Clone BS07173 Report

Search the DGRC for BS07173

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptBmcp-RA
Protein status:BS07173.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07173.3prime Sequence

900 bp (856 high quality bases) assembled on 2006-01-06

> BS07173.3prime
ATGGTCTAGAAAGCTTCTAGTACTTCTTTAGTTGTTCGTAGGTAATAAAA
AATATGATATTCCACGGGCCCATCCTCACCCAGGTGGGAATGAAACCTTT
GTACAGGGCGGGTAGACCTTCGTTCCTGATAGTCTGTACAGCACAGTCTA
GGCTGCCGCTATACAGCTTTGGTGTGGCTGCTGCCGTGACCACTCCATTC
ATTGTTATGCTAACGGGACGCTGGTTCATCAGGCGCGTCCGGATTACATC
AATAGGCGTTGAGGCAATGGCACTGCCTAGACTGGCAATAAAGCTCGAGA
TGAAATGATTGCCAACGTGATCTCCGAAGGCATTCATTAACTGCAGCTTG
CAAAAGTCGTAGACGGGCAGCTCAACGGAGGCGATAACTACGGCACGCTG
AGCCGTCGGACCCACACCACGCCACAGTCCACGAACGCCCTCGTATTTGT
AGATCTCACCGAAGCAGCCCAGCAGGCCCTTGTGCTGTCCCTTCCCATGC
ACCTGCATTCGCACTTTCAGCACGTCCGTGGGGTTAGCAATGGCCGAAGA
GATCGCTCCCGCCGCCGCCGCGCACAAAATATTGCTCCACACACGCTCGC
TGCCGTCCTCGTTGATCAGCAAGCCGCGTTCGTTGGCCAGCTTCTTCAGG
GTGTAGTAGGTTCCAAACTTGATGGTGCCATAGGTCGCTTGTCTCANAAC
TGCTGGCCAAATACCGGAATAGAGGGCCCTCAGCCCCTCCTCGCGGGAGA
TTTTTACAAAGGCATCGGTCATGCCGCGATATCGCAGCTGCGAGAACGAT
TGGTCGATTTTCTGACCTTGGATTTGGAGGCGCGTCTTCGTCGTGTCGAT
AGGAAAGGTGCCAAATTCCGCCGTGATTGAGGCGACTCCGCCGTAACGAA

BS07173.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7314-PA 912 Bmcp-RA 33..912 896..17 4381 99.8 Minus
CG7314-PB 912 Bmcp-RB 33..912 896..17 4381 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Bmcp-RB 1687 CG7314-RB 224..1103 896..17 4389 99.9 Minus
Bmcp-RA 1618 CG7314-RA 224..1103 896..17 4389 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11722004..11722418 714..300 2064 99.8 Minus
3L 28110227 3L 11722588..11722810 239..17 1115 100 Minus
3L 28110227 3L 11721316..11721464 862..714 745 100 Minus
3L 28110227 3L 11722465..11722532 306..239 310 97.1 Minus
Blast to na_te.dros performed on 2015-02-10 21:26:39 has no hits.

BS07173.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:36 Download gff for BS07173.3prime
Subject Subject Range Query Range Percent Splice Strand
Bmcp-PA 30..912 17..898 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:41 Download gff for BS07173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7314-PB 30..912 17..898 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:38:14 Download gff for BS07173.3prime
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RA 219..1106 13..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:43 Download gff for BS07173.3prime
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RA 219..1106 13..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:43 Download gff for BS07173.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11721152..11721191 862..900 97 -> Minus
3L 11721317..11721464 714..861 100 -> Minus
3L 11722005..11722418 300..713 99 -> Minus
3L 11722472..11722532 239..299 100 -> Minus
3L 11722589..11722813 13..238 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:38:14 Download gff for BS07173.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11714252..11714291 862..900 97 -> Minus
arm_3L 11714417..11714564 714..861 100 -> Minus
arm_3L 11715105..11715518 300..713 99 -> Minus
arm_3L 11715572..11715632 239..299 100 -> Minus
arm_3L 11715689..11715913 13..238 99   Minus

BS07173.5prime Sequence

906 bp (815 high quality bases) assembled on 2006-01-06

> BS07173.5prime
GAAGTTATCAGTCGACATGGGTGAAGTGAAGGATTGGCGGCCCTTCGTTT
ACGGCGGAGTCGCCTCAATCACGGCGGAATTTGGCACCTTTCCTATCGAC
ACGACGAAGACGCGCCTCCAAATCCAAGGTCAGAAAATCGACCAATCGTT
CTCGCAGCTGCGATATCGCGGCATGACCGATGCCTTTGTAAAAATCTCCC
GCGAGGAGGGGCTGAGGGCCCTCTATTCCGGTATTTGGCCAGCAGTTTTG
AGACAAGCGACCTATGGCACCATCAAGTTTGGAACCTACTACACCCTGAA
GAAGCTGGCCAACGAACGCGGCTTGCTGATCAACGAGGACGGCAGCGAGC
GTGTGTGGAGCAATATTTTGTGCGCGGCGGCGGCGGGAGCGATCTCTTCG
GCCATTGCTAACCCCACGGACGTGCTGAAAGTGCGAATGCAGGTGCATGG
GAAGGGACAGCACAAGGGCCTGCTGGGCTGCTTCGGTGAGATCTACAAAT
ACGAGGGCGTTCGTGGACTGTGGCGTGGTGTGGGTCCGACGGCTCAGCGT
GCCGTAGTTATCGCCTCCGTTGAGCTGCCCGTCTACGACTTTTGCAAGCT
GCAGTTAATGAATGCCTTCGGAGATCACGTTGGCAATCATTTCATCTCGA
GCTTTATTGCCAGTCTAGGCAGTGCCATTGCCTCAACGCCTATTGATGTA
ATCCGGACGCGCCTGATGAACCAGCGTCCCGTTAGCATAACAATGAATGG
AGTGGTCACGGCAGCAGCCACACCAAAGCTGTATAGCGGCAGCCTAGACT
GTGCTGTACAGACTATCAGGAACGAAGGTCTACCCGCCCTGTACAAAGGT
TTTCATCCCACCTGGGTGAGGATGGGGCCGTGGAATATCATATTTTTTAT
TACCTA

BS07173.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7314-PA 912 Bmcp-RA 1..836 17..852 4180 100 Plus
CG7314-PB 912 Bmcp-RB 1..836 17..852 4180 100 Plus
CG7314-PA 912 Bmcp-RA 840..890 856..906 230 98 Plus
CG7314-PB 912 Bmcp-RB 840..890 856..906 230 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
Bmcp-RB 1687 CG7314-RB 192..1081 17..906 4390 99.7 Plus
Bmcp-RA 1618 CG7314-RA 192..1081 17..906 4390 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11722004..11722418 231..645 2075 100 Plus
3L 28110227 3L 11722588..11722788 706..906 945 98 Plus
3L 28110227 3L 11721316..11721464 83..231 745 100 Plus
3L 28110227 3L 11721125..11721192 17..84 340 100 Plus
3L 28110227 3L 11722465..11722532 639..706 310 97.1 Plus
Blast to na_te.dros performed on 2015-02-10 23:43:25 has no hits.

BS07173.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:37 Download gff for BS07173.5prime
Subject Subject Range Query Range Percent Splice Strand
Bmcp-PA 1..889 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:42 Download gff for BS07173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7314-PB 1..889 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:38:40 Download gff for BS07173.5prime
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RA 189..1080 14..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:20:58 Download gff for BS07173.5prime
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RA 189..1080 14..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:20:58 Download gff for BS07173.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11722589..11722787 707..905 98   Plus
3L 11721119..11721191 11..83 94 -> Plus
3L 11721317..11721464 84..231 100 -> Plus
3L 11722005..11722418 232..645 100 -> Plus
3L 11722472..11722532 646..706 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:38:40 Download gff for BS07173.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11714219..11714291 11..83 94 -> Plus
arm_3L 11714417..11714564 84..231 100 -> Plus
arm_3L 11715105..11715518 232..645 100 -> Plus
arm_3L 11715572..11715632 646..706 100 -> Plus
arm_3L 11715689..11715887 707..905 98   Plus

BS07173.complete Sequence

944 bp (944 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635752

> BS07173.complete
GAAGTTATCAGTCGACATGGGTGAAGTGAAGGATTGGCGGCCCTTCGTTT
ACGGCGGAGTCGCCTCAATCACGGCGGAATTTGGCACCTTTCCTATCGAC
ACGACGAAGACGCGCCTCCAAATCCAAGGTCAGAAAATCGACCAATCGTT
CTCGCAGCTGCGATATCGCGGCATGACCGATGCCTTTGTAAAAATCTCCC
GCGAGGAGGGGCTGAGGGCCCTCTATTCCGGTATTTGGCCAGCAGTTTTG
AGACAAGCGACCTATGGCACCATCAAGTTTGGAACCTACTACACCCTGAA
GAAGCTGGCCAACGAACGCGGCTTGCTGATCAACGAGGACGGCAGCGAGC
GTGTGTGGAGCAATATTTTGTGCGCGGCGGCGGCGGGAGCGATCTCTTCG
GCCATTGCTAACCCCACGGACGTGCTGAAAGTGCGAATGCAGGTGCATGG
GAAGGGACAGCACAAGGGCCTGCTGGGCTGCTTCGGTGAGATCTACAAAT
ACGAGGGCGTTCGTGGACTGTGGCGTGGTGTGGGTCCGACGGCTCAGCGT
GCCGTAGTTATCGCCTCCGTTGAGCTGCCCGTCTACGACTTTTGCAAGCT
GCAGTTAATGAATGCCTTCGGAGATCACGTTGGCAATCATTTCATCTCGA
GCTTTATTGCCAGTCTAGGCAGTGCCATTGCCTCAACGCCTATTGATGTA
ATCCGGACGCGCCTGATGAACCAGCGTCCCGTTAGCATAACAATGAATGG
AGTGGTCACGGCAGCAGCCACACCAAAGCTGTATAGCGGCAGCCTAGACT
GTGCTGTACAGACTATCAGGAACGAAGGTCTACCCGCCCTGTACAAAGGT
TTCATTCCCACCTGGGTGAGGATGGGCCCGTGGAATATCATATTTTTTAT
TACCTACGAACAACTAAAGAAGTACTAGAAGCTTTCTAGACCAT

BS07173.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
Bmcp-RB 912 CG7314-PB 1..912 17..928 4560 100 Plus
Bmcp-RA 912 CG7314-PA 1..912 17..928 4560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
Bmcp-RB 1687 CG7314-RB 192..1103 17..928 4560 100 Plus
Bmcp-RA 1618 CG7314-RA 192..1103 17..928 4560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11722004..11722418 231..645 2075 100 Plus
3L 28110227 3L 11722588..11722810 706..928 1115 100 Plus
3L 28110227 3L 11721316..11721464 83..231 745 100 Plus
3L 28110227 3L 11721125..11721192 17..84 340 100 Plus
3L 28110227 3L 11722465..11722532 639..706 310 97.1 Plus
Blast to na_te.dros performed on 2014-11-27 14:52:14 has no hits.

BS07173.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:43 Download gff for BS07173.complete
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RB 1..912 17..928 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:13 Download gff for BS07173.complete
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RB 203..1120 14..932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:16 Download gff for BS07173.complete
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RA 192..1103 17..928 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:43 Download gff for BS07173.complete
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RB 203..1120 14..932 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:33 Download gff for BS07173.complete
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RA 192..1103 17..928 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:33 Download gff for BS07173.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11721125..11721191 17..83 100 -> Plus
3L 11721317..11721464 84..231 100 -> Plus
3L 11722005..11722418 232..645 100 -> Plus
3L 11722472..11722532 646..706 100 -> Plus
3L 11722589..11722810 707..928 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:16 Download gff for BS07173.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11714225..11714291 17..83 100 -> Plus
arm_3L 11714417..11714564 84..231 100 -> Plus
arm_3L 11715105..11715518 232..645 100 -> Plus
arm_3L 11715572..11715632 646..706 100 -> Plus
arm_3L 11715689..11715910 707..928 100   Plus

BS07173.pep Sequence

Translation from 16 to 927

> BS07173.pep
MGEVKDWRPFVYGGVASITAEFGTFPIDTTKTRLQIQGQKIDQSFSQLRY
RGMTDAFVKISREEGLRALYSGIWPAVLRQATYGTIKFGTYYTLKKLANE
RGLLINEDGSERVWSNILCAAAAGAISSAIANPTDVLKVRMQVHGKGQHK
GLLGCFGEIYKYEGVRGLWRGVGPTAQRAVVIASVELPVYDFCKLQLMNA
FGDHVGNHFISSFIASLGSAIASTPIDVIRTRLMNQRPVSITMNGVVTAA
ATPKLYSGSLDCAVQTIRNEGLPALYKGFIPTWVRMGPWNIIFFITYEQL
KKY*

BS07173.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Bmcp-PB 303 CG7314-PB 1..303 1..303 1579 100 Plus
Bmcp-PA 303 CG7314-PA 1..303 1..303 1579 100 Plus
Ucp4A-PB 340 CG6492-PB 44..333 10..302 496 36.5 Plus
Ucp4A-PA 340 CG6492-PA 44..333 10..302 496 36.5 Plus
Ucp4B-PA 337 CG18340-PA 46..331 16..303 457 34.7 Plus