Clone Sequence Records
BS07178.3prime Sequence
857 bp (846 high quality bases) assembled on 2006-01-06
> BS07178.3prime
ATGGTCTAGAAAGCTTTTATTTAAAATGATTGATGTGCTTTCGAATCGTT
TTGATCATGGCCTCAGCCTGCGAGTTCGACGAGTCGCGTAGGATGCCGAT
GACCTCTGAGATTCCTCCACCAGGACGACCTCTTTGTGCCTTGGTGCACA
AGGCGAACAAAACTCCGGCGCAGGCGCCCCTTTTGCCCTCCCAATTCTCC
GGACTGGGATCTAGTTTTTCGAGCATATCAAATGCTTTGGCTGCCACCCA
AAATTCGGCACACTTGTAACACTCATTGGCAATCAGTTGCAACAGGATAA
ATGCCTCCGCATTCGTATCCCTGGTGATGAATACATTCCAAGCTAGCTCA
GGGTGACCGCAATGTATGTGGCACTTGGCCAGGATCATGCAGTAGGTATG
CTGGTTCTTGATATCCATGTCGGAGATCTGCATCAGCAACTCCTCCGCCT
CCTTGTAATATCCTGTGGCGCATTTCGCCTGGGCAAAGTTATAGTTGAAA
ACATCGTCGTTCACGAAGTAACTGCGAATGGAGTTCATGTAGACCAGCAC
CTCCTCGAATTGCTCGTAGAGGAAAAAGGCGGAGGCCATACTCTGACGAC
CCGGTATAGTGTCACACTCTGTTGCCGAACTGCCCACCAAATGCAGGTTT
TGCTGGGCCGTCTTGATGTGCTCTTTCGATCCCAATTGCTGGCCCAGGGC
GGCATGGACCACTCCTTTGAGTATGTACTCATGCGGCGAAGTTGGCTGTA
GTTCCTTCATCAGAGCATGAGCTTCCTGAACATCGCCCTGCTTCAGATAG
TATATAGCCAGATTCAAGCGAGCCTCAGGAATGATATTCAATAATCCTGG
CAGGACT
BS07178.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4525-PA | 1713 | CG4525-RA | 873..1713 | 857..17 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4525-RA | 1881 | CG4525-RA | 953..1794 | 857..16 | 4210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:59:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15776833..15777294 | 677..216 | 2310 | 100 | Minus |
3R | 32079331 | 3R | 15777354..15777553 | 215..16 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 15776591..15776771 | 857..677 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:59:24 has no hits.
BS07178.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:47 Download gff for
BS07178.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4525-PA | 873..1713 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:55 Download gff for
BS07178.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4525-PA | 873..1713 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:00:35 Download gff for
BS07178.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4525-RA | 994..1835 | 16..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:26 Download gff for
BS07178.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4525-RA | 953..1794 | 16..857 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:26 Download gff for
BS07178.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15777354..15777553 | 16..215 | 100 | | Minus |
3R | 15776591..15776771 | 677..857 | 100 | -> | Minus |
3R | 15776834..15777294 | 216..676 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:00:35 Download gff for
BS07178.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11602313..11602493 | 677..857 | 100 | -> | Minus |
arm_3R | 11602556..11603016 | 216..676 | 100 | -> | Minus |
arm_3R | 11603076..11603275 | 16..215 | 100 | | Minus |
BS07178.5prime Sequence
918 bp (871 high quality bases) assembled on 2006-01-06
> BS07178.5prime
GAAGTTATCAGTCGACATGATACTTTCGCGCGGAAAAACCGACTCGGCGA
GCTCGAGAAATGCCAGCGGAGGTCCTGGCAGTGGACTCGGCGTTGGAAGG
CAGGCAAGGAAGACTCCGGCACCGGCCTCCCTAGAGGATTTCATCATCAG
GCGGGACTACACGGGAGCCCGGGCTTTTCTGGAGTTCGCCAACGACGACG
AGGACGAGGAGGAGGGTGCTCATGGATCCAAGCAGAGTCAGGTGGATCAG
TGGATTGCCTTTTGCAATTTCCATTTGGGTGACTACCAACAGGCGCTGGC
CCAATACAAGGCCATACAGCAGGGTTCGTCAACTCCTGATGGGAAATTGG
ATCTCAACCTGGCCGTGTGTATGTTCTACTTGGGCTTGTACGAGGAGGCC
CAACAACTGATGGCCAATGCGGCTGACAATCCGCTGAAGCAGCGACTCCT
CTTCCACTTGGCCCACAAGCTGGGCAACGAGGAGGAGTGGAGCCAGCTGC
AGGAGGAGCTGCAGGATTCCTCGAGCTTGGAACAGCAGCTCAGCCTGGCT
TCGATGCACTACATGCGGGCCCATTACCAGGAGGCCATCGATGTGTACAA
ACGGGTGCTGGTGGACAACAAGGAATACCAGGCCATCAATGTCTATTTGG
CCTTGTGTTTTTACAAGCTCGACTATTACGACATGTCCCAGGAGGTCTTG
GATGTGTATCTCAGTCAACATGGCGATAGTACCATAGCTATTAACCTAAA
GGCTTGCAATCGATTTCGTTTGTTCAACGGTCGTGTGGCCGAGCAGGAAA
TCAAGAATATAGCCGATAATGGCACCTTCGGAGCGGATCTTCTGCGTCAC
AACTTGGTCGTTTTTCGGAACGGTGAAGGGGCATTGAGAGTCCTGCCAGG
ATAATTGAATATCATTCC
BS07178.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4525-PA | 1713 | CG4525-RA | 1..902 | 17..918 | 4485 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4525-RA | 1881 | CG4525-RA | 81..982 | 17..918 | 4495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15775885..15776620 | 183..918 | 3665 | 99.9 | Plus |
3R | 32079331 | 3R | 15774559..15774724 | 19..184 | 830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:41:46 has no hits.
BS07178.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:48 Download gff for
BS07178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4525-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:57 Download gff for
BS07178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4525-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:37:52 Download gff for
BS07178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4525-RA | 122..1023 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:14:22 Download gff for
BS07178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4525-RA | 81..982 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:14:22 Download gff for
BS07178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15774554..15774724 | 11..184 | 98 | -> | Plus |
3R | 15775887..15776620 | 185..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:37:52 Download gff for
BS07178.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11600276..11600446 | 11..184 | 98 | -> | Plus |
arm_3R | 11601609..11602342 | 185..918 | 99 | | Plus |
BS07178.complete Sequence
1745 bp (1745 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635755
> BS07178.complete
GAAGTTATCAGTCGACATGATACTTTCGCGCGGAAAAACCGACTCGGCGA
GCTCGAGAAATGCCAGCGGAGGTCCTGGCAGTGGACTCGGCGTTGGAAGG
CAGGCAAGGAAGACTCCGGCACCGGCCTCCCTAGAGGATTTCATCATCAG
GCGGGACTACACGGGAGCCCGGGCTTTTCTGGAGTTCGCCAACGACGACG
AGGACGAGGAGGAGGGTGCTCATGGATCCAAGCAGAGTCAGGTGGATCAG
TGGATTGCCTTTTGCAATTTCCATTTGGGTGACTACCAACAGGCGCTGGC
CCAATACAAGGCCATACAGCAGGGTTCGTCAACTCCTGATGGGAAATTGG
ATCTCAACCTGGCCGTGTGTATGTTCTACTTGGGCTTGTACGAGGAGGCC
CAACAACTGATGGCCAATGCGGCTGACAATCCGCTGAAGCAGCGACTCCT
CTTCCACTTGGCCCACAAGCTGGGCAACGAGGAGGAGTGGAGCCAGCTGC
AGGAGGAGCTGCAGGATTCCTCGAGCTTGGAACAGCAGCTCAGCCTGGCT
TCGATGCACTACATGCGGGCCCATTACCAGGAGGCCATCGATGTGTACAA
ACGGGTGCTGGTGGACAACAAGGAATACCAGGCCATCAATGTCTATTTGG
CCTTGTGTTTTTACAAGCTCGACTATTACGACATGTCCCAGGAGGTCTTG
GATGTGTATCTCAGTCAACATGGCGATAGTACCATAGCTATTAACCTAAA
GGCTTGCAATCGATTTCGTTTGTTCAACGGTCGTGTGGCCGAGCAGGAAA
TCAAGAATATAGCCGATAATGGCACCTTCGGAGCGGATCTTCTGCGTCAC
AACTTGGTCGTTTTTCGGAACGGTGAAGGGGCATTGAGAGTCCTGCCAGG
ATTATTGAATATCATTCCTGAGGCTCGCTTGAATCTGGCTATATACTATC
TGAAGCAGGGCGATGTTCAGGAAGCTCATGCTCTGATGAAGGAACTACAG
CCAACTTCGCCGCATGAGTACATACTCAAAGGAGTGGTCCATGCCGCCCT
GGGCCAGCAATTGGGATCGAAAGAGCACATCAAGACGGCCCAGCAAAACC
TGCATTTGGTGGGCAGTTCGGCAACAGAGTGTGACACTATACCGGGTCGT
CAGAGTATGGCCTCCGCCTTTTTCCTCTACGAGCAATTCGAGGAGGTGCT
GGTCTACATGAACTCCATTCGCAGTTACTTCGTGAACGACGATGTTTTCA
ACTATAACTTTGCCCAGGCGAAATGCGCCACAGGATATTACAAGGAGGCG
GAGGAGTTGCTGATGCAGATCTCCGACATGGATATCAAGAACCAGCATAC
CTACTGCATGATCCTGGCCAAGTGCCACATACATTGCGGTCACCCTGAGC
TAGCTTGGAATGTATTCATCACCAGGGATACGAATGCGGAGGCATTTATC
CTGTTGCAACTGATTGCCAATGAGTGTTACAAGTGTGCCGAATTTTGGGT
GGCAGCCAAAGCATTTGATATGCTCGAAAAACTAGATCCCAGTCCGGAGA
ATTGGGAGGGCAAAAGGGGCGCCTGCGCCGGAGTTTTGTTCGCCTTGTGC
ACCAAGGCACAAAGAGGTCGTCCTGGTGGAGGAATCTCAGAGGTCATCGG
CATCCTACGCGACTCGTCGAACTCGCAGGCTGAGGCCATGATCAAAACGA
TTCGAAAGCACATCAATCATTTTAAATAAAAGCTTTCTAGACCAT
BS07178.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4525-RA | 1713 | CG4525-PA | 1..1713 | 17..1729 | 8565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4525-RA | 1881 | CG4525-RA | 81..1794 | 17..1730 | 8570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:44:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15775885..15776771 | 183..1069 | 4435 | 100 | Plus |
3R | 32079331 | 3R | 15776833..15777294 | 1069..1530 | 2310 | 100 | Plus |
3R | 32079331 | 3R | 15777354..15777553 | 1531..1730 | 1000 | 100 | Plus |
3R | 32079331 | 3R | 15774559..15774724 | 19..184 | 830 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:44:32 has no hits.
BS07178.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:27 Download gff for
BS07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4525-RA | 1..1713 | 17..1729 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:55 Download gff for
BS07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4525-RA | 122..1835 | 17..1730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:35:15 Download gff for
BS07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4525-RA | 122..1832 | 17..1727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:27 Download gff for
BS07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4525-RA | 122..1835 | 17..1730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:08 Download gff for
BS07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4525-RA | 81..1791 | 17..1727 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:08 Download gff for
BS07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15777354..15777550 | 1531..1727 | 100 | | Plus |
3R | 15774558..15774724 | 17..184 | 99 | -> | Plus |
3R | 15775887..15776771 | 185..1069 | 100 | -> | Plus |
3R | 15776834..15777294 | 1070..1530 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:35:15 Download gff for
BS07178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11603076..11603272 | 1531..1727 | 100 | | Plus |
arm_3R | 11600280..11600446 | 17..184 | 99 | -> | Plus |
arm_3R | 11601609..11602493 | 185..1069 | 100 | -> | Plus |
arm_3R | 11602556..11603016 | 1070..1530 | 100 | -> | Plus |
BS07178.pep Sequence
Translation from 16 to 1728
> BS07178.pep
MILSRGKTDSASSRNASGGPGSGLGVGRQARKTPAPASLEDFIIRRDYTG
ARAFLEFANDDEDEEEGAHGSKQSQVDQWIAFCNFHLGDYQQALAQYKAI
QQGSSTPDGKLDLNLAVCMFYLGLYEEAQQLMANAADNPLKQRLLFHLAH
KLGNEEEWSQLQEELQDSSSLEQQLSLASMHYMRAHYQEAIDVYKRVLVD
NKEYQAINVYLALCFYKLDYYDMSQEVLDVYLSQHGDSTIAINLKACNRF
RLFNGRVAEQEIKNIADNGTFGADLLRHNLVVFRNGEGALRVLPGLLNII
PEARLNLAIYYLKQGDVQEAHALMKELQPTSPHEYILKGVVHAALGQQLG
SKEHIKTAQQNLHLVGSSATECDTIPGRQSMASAFFLYEQFEEVLVYMNS
IRSYFVNDDVFNYNFAQAKCATGYYKEAEELLMQISDMDIKNQHTYCMIL
AKCHIHCGHPELAWNVFITRDTNAEAFILLQLIANECYKCAEFWVAAKAF
DMLEKLDPSPENWEGKRGACAGVLFALCTKAQRGRPGGGISEVIGILRDS
SNSQAEAMIKTIRKHINHFK*
BS07178.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4525-PA | 570 | CG4525-PA | 1..570 | 1..570 | 2979 | 100 | Plus |