Clone BS07178 Report

Search the DGRC for BS07178

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG4525-RA
Protein status:BS07178.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07178.3prime Sequence

857 bp (846 high quality bases) assembled on 2006-01-06

> BS07178.3prime
ATGGTCTAGAAAGCTTTTATTTAAAATGATTGATGTGCTTTCGAATCGTT
TTGATCATGGCCTCAGCCTGCGAGTTCGACGAGTCGCGTAGGATGCCGAT
GACCTCTGAGATTCCTCCACCAGGACGACCTCTTTGTGCCTTGGTGCACA
AGGCGAACAAAACTCCGGCGCAGGCGCCCCTTTTGCCCTCCCAATTCTCC
GGACTGGGATCTAGTTTTTCGAGCATATCAAATGCTTTGGCTGCCACCCA
AAATTCGGCACACTTGTAACACTCATTGGCAATCAGTTGCAACAGGATAA
ATGCCTCCGCATTCGTATCCCTGGTGATGAATACATTCCAAGCTAGCTCA
GGGTGACCGCAATGTATGTGGCACTTGGCCAGGATCATGCAGTAGGTATG
CTGGTTCTTGATATCCATGTCGGAGATCTGCATCAGCAACTCCTCCGCCT
CCTTGTAATATCCTGTGGCGCATTTCGCCTGGGCAAAGTTATAGTTGAAA
ACATCGTCGTTCACGAAGTAACTGCGAATGGAGTTCATGTAGACCAGCAC
CTCCTCGAATTGCTCGTAGAGGAAAAAGGCGGAGGCCATACTCTGACGAC
CCGGTATAGTGTCACACTCTGTTGCCGAACTGCCCACCAAATGCAGGTTT
TGCTGGGCCGTCTTGATGTGCTCTTTCGATCCCAATTGCTGGCCCAGGGC
GGCATGGACCACTCCTTTGAGTATGTACTCATGCGGCGAAGTTGGCTGTA
GTTCCTTCATCAGAGCATGAGCTTCCTGAACATCGCCCTGCTTCAGATAG
TATATAGCCAGATTCAAGCGAGCCTCAGGAATGATATTCAATAATCCTGG
CAGGACT

BS07178.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525-PA 1713 CG4525-RA 873..1713 857..17 4205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525-RA 1881 CG4525-RA 953..1794 857..16 4210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15776833..15777294 677..216 2310 100 Minus
3R 32079331 3R 15777354..15777553 215..16 1000 100 Minus
3R 32079331 3R 15776591..15776771 857..677 905 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:59:24 has no hits.

BS07178.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:47 Download gff for BS07178.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-PA 873..1713 17..857 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:55 Download gff for BS07178.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-PA 873..1713 17..857 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:00:35 Download gff for BS07178.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 994..1835 16..857 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:26 Download gff for BS07178.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 953..1794 16..857 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:26 Download gff for BS07178.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15777354..15777553 16..215 100   Minus
3R 15776591..15776771 677..857 100 -> Minus
3R 15776834..15777294 216..676 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:00:35 Download gff for BS07178.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11602313..11602493 677..857 100 -> Minus
arm_3R 11602556..11603016 216..676 100 -> Minus
arm_3R 11603076..11603275 16..215 100   Minus

BS07178.5prime Sequence

918 bp (871 high quality bases) assembled on 2006-01-06

> BS07178.5prime
GAAGTTATCAGTCGACATGATACTTTCGCGCGGAAAAACCGACTCGGCGA
GCTCGAGAAATGCCAGCGGAGGTCCTGGCAGTGGACTCGGCGTTGGAAGG
CAGGCAAGGAAGACTCCGGCACCGGCCTCCCTAGAGGATTTCATCATCAG
GCGGGACTACACGGGAGCCCGGGCTTTTCTGGAGTTCGCCAACGACGACG
AGGACGAGGAGGAGGGTGCTCATGGATCCAAGCAGAGTCAGGTGGATCAG
TGGATTGCCTTTTGCAATTTCCATTTGGGTGACTACCAACAGGCGCTGGC
CCAATACAAGGCCATACAGCAGGGTTCGTCAACTCCTGATGGGAAATTGG
ATCTCAACCTGGCCGTGTGTATGTTCTACTTGGGCTTGTACGAGGAGGCC
CAACAACTGATGGCCAATGCGGCTGACAATCCGCTGAAGCAGCGACTCCT
CTTCCACTTGGCCCACAAGCTGGGCAACGAGGAGGAGTGGAGCCAGCTGC
AGGAGGAGCTGCAGGATTCCTCGAGCTTGGAACAGCAGCTCAGCCTGGCT
TCGATGCACTACATGCGGGCCCATTACCAGGAGGCCATCGATGTGTACAA
ACGGGTGCTGGTGGACAACAAGGAATACCAGGCCATCAATGTCTATTTGG
CCTTGTGTTTTTACAAGCTCGACTATTACGACATGTCCCAGGAGGTCTTG
GATGTGTATCTCAGTCAACATGGCGATAGTACCATAGCTATTAACCTAAA
GGCTTGCAATCGATTTCGTTTGTTCAACGGTCGTGTGGCCGAGCAGGAAA
TCAAGAATATAGCCGATAATGGCACCTTCGGAGCGGATCTTCTGCGTCAC
AACTTGGTCGTTTTTCGGAACGGTGAAGGGGCATTGAGAGTCCTGCCAGG
ATAATTGAATATCATTCC

BS07178.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525-PA 1713 CG4525-RA 1..902 17..918 4485 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525-RA 1881 CG4525-RA 81..982 17..918 4495 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15775885..15776620 183..918 3665 99.9 Plus
3R 32079331 3R 15774559..15774724 19..184 830 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:41:46 has no hits.

BS07178.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:48 Download gff for BS07178.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:57 Download gff for BS07178.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:37:52 Download gff for BS07178.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 122..1023 17..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:14:22 Download gff for BS07178.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 81..982 17..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:14:22 Download gff for BS07178.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15774554..15774724 11..184 98 -> Plus
3R 15775887..15776620 185..918 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:37:52 Download gff for BS07178.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11600276..11600446 11..184 98 -> Plus
arm_3R 11601609..11602342 185..918 99   Plus

BS07178.complete Sequence

1745 bp (1745 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635755

> BS07178.complete
GAAGTTATCAGTCGACATGATACTTTCGCGCGGAAAAACCGACTCGGCGA
GCTCGAGAAATGCCAGCGGAGGTCCTGGCAGTGGACTCGGCGTTGGAAGG
CAGGCAAGGAAGACTCCGGCACCGGCCTCCCTAGAGGATTTCATCATCAG
GCGGGACTACACGGGAGCCCGGGCTTTTCTGGAGTTCGCCAACGACGACG
AGGACGAGGAGGAGGGTGCTCATGGATCCAAGCAGAGTCAGGTGGATCAG
TGGATTGCCTTTTGCAATTTCCATTTGGGTGACTACCAACAGGCGCTGGC
CCAATACAAGGCCATACAGCAGGGTTCGTCAACTCCTGATGGGAAATTGG
ATCTCAACCTGGCCGTGTGTATGTTCTACTTGGGCTTGTACGAGGAGGCC
CAACAACTGATGGCCAATGCGGCTGACAATCCGCTGAAGCAGCGACTCCT
CTTCCACTTGGCCCACAAGCTGGGCAACGAGGAGGAGTGGAGCCAGCTGC
AGGAGGAGCTGCAGGATTCCTCGAGCTTGGAACAGCAGCTCAGCCTGGCT
TCGATGCACTACATGCGGGCCCATTACCAGGAGGCCATCGATGTGTACAA
ACGGGTGCTGGTGGACAACAAGGAATACCAGGCCATCAATGTCTATTTGG
CCTTGTGTTTTTACAAGCTCGACTATTACGACATGTCCCAGGAGGTCTTG
GATGTGTATCTCAGTCAACATGGCGATAGTACCATAGCTATTAACCTAAA
GGCTTGCAATCGATTTCGTTTGTTCAACGGTCGTGTGGCCGAGCAGGAAA
TCAAGAATATAGCCGATAATGGCACCTTCGGAGCGGATCTTCTGCGTCAC
AACTTGGTCGTTTTTCGGAACGGTGAAGGGGCATTGAGAGTCCTGCCAGG
ATTATTGAATATCATTCCTGAGGCTCGCTTGAATCTGGCTATATACTATC
TGAAGCAGGGCGATGTTCAGGAAGCTCATGCTCTGATGAAGGAACTACAG
CCAACTTCGCCGCATGAGTACATACTCAAAGGAGTGGTCCATGCCGCCCT
GGGCCAGCAATTGGGATCGAAAGAGCACATCAAGACGGCCCAGCAAAACC
TGCATTTGGTGGGCAGTTCGGCAACAGAGTGTGACACTATACCGGGTCGT
CAGAGTATGGCCTCCGCCTTTTTCCTCTACGAGCAATTCGAGGAGGTGCT
GGTCTACATGAACTCCATTCGCAGTTACTTCGTGAACGACGATGTTTTCA
ACTATAACTTTGCCCAGGCGAAATGCGCCACAGGATATTACAAGGAGGCG
GAGGAGTTGCTGATGCAGATCTCCGACATGGATATCAAGAACCAGCATAC
CTACTGCATGATCCTGGCCAAGTGCCACATACATTGCGGTCACCCTGAGC
TAGCTTGGAATGTATTCATCACCAGGGATACGAATGCGGAGGCATTTATC
CTGTTGCAACTGATTGCCAATGAGTGTTACAAGTGTGCCGAATTTTGGGT
GGCAGCCAAAGCATTTGATATGCTCGAAAAACTAGATCCCAGTCCGGAGA
ATTGGGAGGGCAAAAGGGGCGCCTGCGCCGGAGTTTTGTTCGCCTTGTGC
ACCAAGGCACAAAGAGGTCGTCCTGGTGGAGGAATCTCAGAGGTCATCGG
CATCCTACGCGACTCGTCGAACTCGCAGGCTGAGGCCATGATCAAAACGA
TTCGAAAGCACATCAATCATTTTAAATAAAAGCTTTCTAGACCAT

BS07178.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525-RA 1713 CG4525-PA 1..1713 17..1729 8565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525-RA 1881 CG4525-RA 81..1794 17..1730 8570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15775885..15776771 183..1069 4435 100 Plus
3R 32079331 3R 15776833..15777294 1069..1530 2310 100 Plus
3R 32079331 3R 15777354..15777553 1531..1730 1000 100 Plus
3R 32079331 3R 15774559..15774724 19..184 830 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:44:32 has no hits.

BS07178.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:27 Download gff for BS07178.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 1..1713 17..1729 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:55 Download gff for BS07178.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 122..1835 17..1730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:35:15 Download gff for BS07178.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 122..1832 17..1727 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:27 Download gff for BS07178.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 122..1835 17..1730 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:08 Download gff for BS07178.complete
Subject Subject Range Query Range Percent Splice Strand
CG4525-RA 81..1791 17..1727 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:08 Download gff for BS07178.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15777354..15777550 1531..1727 100   Plus
3R 15774558..15774724 17..184 99 -> Plus
3R 15775887..15776771 185..1069 100 -> Plus
3R 15776834..15777294 1070..1530 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:35:15 Download gff for BS07178.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11603076..11603272 1531..1727 100   Plus
arm_3R 11600280..11600446 17..184 99 -> Plus
arm_3R 11601609..11602493 185..1069 100 -> Plus
arm_3R 11602556..11603016 1070..1530 100 -> Plus

BS07178.pep Sequence

Translation from 16 to 1728

> BS07178.pep
MILSRGKTDSASSRNASGGPGSGLGVGRQARKTPAPASLEDFIIRRDYTG
ARAFLEFANDDEDEEEGAHGSKQSQVDQWIAFCNFHLGDYQQALAQYKAI
QQGSSTPDGKLDLNLAVCMFYLGLYEEAQQLMANAADNPLKQRLLFHLAH
KLGNEEEWSQLQEELQDSSSLEQQLSLASMHYMRAHYQEAIDVYKRVLVD
NKEYQAINVYLALCFYKLDYYDMSQEVLDVYLSQHGDSTIAINLKACNRF
RLFNGRVAEQEIKNIADNGTFGADLLRHNLVVFRNGEGALRVLPGLLNII
PEARLNLAIYYLKQGDVQEAHALMKELQPTSPHEYILKGVVHAALGQQLG
SKEHIKTAQQNLHLVGSSATECDTIPGRQSMASAFFLYEQFEEVLVYMNS
IRSYFVNDDVFNYNFAQAKCATGYYKEAEELLMQISDMDIKNQHTYCMIL
AKCHIHCGHPELAWNVFITRDTNAEAFILLQLIANECYKCAEFWVAAKAF
DMLEKLDPSPENWEGKRGACAGVLFALCTKAQRGRPGGGISEVIGILRDS
SNSQAEAMIKTIRKHINHFK*

BS07178.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4525-PA 570 CG4525-PA 1..570 1..570 2979 100 Plus