Clone BS07179 Report

Search the DGRC for BS07179

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG18266-RA
Protein status:BS07179.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07179.3prime Sequence

881 bp (789 high quality bases) assembled on 2006-01-06

> BS07179.3prime
ATGGTCTAGAAAGCTTCTAACGACTGCGCCCCGAATCCTGCGGATCGATA
TTGGACACCCATTGCACGGGATTGATGTAGATGTTGGATATGGTACCGCG
CAGCGTGTCAAAGCCCTGATTGAGGGGAACCGGCTTGGCCCGCTTGTCCA
CCTGTTTCATCCAGTTCTGCCAGGCGCCTTGGCGGCGCTGACGGCGTTCC
TCCTCCAGTTTCTGCTTGTTGCACTGCAGTCGGATCAGGCGTTGTTTTTC
CTGTTGCTGCTGCTCCCGCTTGGCTTGCTCCCACTTCTGCAGACGGTTCT
TTGTGTTCTCGGGAGACACCTTCCTTGTAGGGGCGGTGCTAGAGCTGGAA
ACCGATCCCAAACTGGAGCTAGAGGTCGAGGATTTCTTTTGCTTTTGCCG
CTGCTGCTGCTGCTGCTCCTCCTTGCGACGACACCACTCCTGGAAGTGCT
CCTGGGCATATTTCTGTCGCAGTGCTGCCTCCGCCTCCCGCTTTTCGCGC
TCCTGTTTGGCAGCCAGCAGATTCTTCTGCTTCTCGGCGGCCTTTCGCGC
CTTCCAGTCCTCGAAGGCCTGCGGGCCAGGGCGTTCCTTATGCTCCTCCA
GCTGCTTGTAGCACGTGGACGAGTCAGAGACGACGCTGGCCAGGCTCAGA
GGGGGCATACCGGTGCATCCATCGGTGGACTGCAGAGCACCGCGGTACAT
GTCCGACCAGCTGCAGGTGGACATCGAGGATGCGTCATGGTTTTGATTGT
TGCCCGAGCTACTCAGGCTGTATGTCCGACTGGAAATCTGGCCCTGGTTA
GTCTCCTTTACGGAGGCCTGCTTGTAGAAAGTCCTGCCGCTCAGCGCATC
CAGATTGTTATCCTTTGCAAAGGTCCTGGTG

BS07179.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-PA 1461 CG18266-RA 613..1461 865..17 4220 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-RA 1804 CG18266-RA 703..1569 881..15 4275 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5597535..5598401 881..15 4275 99.5 Minus
Blast to na_te.dros performed 2015-02-11 16:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1059..1171 297..179 157 63 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6859 300..179 143 59.8 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3295..3351 264..208 132 70.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6821 289..196 130 64.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2535 417..187 122 56.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6765..6890 307..187 122 59.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6826 264..179 121 65.6 Minus
Dbuz\BuT6 387 Dbuz\BuT6 BUT6 387bp 153..221 366..433 117 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6816..6925 300..185 114 60.3 Minus

BS07179.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:49 Download gff for BS07179.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-PA 597..1461 17..881 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:58 Download gff for BS07179.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-PA 597..1461 17..881 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:42:03 Download gff for BS07179.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 703..1574 8..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:25 Download gff for BS07179.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 703..1574 8..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:25 Download gff for BS07179.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5597535..5598406 8..881 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:42:03 Download gff for BS07179.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5597535..5598406 8..881 99   Minus

BS07179.5prime Sequence

923 bp (871 high quality bases) assembled on 2006-01-06

> BS07179.5prime
GAAGTTATCAGTCGACATGGCCTTTGTAGCGCGTCGGAGTAGCGATGGCT
CGGTGGTGGATCGTCAGCAGGTGTCTGGTCGGGAAAAAGTACGTCCAGCT
TCCCAGTCGGACATTAGTGATGAGGATTCGGAGTCGCTGCTGGGCTATAC
AAACCACACCTATGGGGCTCCCACAGTGAGGTATGTTGGCCAGGGTGAAG
ATCGTGAAGCGGTGGAACCTCAGCTAGATTATGAGGATTTTGGGGATTCT
CTGGGGGATCATGCCGACAATTCGGAAAGCGAGACGGATTCCATTTTGAG
TTTCTGCAAGGAACTGGATGAGGAGGAGGCCAACGATGCATTGCTAAATG
GCAGAATGAGCTTCACAGACGAGAAGGCGAAAGTTGAGGATAAAGCGAAT
GCAGATGATGTGTTTCACCGGGTCATGAACAAAGGCGATGAGGCGGCTGC
CACGGACACGGAGACCGTGATGAACTTTGATCACGATGTGCAGAGCCTTA
GCTCCTTAGGCAGCTGCACGCCAACGGTGACGCAACGCGGTGAGGATGTC
GACAATTTGGACAATATCAGCGGCAGGACATTTTTCAAGGAGGAAAAATC
GCACAGCATTAACACCAGGACCTTTTGCAAGGATAACAATCTGGATGCGC
TGAGCGGCAGGACCTTCTACAAGCAGGCCTCCGTAAAGGAGACTAACCAG
GGCCAGATTTCCAGTCGGACATACAGCCTGAGTAGCTCGGGCAACAATCA
AAACCATGACGCATCCTCGATGTCCACCTGCAGCTGGTCGGACATGTACC
GCGGTGCTCTGCAGTCCACCGATGGATGCACCGGTATGCCCCCTCTGAGC
CTGGCCAGCGTCGTCTCTGACTCGTCCACGTGCTACAAGCAGCTGGAAGA
GCATAAGGAACGCCCTGGCCCGC

BS07179.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-PA 1461 CG18266-RA 1..907 17..923 4510 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-RA 1804 CG18266-RA 107..1013 17..923 4520 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5596939..5597845 17..923 4520 99.9 Plus
Blast to na_te.dros performed on 2015-02-09 22:09:12 has no hits.

BS07179.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:50 Download gff for BS07179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:59 Download gff for BS07179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:27 Download gff for BS07179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 105..1013 14..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:41:18 Download gff for BS07179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 105..1013 14..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:41:18 Download gff for BS07179.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5596937..5597845 14..923 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:27 Download gff for BS07179.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5596937..5597845 14..923 99   Plus

BS07179.complete Sequence

1493 bp (1493 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635756

> BS07179.complete
GAAGTTATCAGTCGACATGGCCTTTGTAGCGCGTCGGAGTAGCGATGGCT
CGGTGGTGGATCGTCAGCAGGTGTCTGGTCGGGAAAAAGTACGTCCAGCT
TCCCAGTCGGACATTAGTGATGAGGATTCGGAGTCGCTGCTGGGCTATAC
AAACCACACCTATGGGGCTCCCACAGTGAGGTATGTTGGCCAGGGTGAAG
ATCGTGAAGCGGTGGAACCTCAGCTAGATTATGAGGATTTTGGGGATTCT
CTGGGGGATCATGCCGACAATTCGGAAAGCGAGACGGATTCCATTTTGAG
TTTCTGCAAGGAACTGGATGAGGAGGAGGCCAACGATGCATTGCTAAATG
GCAGAATGAGCTTCACAGACGAGAAGGCGAAAGTTGAGGATAAAGCGAAT
GCAGATGATGTGTTTCACCGGGTCATGAACAAAGGCGATGAGGCGGCTGC
CACGGACACGGAGACCGTGATGAACTTTGATCACGATGTGCAGAGCCTTA
GCTCCTTAGGCAGCTGCACGCCAACGGTGACGCAACGCGGTGAGGATGTC
GACAATTTGGACAATATCAGCGGCAGGACATTTTTCAAGGAGGAAAAATC
GCACAGCATTAACACCAGGACCTTTTGCAAGGATAACAATCTGGATGCGC
TGAGCGGCAGGACCTTCTACAAGCAGGCCTCCGTAAAGGAGACTAACCAG
GGCCAGATTTCCAGTCGGACATACAGCCTGAGTAGCTCGGGCAACAATCA
AAACCATGACGCATCCTCGATGTCCACCTGCAGCTGGTCGGACATGTACC
GCGGTGCTCTGCAGTCCACCGATGGATGCACCGGTATGCCCCCTCTGAGC
CTGGCCAGCGTCGTCTCTGACTCGTCCACGTGCTACAAGCAGCTGGAGGA
GCATAAGGAACGCCCTGGCCCGCAGGCCTTCGAGGACTGGAAGGCGCGAA
AGGCCGCCGAGAAGCAGAAGAATCTGCTGGCTGCCAAACAGGAGCGCGAA
AAGCGGGAGGCGGAGGCAGCACTGCGACAGAAATATGCCCAGGAGCACTT
CCAGGAGTGGTGTCGTCGCAAGGAGGAGCAGCAGCAGCAGCAGCGGCAAA
AGCAAAAGAAATCCTCGACCTCTAGCTCCAGTTTGGGATCGGTTTCCAGC
TCTAGCACCGCCCCTACAAGGAAGGTGTCTCCCGAGAACACAAAGAACCG
TCTGCAGAAGTGGGAGCAAGCCAAGCGGGAGCAGCAGCAACAGGAAAAAC
AACGCCTGATCCGACTGCAGTGCAACAAGCAGAAACTGGAGGAGGAACGC
CGTCAGCGCCGCCAAGGCGCCTGGCAGAACTGGATGAAACAGGTGGACAA
GCGGGCCAAGCCGGTTCCCCTCAATCAGGGCTTTGACACGCTGCGCGGTA
CCATATCCAACATCTACATCAATCCCGTGCAATGGGTGTCCAATATCGAT
CCGCAGGATTCGGGGCGCAGTCGTTAGAAGCTTTCTAGACCAT

BS07179.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-RA 1461 CG18266-PA 1..1461 17..1477 7305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-RA 1804 CG18266-RA 107..1569 17..1479 7315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5596939..5598401 17..1479 7315 100 Plus
Blast to na_te.dros performed 2014-11-27 14:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1059..1171 1197..1315 157 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6859 1194..1315 143 59.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3295..3351 1230..1286 132 70.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2535 1077..1307 122 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6816..6925 1194..1309 114 60.3 Plus

BS07179.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:32 Download gff for BS07179.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 1..1461 17..1477 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:59 Download gff for BS07179.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 105..1574 14..1486 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:02 Download gff for BS07179.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 107..1567 17..1477 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:32 Download gff for BS07179.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 105..1574 14..1486 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:33 Download gff for BS07179.complete
Subject Subject Range Query Range Percent Splice Strand
CG18266-RA 107..1567 17..1477 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:33 Download gff for BS07179.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5596939..5598399 17..1477 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:02 Download gff for BS07179.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5596939..5598399 17..1477 100   Plus

BS07179.pep Sequence

Translation from 16 to 1476

> BS07179.pep
MAFVARRSSDGSVVDRQQVSGREKVRPASQSDISDEDSESLLGYTNHTYG
APTVRYVGQGEDREAVEPQLDYEDFGDSLGDHADNSESETDSILSFCKEL
DEEEANDALLNGRMSFTDEKAKVEDKANADDVFHRVMNKGDEAAATDTET
VMNFDHDVQSLSSLGSCTPTVTQRGEDVDNLDNISGRTFFKEEKSHSINT
RTFCKDNNLDALSGRTFYKQASVKETNQGQISSRTYSLSSSGNNQNHDAS
SMSTCSWSDMYRGALQSTDGCTGMPPLSLASVVSDSSTCYKQLEEHKERP
GPQAFEDWKARKAAEKQKNLLAAKQEREKREAEAALRQKYAQEHFQEWCR
RKEEQQQQQRQKQKKSSTSSSSLGSVSSSSTAPTRKVSPENTKNRLQKWE
QAKREQQQQEKQRLIRLQCNKQKLEEERRQRRQGAWQNWMKQVDKRAKPV
PLNQGFDTLRGTISNIYINPVQWVSNIDPQDSGRSR*

BS07179.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG18266-PA 486 CG18266-PA 1..486 1..486 2523 100 Plus
CG14011-PC 388 CG14011-PC 139..388 221..475 333 31.2 Plus
CG14011-PB 388 CG14011-PB 139..388 221..475 333 31.2 Plus
CG14011-PA 388 CG14011-PA 139..388 221..475 333 31.2 Plus
CG7251-PB 321 CG7251-PB 47..316 230..477 311 31.7 Plus