Clone BS07177 Report

Search the DGRC for BS07177

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptDredd-RF
Protein status:BS07177.pep: gold
Sequenced Size:16

Clone Sequence Records

BS07177.3prime Sequence

910 bp (763 high quality bases) assembled on 2006-01-06

> BS07177.3prime
ATGGTCTAGAAAGCTTTCAATATTGCAGAGATGAAACCATATTATCCCTG
CTAACATTCCGGTGAAACTTCTGCTGGTTGATAATCAAGGCGATTCCTGC
GTTCTCCCGGGTCAACTTAAGAGCATCTATTTGTGTGGAACAGTACGACT
GCTGGTTATCCGATTCAATCTCTTGCTTGACTGCCATCGCAGCAGTGCCA
GCCGCATCTGGCTCCGGAGCGTTACTAATGATGGTGTCTTTGAGCAAATT
TGCTTGCGCCTGCAGACCGTTGGACTTCAAATGGCCGACCAGCAGCTGAA
CATCGCTGCCTGCGGCATTTATGTCCCCTAACTTTATGCTCCTTCTGGTC
AGCCAGTCCAGCAAAAAGATCTCCAGGTACGCGGGATCGTAGAAGCGAAG
TGGATCTCCTGCCTGCTGGCTCTCCACCTTTTCGCGAACATCTAGGAGCA
AGCGGCCACTCTGCACCAACGACAACTCCTCACACATCCTGTAGAGGCTC
TTCAACAGAGGATGGACATGCAGCGTGATCCCAGCGATATGCGGCAAGTA
GTGCATTCGCAGCTCCTGCCAGCAGAAACCCAGTCTCCGGAGCACCTTGC
GGGCCCCAATAATGCACAGGGCCTCCACGAGATGTCTTCTCCAGGTTTCT
GGCCGGGACTTGGCGAACTTTATGAGTAGATCACTTTGCGGGAAGTCTGA
TCGTGTCATGGCCAAAAGTTTCTGCAGAATGTAGGTGGCATCCGAGTGGT
CGTCGCCATAAAGCAGAAAGCAGAGGCCCACCTTTTGGGCAAAGTTCATG
TCACGTTCCACGTAGATCAGATCGTTCTGATCGATGGTGTCTAGATGAAT
CAACAGGTTTGATCCGGCCATGGCGATCGGGAATATACAAAAATGTTTCA
CTTTAAGAAA

BS07177.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7486-PC 921 Dredd-RC 33..921 905..17 4445 100 Minus
CG7486-PB 1551 Dredd-RB 33..900 905..38 4340 100 Minus
CG7486-PA 1533 Dredd-RA 33..882 905..56 4250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dredd-RF 1689 CG7486-RF 24..917 910..17 4455 99.9 Minus
Dredd-RE 1631 CG7486-RE 24..896 910..38 4350 99.9 Minus
Dredd-RD 1613 CG7486-RD 24..878 910..56 4260 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 634525..635291 17..783 3835 100 Plus
X 23542271 X 635392..635522 780..910 640 99.2 Plus
Blast to na_te.dros performed on 2015-01-30 14:11:35 has no hits.

BS07177.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:45 Download gff for BS07177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7486-PC 31..921 17..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:53 Download gff for BS07177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7486-PC 31..921 17..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:00:32 Download gff for BS07177.3prime
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 27..917 17..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:32:33 Download gff for BS07177.3prime
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 27..917 17..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:32:33 Download gff for BS07177.3prime
Subject Subject Range Query Range Percent Splice Strand
X 634525..635289 17..781 100 <- Plus
X 635394..635518 782..907 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:00:32 Download gff for BS07177.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 528558..529322 17..781 100 <- Plus
arm_X 529427..529551 782..907 99   Plus

BS07177.5prime Sequence

848 bp (781 high quality bases) assembled on 2006-01-06

> BS07177.5prime
GAAGTTATCAGTCGACATGTCAGCGAGTGCAATTTATCGGCCATTTCCTA
AAGTGAAACATTTTTGTATATTCCCGATCGCCATGGCCGGATCAAACCTG
TTGATTCATCTAGACACCATCGATCAGAACGATCTGATCTACGTGGAACG
TGACATGAACTTTGCCCAAAAGGTGGGCCTCTGCTTTCTGCTTTATGGCG
ACGACCACTCGGATGCCACCTACATTCTGCAGAAACTTTTGGCCATGACA
CGATCAGACTTCCCGCAAAGTGATCTACTCATAAAGTTCGCCAAGTCCCG
GCCAGAAACCTGGAGAAGACATCTCGTGGAGGCCCTGTGCATTATTGGGG
CCCGCAAGGTGCTCCGGAGACTGGGTTTCTGCTGGCAGGAGCTGCGAATG
CACTACTTGCCGCATATCGCTGGGATCACGCTGCATGTCCATCCTCTGTT
GAAGAGCCTCTACAGGATGTGTGAGGAGTTGTCGTTGGTGCAGAGTGGCC
GCTTGCTCCTAGATGTTCGCGAAAAGGTGGAGAGCCAGCAGGCAGGAGAT
CCACTTCGCTTCTACGATCCCGCGTACCTGGAGATCTTTTTGCTGGACTG
GCTGACCAGAAGGAGCATAAAGTTAGGGGACATAAATGCCGCAGGCAGCG
ATGTTCAGCTGCTGGTCGGCCATTTGAAGTCCAACGGTCTGCAGGCGCAA
GCAAATTTGCTCAAAGACACCATCATTAGTAACGCTCCGGAGCCAGATGC
GGCTGGCACTGCTGCGATGGCAGTCAAGCAAGAGATTGAATCGGATAACC
AGCAGTCGTACTGTTCCACACAAATAGATGCTCTTAAGTTGACCCGGG

BS07177.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7486-PB 1551 Dredd-RB 1..832 17..848 4160 100 Plus
CG7486-PC 921 Dredd-RC 1..832 17..848 4160 100 Plus
CG7486-PA 1533 Dredd-RA 1..832 17..848 4160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dredd-RF 1689 CG7486-RF 1..828 21..848 4140 100 Plus
Dredd-RE 1631 CG7486-RE 1..828 21..848 4140 100 Plus
Dredd-RD 1613 CG7486-RD 1..828 21..848 4140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 634614..635291 848..171 3390 100 Minus
X 23542271 X 635392..635549 174..17 790 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:24:42 has no hits.

BS07177.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:46 Download gff for BS07177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7486-PB 1..832 17..848 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:54 Download gff for BS07177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7486-PA 1..832 17..848 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:27 Download gff for BS07177.5prime
Subject Subject Range Query Range Percent Splice Strand
Dredd-RD 1..828 21..848 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:18 Download gff for BS07177.5prime
Subject Subject Range Query Range Percent Splice Strand
Dredd-RD 1..828 21..848 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:18 Download gff for BS07177.5prime
Subject Subject Range Query Range Percent Splice Strand
X 634614..635289 173..848 100 <- Minus
X 635394..635553 12..172 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:27 Download gff for BS07177.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 528647..529322 173..848 100 <- Minus
arm_X 529427..529586 12..172 98   Minus

BS07177.complete Sequence

953 bp (953 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635754

> BS07177.complete
GAAGTTATCAGTCGACATGTCAGCGAGTGCAATTTATCGGCCATTTCCTA
AAGTGAAACATTTTTGTATATTCCCGATCGCCATGGCCGGATCAAACCTG
TTGATTCATCTAGACACCATCGATCAGAACGATCTGATCTACGTGGAACG
TGACATGAACTTTGCCCAAAAGGTGGGCCTCTGCTTTCTGCTTTATGGCG
ACGACCACTCGGATGCCACCTACATTCTGCAGAAACTTTTGGCCATGACA
CGATCAGACTTCCCGCAAAGTGATCTACTCATAAAGTTCGCCAAGTCCCG
GCCAGAAACCTGGAGAAGACATCTCGTGGAGGCCCTGTGCATTATTGGGG
CCCGCAAGGTGCTCCGGAGACTGGGTTTCTGCTGGCAGGAGCTGCGAATG
CACTACTTGCCGCATATCGCTGGGATCACGCTGCATGTCCATCCTCTGTT
GAAGAGCCTCTACAGGATGTGTGAGGAGTTGTCGTTGGTGCAGAGTGGCC
GCTTGCTCCTAGATGTTCGCGAAAAGGTGGAGAGCCAGCAGGCAGGAGAT
CCACTTCGCTTCTACGATCCCGCGTACCTGGAGATCTTTTTGCTGGACTG
GCTGACCAGAAGGAGCATAAAGTTAGGGGACATAAATGCCGCAGGCAGCG
ATGTTCAGCTGCTGGTCGGCCATTTGAAGTCCAACGGTCTGCAGGCGCAA
GCAAATTTGCTCAAAGACACCATCATTAGTAACGCTCCGGAGCCAGATGC
GGCTGGCACTGCTGCGATGGCAGTCAAGCAAGAGATTGAATCGGATAACC
AGCAGTCGTACTGTTCCACACAAATAGATGCTCTTAAGTTGACCCGGGAG
AACGCAGGAATCGCCTTGATTATCAACCAGCAGAAGTTTCACCGGAATGT
TAGCAGGGATAATATGGTTTCATCTCTGCAATATTGAAAGCTTTCTAGAC
CAT

BS07177.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dredd-RF 855 CG7486-PF 1..855 83..937 4275 100 Plus
Dredd-RE 1485 CG7486-PE 1..834 83..916 4170 100 Plus
Dredd-RD 1467 CG7486-PD 1..816 83..898 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dredd-RF 1689 CG7486-RF 1..917 21..937 4585 100 Plus
Dredd-RE 1631 CG7486-RE 1..896 21..916 4480 100 Plus
Dredd-RD 1613 CG7486-RD 1..878 21..898 4390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 634525..635291 937..171 3835 100 Minus
X 23542271 X 635392..635549 174..17 790 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:10:45 has no hits.

BS07177.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:26 Download gff for BS07177.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..855 83..937 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:54 Download gff for BS07177.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 175..1099 12..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:11 Download gff for BS07177.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..916 21..936 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:26 Download gff for BS07177.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 175..1099 12..937 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:41 Download gff for BS07177.complete
Subject Subject Range Query Range Percent Splice Strand
Dredd-RF 1..916 21..936 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:41 Download gff for BS07177.complete
Subject Subject Range Query Range Percent Splice Strand
X 634526..635289 173..936 100 <- Minus
X 635394..635549 17..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:11 Download gff for BS07177.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 528559..529322 173..936 100 <- Minus
arm_X 529427..529582 17..172 100   Minus

BS07177.pep Sequence

Translation from 16 to 936

> BS07177.pep
MSASAIYRPFPKVKHFCIFPIAMAGSNLLIHLDTIDQNDLIYVERDMNFA
QKVGLCFLLYGDDHSDATYILQKLLAMTRSDFPQSDLLIKFAKSRPETWR
RHLVEALCIIGARKVLRRLGFCWQELRMHYLPHIAGITLHVHPLLKSLYR
MCEELSLVQSGRLLLDVREKVESQQAGDPLRFYDPAYLEIFLLDWLTRRS
IKLGDINAAGSDVQLLVGHLKSNGLQAQANLLKDTIISNAPEPDAAGTAA
MAVKQEIESDNQQSYCSTQIDALKLTRENAGIALIINQQKFHRNVSRDNM
VSSLQY*

BS07177.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dredd-PF 284 CG7486-PF 1..284 23..306 1456 100 Plus
Dredd-PE 494 CG7486-PE 1..278 23..300 1428 100 Plus
Dredd-PD 488 CG7486-PD 1..272 23..294 1398 100 Plus
Dredd-PG 440 CG7486-PG 1..224 77..300 1149 100 Plus