAAGGTGCCAAATTCCGCCGTGATTGAGGCGACTCCGCCGTAACGAA
BS07173.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7314-PA | 912 | Bmcp-RA | 33..912 | 896..17 | 4381 | 99.8 | Minus |
CG7314-PB | 912 | Bmcp-RB | 33..912 | 896..17 | 4381 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bmcp-RB | 1687 | CG7314-RB | 224..1103 | 896..17 | 4389 | 99.9 | Minus |
Bmcp-RA | 1618 | CG7314-RA | 224..1103 | 896..17 | 4389 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11722004..11722418 | 714..300 | 2064 | 99.8 | Minus |
3L | 28110227 | 3L | 11722588..11722810 | 239..17 | 1115 | 100 | Minus |
3L | 28110227 | 3L | 11721316..11721464 | 862..714 | 745 | 100 | Minus |
3L | 28110227 | 3L | 11722465..11722532 | 306..239 | 310 | 97.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:26:39 has no hits.
BS07173.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:36 Download gff for
BS07173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-PA | 30..912 | 17..898 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:41 Download gff for
BS07173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7314-PB | 30..912 | 17..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:38:14 Download gff for
BS07173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RA | 219..1106 | 13..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:43 Download gff for
BS07173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RA | 219..1106 | 13..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:43 Download gff for
BS07173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11721152..11721191 | 862..900 | 97 | -> | Minus |
3L | 11721317..11721464 | 714..861 | 100 | -> | Minus |
3L | 11722005..11722418 | 300..713 | 99 | -> | Minus |
3L | 11722472..11722532 | 239..299 | 100 | -> | Minus |
3L | 11722589..11722813 | 13..238 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:38:14 Download gff for
BS07173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11714252..11714291 | 862..900 | 97 | -> | Minus |
arm_3L | 11714417..11714564 | 714..861 | 100 | -> | Minus |
arm_3L | 11715105..11715518 | 300..713 | 99 | -> | Minus |
arm_3L | 11715572..11715632 | 239..299 | 100 | -> | Minus |
arm_3L | 11715689..11715913 | 13..238 | 99 | | Minus |
BS07173.5prime Sequence
906 bp (815 high quality bases) assembled on 2006-01-06
> BS07173.5prime
GAAGTTATCAGTCGACATGGGTGAAGTGAAGGATTGGCGGCCCTTCGTTT
ACGGCGGAGTCGCCTCAATCACGGCGGAATTTGGCACCTTTCCTATCGAC
ACGACGAAGACGCGCCTCCAAATCCAAGGTCAGAAAATCGACCAATCGTT
CTCGCAGCTGCGATATCGCGGCATGACCGATGCCTTTGTAAAAATCTCCC
GCGAGGAGGGGCTGAGGGCCCTCTATTCCGGTATTTGGCCAGCAGTTTTG
AGACAAGCGACCTATGGCACCATCAAGTTTGGAACCTACTACACCCTGAA
GAAGCTGGCCAACGAACGCGGCTTGCTGATCAACGAGGACGGCAGCGAGC
GTGTGTGGAGCAATATTTTGTGCGCGGCGGCGGCGGGAGCGATCTCTTCG
GCCATTGCTAACCCCACGGACGTGCTGAAAGTGCGAATGCAGGTGCATGG
GAAGGGACAGCACAAGGGCCTGCTGGGCTGCTTCGGTGAGATCTACAAAT
ACGAGGGCGTTCGTGGACTGTGGCGTGGTGTGGGTCCGACGGCTCAGCGT
GCCGTAGTTATCGCCTCCGTTGAGCTGCCCGTCTACGACTTTTGCAAGCT
GCAGTTAATGAATGCCTTCGGAGATCACGTTGGCAATCATTTCATCTCGA
GCTTTATTGCCAGTCTAGGCAGTGCCATTGCCTCAACGCCTATTGATGTA
ATCCGGACGCGCCTGATGAACCAGCGTCCCGTTAGCATAACAATGAATGG
AGTGGTCACGGCAGCAGCCACACCAAAGCTGTATAGCGGCAGCCTAGACT
GTGCTGTACAGACTATCAGGAACGAAGGTCTACCCGCCCTGTACAAAGGT
TTTCATCCCACCTGGGTGAGGATGGGGCCGTGGAATATCATATTTTTTAT
TACCTA
BS07173.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7314-PA | 912 | Bmcp-RA | 1..836 | 17..852 | 4180 | 100 | Plus |
CG7314-PB | 912 | Bmcp-RB | 1..836 | 17..852 | 4180 | 100 | Plus |
CG7314-PA | 912 | Bmcp-RA | 840..890 | 856..906 | 230 | 98 | Plus |
CG7314-PB | 912 | Bmcp-RB | 840..890 | 856..906 | 230 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bmcp-RB | 1687 | CG7314-RB | 192..1081 | 17..906 | 4390 | 99.7 | Plus |
Bmcp-RA | 1618 | CG7314-RA | 192..1081 | 17..906 | 4390 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11722004..11722418 | 231..645 | 2075 | 100 | Plus |
3L | 28110227 | 3L | 11722588..11722788 | 706..906 | 945 | 98 | Plus |
3L | 28110227 | 3L | 11721316..11721464 | 83..231 | 745 | 100 | Plus |
3L | 28110227 | 3L | 11721125..11721192 | 17..84 | 340 | 100 | Plus |
3L | 28110227 | 3L | 11722465..11722532 | 639..706 | 310 | 97.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:43:25 has no hits.
BS07173.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:37 Download gff for
BS07173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:42 Download gff for
BS07173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7314-PB | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:38:40 Download gff for
BS07173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RA | 189..1080 | 14..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:20:58 Download gff for
BS07173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RA | 189..1080 | 14..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:20:58 Download gff for
BS07173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11722589..11722787 | 707..905 | 98 | | Plus |
3L | 11721119..11721191 | 11..83 | 94 | -> | Plus |
3L | 11721317..11721464 | 84..231 | 100 | -> | Plus |
3L | 11722005..11722418 | 232..645 | 100 | -> | Plus |
3L | 11722472..11722532 | 646..706 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:38:40 Download gff for
BS07173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11714219..11714291 | 11..83 | 94 | -> | Plus |
arm_3L | 11714417..11714564 | 84..231 | 100 | -> | Plus |
arm_3L | 11715105..11715518 | 232..645 | 100 | -> | Plus |
arm_3L | 11715572..11715632 | 646..706 | 100 | -> | Plus |
arm_3L | 11715689..11715887 | 707..905 | 98 | | Plus |
BS07173.complete Sequence
944 bp (944 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635752
> BS07173.complete
GAAGTTATCAGTCGACATGGGTGAAGTGAAGGATTGGCGGCCCTTCGTTT
ACGGCGGAGTCGCCTCAATCACGGCGGAATTTGGCACCTTTCCTATCGAC
ACGACGAAGACGCGCCTCCAAATCCAAGGTCAGAAAATCGACCAATCGTT
CTCGCAGCTGCGATATCGCGGCATGACCGATGCCTTTGTAAAAATCTCCC
GCGAGGAGGGGCTGAGGGCCCTCTATTCCGGTATTTGGCCAGCAGTTTTG
AGACAAGCGACCTATGGCACCATCAAGTTTGGAACCTACTACACCCTGAA
GAAGCTGGCCAACGAACGCGGCTTGCTGATCAACGAGGACGGCAGCGAGC
GTGTGTGGAGCAATATTTTGTGCGCGGCGGCGGCGGGAGCGATCTCTTCG
GCCATTGCTAACCCCACGGACGTGCTGAAAGTGCGAATGCAGGTGCATGG
GAAGGGACAGCACAAGGGCCTGCTGGGCTGCTTCGGTGAGATCTACAAAT
ACGAGGGCGTTCGTGGACTGTGGCGTGGTGTGGGTCCGACGGCTCAGCGT
GCCGTAGTTATCGCCTCCGTTGAGCTGCCCGTCTACGACTTTTGCAAGCT
GCAGTTAATGAATGCCTTCGGAGATCACGTTGGCAATCATTTCATCTCGA
GCTTTATTGCCAGTCTAGGCAGTGCCATTGCCTCAACGCCTATTGATGTA
ATCCGGACGCGCCTGATGAACCAGCGTCCCGTTAGCATAACAATGAATGG
AGTGGTCACGGCAGCAGCCACACCAAAGCTGTATAGCGGCAGCCTAGACT
GTGCTGTACAGACTATCAGGAACGAAGGTCTACCCGCCCTGTACAAAGGT
TTCATTCCCACCTGGGTGAGGATGGGCCCGTGGAATATCATATTTTTTAT
TACCTACGAACAACTAAAGAAGTACTAGAAGCTTTCTAGACCAT
BS07173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bmcp-RB | 912 | CG7314-PB | 1..912 | 17..928 | 4560 | 100 | Plus |
Bmcp-RA | 912 | CG7314-PA | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bmcp-RB | 1687 | CG7314-RB | 192..1103 | 17..928 | 4560 | 100 | Plus |
Bmcp-RA | 1618 | CG7314-RA | 192..1103 | 17..928 | 4560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11722004..11722418 | 231..645 | 2075 | 100 | Plus |
3L | 28110227 | 3L | 11722588..11722810 | 706..928 | 1115 | 100 | Plus |
3L | 28110227 | 3L | 11721316..11721464 | 83..231 | 745 | 100 | Plus |
3L | 28110227 | 3L | 11721125..11721192 | 17..84 | 340 | 100 | Plus |
3L | 28110227 | 3L | 11722465..11722532 | 639..706 | 310 | 97.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:52:14 has no hits.
BS07173.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:43 Download gff for
BS07173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RB | 1..912 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:13 Download gff for
BS07173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RB | 203..1120 | 14..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:16 Download gff for
BS07173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RA | 192..1103 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:43 Download gff for
BS07173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RB | 203..1120 | 14..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:33 Download gff for
BS07173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RA | 192..1103 | 17..928 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:33 Download gff for
BS07173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11721125..11721191 | 17..83 | 100 | -> | Plus |
3L | 11721317..11721464 | 84..231 | 100 | -> | Plus |
3L | 11722005..11722418 | 232..645 | 100 | -> | Plus |
3L | 11722472..11722532 | 646..706 | 100 | -> | Plus |
3L | 11722589..11722810 | 707..928 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:16 Download gff for
BS07173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11714225..11714291 | 17..83 | 100 | -> | Plus |
arm_3L | 11714417..11714564 | 84..231 | 100 | -> | Plus |
arm_3L | 11715105..11715518 | 232..645 | 100 | -> | Plus |
arm_3L | 11715572..11715632 | 646..706 | 100 | -> | Plus |
arm_3L | 11715689..11715910 | 707..928 | 100 | | Plus |
BS07173.pep Sequence
Translation from 16 to 927
> BS07173.pep
MGEVKDWRPFVYGGVASITAEFGTFPIDTTKTRLQIQGQKIDQSFSQLRY
RGMTDAFVKISREEGLRALYSGIWPAVLRQATYGTIKFGTYYTLKKLANE
RGLLINEDGSERVWSNILCAAAAGAISSAIANPTDVLKVRMQVHGKGQHK
GLLGCFGEIYKYEGVRGLWRGVGPTAQRAVVIASVELPVYDFCKLQLMNA
FGDHVGNHFISSFIASLGSAIASTPIDVIRTRLMNQRPVSITMNGVVTAA
ATPKLYSGSLDCAVQTIRNEGLPALYKGFIPTWVRMGPWNIIFFITYEQL
KKY*
BS07173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bmcp-PB | 303 | CG7314-PB | 1..303 | 1..303 | 1579 | 100 | Plus |
Bmcp-PA | 303 | CG7314-PA | 1..303 | 1..303 | 1579 | 100 | Plus |
Ucp4A-PB | 340 | CG6492-PB | 44..333 | 10..302 | 496 | 36.5 | Plus |
Ucp4A-PA | 340 | CG6492-PA | 44..333 | 10..302 | 496 | 36.5 | Plus |
Ucp4B-PA | 337 | CG18340-PA | 46..331 | 16..303 | 457 | 34.7 | Plus |