Clone Sequence Records
BS07177.3prime Sequence
910 bp (763 high quality bases) assembled on 2006-01-06
> BS07177.3prime
ATGGTCTAGAAAGCTTTCAATATTGCAGAGATGAAACCATATTATCCCTG
CTAACATTCCGGTGAAACTTCTGCTGGTTGATAATCAAGGCGATTCCTGC
GTTCTCCCGGGTCAACTTAAGAGCATCTATTTGTGTGGAACAGTACGACT
GCTGGTTATCCGATTCAATCTCTTGCTTGACTGCCATCGCAGCAGTGCCA
GCCGCATCTGGCTCCGGAGCGTTACTAATGATGGTGTCTTTGAGCAAATT
TGCTTGCGCCTGCAGACCGTTGGACTTCAAATGGCCGACCAGCAGCTGAA
CATCGCTGCCTGCGGCATTTATGTCCCCTAACTTTATGCTCCTTCTGGTC
AGCCAGTCCAGCAAAAAGATCTCCAGGTACGCGGGATCGTAGAAGCGAAG
TGGATCTCCTGCCTGCTGGCTCTCCACCTTTTCGCGAACATCTAGGAGCA
AGCGGCCACTCTGCACCAACGACAACTCCTCACACATCCTGTAGAGGCTC
TTCAACAGAGGATGGACATGCAGCGTGATCCCAGCGATATGCGGCAAGTA
GTGCATTCGCAGCTCCTGCCAGCAGAAACCCAGTCTCCGGAGCACCTTGC
GGGCCCCAATAATGCACAGGGCCTCCACGAGATGTCTTCTCCAGGTTTCT
GGCCGGGACTTGGCGAACTTTATGAGTAGATCACTTTGCGGGAAGTCTGA
TCGTGTCATGGCCAAAAGTTTCTGCAGAATGTAGGTGGCATCCGAGTGGT
CGTCGCCATAAAGCAGAAAGCAGAGGCCCACCTTTTGGGCAAAGTTCATG
TCACGTTCCACGTAGATCAGATCGTTCTGATCGATGGTGTCTAGATGAAT
CAACAGGTTTGATCCGGCCATGGCGATCGGGAATATACAAAAATGTTTCA
CTTTAAGAAA
BS07177.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7486-PC | 921 | Dredd-RC | 33..921 | 905..17 | 4445 | 100 | Minus |
CG7486-PB | 1551 | Dredd-RB | 33..900 | 905..38 | 4340 | 100 | Minus |
CG7486-PA | 1533 | Dredd-RA | 33..882 | 905..56 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:11:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dredd-RF | 1689 | CG7486-RF | 24..917 | 910..17 | 4455 | 99.9 | Minus |
Dredd-RE | 1631 | CG7486-RE | 24..896 | 910..38 | 4350 | 99.9 | Minus |
Dredd-RD | 1613 | CG7486-RD | 24..878 | 910..56 | 4260 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:11:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 634525..635291 | 17..783 | 3835 | 100 | Plus |
X | 23542271 | X | 635392..635522 | 780..910 | 640 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-01-30 14:11:35 has no hits.
BS07177.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:45 Download gff for
BS07177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7486-PC | 31..921 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:53 Download gff for
BS07177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7486-PC | 31..921 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:00:32 Download gff for
BS07177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dredd-RF | 27..917 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:32:33 Download gff for
BS07177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dredd-RF | 27..917 | 17..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:32:33 Download gff for
BS07177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 634525..635289 | 17..781 | 100 | <- | Plus |
X | 635394..635518 | 782..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:00:32 Download gff for
BS07177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 528558..529322 | 17..781 | 100 | <- | Plus |
arm_X | 529427..529551 | 782..907 | 99 | | Plus |
BS07177.5prime Sequence
848 bp (781 high quality bases) assembled on 2006-01-06
> BS07177.5prime
GAAGTTATCAGTCGACATGTCAGCGAGTGCAATTTATCGGCCATTTCCTA
AAGTGAAACATTTTTGTATATTCCCGATCGCCATGGCCGGATCAAACCTG
TTGATTCATCTAGACACCATCGATCAGAACGATCTGATCTACGTGGAACG
TGACATGAACTTTGCCCAAAAGGTGGGCCTCTGCTTTCTGCTTTATGGCG
ACGACCACTCGGATGCCACCTACATTCTGCAGAAACTTTTGGCCATGACA
CGATCAGACTTCCCGCAAAGTGATCTACTCATAAAGTTCGCCAAGTCCCG
GCCAGAAACCTGGAGAAGACATCTCGTGGAGGCCCTGTGCATTATTGGGG
CCCGCAAGGTGCTCCGGAGACTGGGTTTCTGCTGGCAGGAGCTGCGAATG
CACTACTTGCCGCATATCGCTGGGATCACGCTGCATGTCCATCCTCTGTT
GAAGAGCCTCTACAGGATGTGTGAGGAGTTGTCGTTGGTGCAGAGTGGCC
GCTTGCTCCTAGATGTTCGCGAAAAGGTGGAGAGCCAGCAGGCAGGAGAT
CCACTTCGCTTCTACGATCCCGCGTACCTGGAGATCTTTTTGCTGGACTG
GCTGACCAGAAGGAGCATAAAGTTAGGGGACATAAATGCCGCAGGCAGCG
ATGTTCAGCTGCTGGTCGGCCATTTGAAGTCCAACGGTCTGCAGGCGCAA
GCAAATTTGCTCAAAGACACCATCATTAGTAACGCTCCGGAGCCAGATGC
GGCTGGCACTGCTGCGATGGCAGTCAAGCAAGAGATTGAATCGGATAACC
AGCAGTCGTACTGTTCCACACAAATAGATGCTCTTAAGTTGACCCGGG
BS07177.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7486-PB | 1551 | Dredd-RB | 1..832 | 17..848 | 4160 | 100 | Plus |
CG7486-PC | 921 | Dredd-RC | 1..832 | 17..848 | 4160 | 100 | Plus |
CG7486-PA | 1533 | Dredd-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dredd-RF | 1689 | CG7486-RF | 1..828 | 21..848 | 4140 | 100 | Plus |
Dredd-RE | 1631 | CG7486-RE | 1..828 | 21..848 | 4140 | 100 | Plus |
Dredd-RD | 1613 | CG7486-RD | 1..828 | 21..848 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 634614..635291 | 848..171 | 3390 | 100 | Minus |
X | 23542271 | X | 635392..635549 | 174..17 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:24:42 has no hits.
BS07177.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:46 Download gff for
BS07177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7486-PB | 1..832 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:54 Download gff for
BS07177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7486-PA | 1..832 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:27 Download gff for
BS07177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dredd-RD | 1..828 | 21..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:18 Download gff for
BS07177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dredd-RD | 1..828 | 21..848 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:18 Download gff for
BS07177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 634614..635289 | 173..848 | 100 | <- | Minus |
X | 635394..635553 | 12..172 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:27 Download gff for
BS07177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 528647..529322 | 173..848 | 100 | <- | Minus |
arm_X | 529427..529586 | 12..172 | 98 | | Minus |
BS07177.complete Sequence
953 bp (953 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635754
> BS07177.complete
GAAGTTATCAGTCGACATGTCAGCGAGTGCAATTTATCGGCCATTTCCTA
AAGTGAAACATTTTTGTATATTCCCGATCGCCATGGCCGGATCAAACCTG
TTGATTCATCTAGACACCATCGATCAGAACGATCTGATCTACGTGGAACG
TGACATGAACTTTGCCCAAAAGGTGGGCCTCTGCTTTCTGCTTTATGGCG
ACGACCACTCGGATGCCACCTACATTCTGCAGAAACTTTTGGCCATGACA
CGATCAGACTTCCCGCAAAGTGATCTACTCATAAAGTTCGCCAAGTCCCG
GCCAGAAACCTGGAGAAGACATCTCGTGGAGGCCCTGTGCATTATTGGGG
CCCGCAAGGTGCTCCGGAGACTGGGTTTCTGCTGGCAGGAGCTGCGAATG
CACTACTTGCCGCATATCGCTGGGATCACGCTGCATGTCCATCCTCTGTT
GAAGAGCCTCTACAGGATGTGTGAGGAGTTGTCGTTGGTGCAGAGTGGCC
GCTTGCTCCTAGATGTTCGCGAAAAGGTGGAGAGCCAGCAGGCAGGAGAT
CCACTTCGCTTCTACGATCCCGCGTACCTGGAGATCTTTTTGCTGGACTG
GCTGACCAGAAGGAGCATAAAGTTAGGGGACATAAATGCCGCAGGCAGCG
ATGTTCAGCTGCTGGTCGGCCATTTGAAGTCCAACGGTCTGCAGGCGCAA
GCAAATTTGCTCAAAGACACCATCATTAGTAACGCTCCGGAGCCAGATGC
GGCTGGCACTGCTGCGATGGCAGTCAAGCAAGAGATTGAATCGGATAACC
AGCAGTCGTACTGTTCCACACAAATAGATGCTCTTAAGTTGACCCGGGAG
AACGCAGGAATCGCCTTGATTATCAACCAGCAGAAGTTTCACCGGAATGT
TAGCAGGGATAATATGGTTTCATCTCTGCAATATTGAAAGCTTTCTAGAC
CAT
BS07177.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dredd-RF | 855 | CG7486-PF | 1..855 | 83..937 | 4275 | 100 | Plus |
Dredd-RE | 1485 | CG7486-PE | 1..834 | 83..916 | 4170 | 100 | Plus |
Dredd-RD | 1467 | CG7486-PD | 1..816 | 83..898 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dredd-RF | 1689 | CG7486-RF | 1..917 | 21..937 | 4585 | 100 | Plus |
Dredd-RE | 1631 | CG7486-RE | 1..896 | 21..916 | 4480 | 100 | Plus |
Dredd-RD | 1613 | CG7486-RD | 1..878 | 21..898 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 634525..635291 | 937..171 | 3835 | 100 | Minus |
X | 23542271 | X | 635392..635549 | 174..17 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:10:45 has no hits.
BS07177.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:26 Download gff for
BS07177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dredd-RF | 1..855 | 83..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:54 Download gff for
BS07177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dredd-RF | 175..1099 | 12..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:11 Download gff for
BS07177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dredd-RF | 1..916 | 21..936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:26 Download gff for
BS07177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dredd-RF | 175..1099 | 12..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:41 Download gff for
BS07177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dredd-RF | 1..916 | 21..936 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:41 Download gff for
BS07177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 634526..635289 | 173..936 | 100 | <- | Minus |
X | 635394..635549 | 17..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:11 Download gff for
BS07177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 528559..529322 | 173..936 | 100 | <- | Minus |
arm_X | 529427..529582 | 17..172 | 100 | | Minus |
BS07177.pep Sequence
Translation from 16 to 936
> BS07177.pep
MSASAIYRPFPKVKHFCIFPIAMAGSNLLIHLDTIDQNDLIYVERDMNFA
QKVGLCFLLYGDDHSDATYILQKLLAMTRSDFPQSDLLIKFAKSRPETWR
RHLVEALCIIGARKVLRRLGFCWQELRMHYLPHIAGITLHVHPLLKSLYR
MCEELSLVQSGRLLLDVREKVESQQAGDPLRFYDPAYLEIFLLDWLTRRS
IKLGDINAAGSDVQLLVGHLKSNGLQAQANLLKDTIISNAPEPDAAGTAA
MAVKQEIESDNQQSYCSTQIDALKLTRENAGIALIINQQKFHRNVSRDNM
VSSLQY*
BS07177.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dredd-PF | 284 | CG7486-PF | 1..284 | 23..306 | 1456 | 100 | Plus |
Dredd-PE | 494 | CG7486-PE | 1..278 | 23..300 | 1428 | 100 | Plus |
Dredd-PD | 488 | CG7486-PD | 1..272 | 23..294 | 1398 | 100 | Plus |
Dredd-PG | 440 | CG7486-PG | 1..224 | 77..300 | 1149 | 100 | Plus |