Clone Sequence Records
BS07179.3prime Sequence
881 bp (789 high quality bases) assembled on 2006-01-06
> BS07179.3prime
ATGGTCTAGAAAGCTTCTAACGACTGCGCCCCGAATCCTGCGGATCGATA
TTGGACACCCATTGCACGGGATTGATGTAGATGTTGGATATGGTACCGCG
CAGCGTGTCAAAGCCCTGATTGAGGGGAACCGGCTTGGCCCGCTTGTCCA
CCTGTTTCATCCAGTTCTGCCAGGCGCCTTGGCGGCGCTGACGGCGTTCC
TCCTCCAGTTTCTGCTTGTTGCACTGCAGTCGGATCAGGCGTTGTTTTTC
CTGTTGCTGCTGCTCCCGCTTGGCTTGCTCCCACTTCTGCAGACGGTTCT
TTGTGTTCTCGGGAGACACCTTCCTTGTAGGGGCGGTGCTAGAGCTGGAA
ACCGATCCCAAACTGGAGCTAGAGGTCGAGGATTTCTTTTGCTTTTGCCG
CTGCTGCTGCTGCTGCTCCTCCTTGCGACGACACCACTCCTGGAAGTGCT
CCTGGGCATATTTCTGTCGCAGTGCTGCCTCCGCCTCCCGCTTTTCGCGC
TCCTGTTTGGCAGCCAGCAGATTCTTCTGCTTCTCGGCGGCCTTTCGCGC
CTTCCAGTCCTCGAAGGCCTGCGGGCCAGGGCGTTCCTTATGCTCCTCCA
GCTGCTTGTAGCACGTGGACGAGTCAGAGACGACGCTGGCCAGGCTCAGA
GGGGGCATACCGGTGCATCCATCGGTGGACTGCAGAGCACCGCGGTACAT
GTCCGACCAGCTGCAGGTGGACATCGAGGATGCGTCATGGTTTTGATTGT
TGCCCGAGCTACTCAGGCTGTATGTCCGACTGGAAATCTGGCCCTGGTTA
GTCTCCTTTACGGAGGCCTGCTTGTAGAAAGTCCTGCCGCTCAGCGCATC
CAGATTGTTATCCTTTGCAAAGGTCCTGGTG
BS07179.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18266-PA | 1461 | CG18266-RA | 613..1461 | 865..17 | 4220 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18266-RA | 1804 | CG18266-RA | 703..1569 | 881..15 | 4275 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5597535..5598401 | 881..15 | 4275 | 99.5 | Minus |
Blast to na_te.dros performed 2015-02-11 16:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1059..1171 | 297..179 | 157 | 63 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6859 | 300..179 | 143 | 59.8 | Minus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3295..3351 | 264..208 | 132 | 70.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6821 | 289..196 | 130 | 64.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2535 | 417..187 | 122 | 56.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6890 | 307..187 | 122 | 59.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6826 | 264..179 | 121 | 65.6 | Minus |
Dbuz\BuT6 | 387 | Dbuz\BuT6 BUT6 387bp | 153..221 | 366..433 | 117 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6816..6925 | 300..185 | 114 | 60.3 | Minus |
BS07179.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:49 Download gff for
BS07179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-PA | 597..1461 | 17..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:58 Download gff for
BS07179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-PA | 597..1461 | 17..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:42:03 Download gff for
BS07179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 703..1574 | 8..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:25 Download gff for
BS07179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 703..1574 | 8..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:25 Download gff for
BS07179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5597535..5598406 | 8..881 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:42:03 Download gff for
BS07179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5597535..5598406 | 8..881 | 99 | | Minus |
BS07179.5prime Sequence
923 bp (871 high quality bases) assembled on 2006-01-06
> BS07179.5prime
GAAGTTATCAGTCGACATGGCCTTTGTAGCGCGTCGGAGTAGCGATGGCT
CGGTGGTGGATCGTCAGCAGGTGTCTGGTCGGGAAAAAGTACGTCCAGCT
TCCCAGTCGGACATTAGTGATGAGGATTCGGAGTCGCTGCTGGGCTATAC
AAACCACACCTATGGGGCTCCCACAGTGAGGTATGTTGGCCAGGGTGAAG
ATCGTGAAGCGGTGGAACCTCAGCTAGATTATGAGGATTTTGGGGATTCT
CTGGGGGATCATGCCGACAATTCGGAAAGCGAGACGGATTCCATTTTGAG
TTTCTGCAAGGAACTGGATGAGGAGGAGGCCAACGATGCATTGCTAAATG
GCAGAATGAGCTTCACAGACGAGAAGGCGAAAGTTGAGGATAAAGCGAAT
GCAGATGATGTGTTTCACCGGGTCATGAACAAAGGCGATGAGGCGGCTGC
CACGGACACGGAGACCGTGATGAACTTTGATCACGATGTGCAGAGCCTTA
GCTCCTTAGGCAGCTGCACGCCAACGGTGACGCAACGCGGTGAGGATGTC
GACAATTTGGACAATATCAGCGGCAGGACATTTTTCAAGGAGGAAAAATC
GCACAGCATTAACACCAGGACCTTTTGCAAGGATAACAATCTGGATGCGC
TGAGCGGCAGGACCTTCTACAAGCAGGCCTCCGTAAAGGAGACTAACCAG
GGCCAGATTTCCAGTCGGACATACAGCCTGAGTAGCTCGGGCAACAATCA
AAACCATGACGCATCCTCGATGTCCACCTGCAGCTGGTCGGACATGTACC
GCGGTGCTCTGCAGTCCACCGATGGATGCACCGGTATGCCCCCTCTGAGC
CTGGCCAGCGTCGTCTCTGACTCGTCCACGTGCTACAAGCAGCTGGAAGA
GCATAAGGAACGCCCTGGCCCGC
BS07179.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18266-PA | 1461 | CG18266-RA | 1..907 | 17..923 | 4510 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18266-RA | 1804 | CG18266-RA | 107..1013 | 17..923 | 4520 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:09:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5596939..5597845 | 17..923 | 4520 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:09:12 has no hits.
BS07179.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:50 Download gff for
BS07179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:51:59 Download gff for
BS07179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:27 Download gff for
BS07179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 105..1013 | 14..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:41:18 Download gff for
BS07179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 105..1013 | 14..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:41:18 Download gff for
BS07179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5596937..5597845 | 14..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:27 Download gff for
BS07179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5596937..5597845 | 14..923 | 99 | | Plus |
BS07179.complete Sequence
1493 bp (1493 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635756
> BS07179.complete
GAAGTTATCAGTCGACATGGCCTTTGTAGCGCGTCGGAGTAGCGATGGCT
CGGTGGTGGATCGTCAGCAGGTGTCTGGTCGGGAAAAAGTACGTCCAGCT
TCCCAGTCGGACATTAGTGATGAGGATTCGGAGTCGCTGCTGGGCTATAC
AAACCACACCTATGGGGCTCCCACAGTGAGGTATGTTGGCCAGGGTGAAG
ATCGTGAAGCGGTGGAACCTCAGCTAGATTATGAGGATTTTGGGGATTCT
CTGGGGGATCATGCCGACAATTCGGAAAGCGAGACGGATTCCATTTTGAG
TTTCTGCAAGGAACTGGATGAGGAGGAGGCCAACGATGCATTGCTAAATG
GCAGAATGAGCTTCACAGACGAGAAGGCGAAAGTTGAGGATAAAGCGAAT
GCAGATGATGTGTTTCACCGGGTCATGAACAAAGGCGATGAGGCGGCTGC
CACGGACACGGAGACCGTGATGAACTTTGATCACGATGTGCAGAGCCTTA
GCTCCTTAGGCAGCTGCACGCCAACGGTGACGCAACGCGGTGAGGATGTC
GACAATTTGGACAATATCAGCGGCAGGACATTTTTCAAGGAGGAAAAATC
GCACAGCATTAACACCAGGACCTTTTGCAAGGATAACAATCTGGATGCGC
TGAGCGGCAGGACCTTCTACAAGCAGGCCTCCGTAAAGGAGACTAACCAG
GGCCAGATTTCCAGTCGGACATACAGCCTGAGTAGCTCGGGCAACAATCA
AAACCATGACGCATCCTCGATGTCCACCTGCAGCTGGTCGGACATGTACC
GCGGTGCTCTGCAGTCCACCGATGGATGCACCGGTATGCCCCCTCTGAGC
CTGGCCAGCGTCGTCTCTGACTCGTCCACGTGCTACAAGCAGCTGGAGGA
GCATAAGGAACGCCCTGGCCCGCAGGCCTTCGAGGACTGGAAGGCGCGAA
AGGCCGCCGAGAAGCAGAAGAATCTGCTGGCTGCCAAACAGGAGCGCGAA
AAGCGGGAGGCGGAGGCAGCACTGCGACAGAAATATGCCCAGGAGCACTT
CCAGGAGTGGTGTCGTCGCAAGGAGGAGCAGCAGCAGCAGCAGCGGCAAA
AGCAAAAGAAATCCTCGACCTCTAGCTCCAGTTTGGGATCGGTTTCCAGC
TCTAGCACCGCCCCTACAAGGAAGGTGTCTCCCGAGAACACAAAGAACCG
TCTGCAGAAGTGGGAGCAAGCCAAGCGGGAGCAGCAGCAACAGGAAAAAC
AACGCCTGATCCGACTGCAGTGCAACAAGCAGAAACTGGAGGAGGAACGC
CGTCAGCGCCGCCAAGGCGCCTGGCAGAACTGGATGAAACAGGTGGACAA
GCGGGCCAAGCCGGTTCCCCTCAATCAGGGCTTTGACACGCTGCGCGGTA
CCATATCCAACATCTACATCAATCCCGTGCAATGGGTGTCCAATATCGAT
CCGCAGGATTCGGGGCGCAGTCGTTAGAAGCTTTCTAGACCAT
BS07179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18266-RA | 1461 | CG18266-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18266-RA | 1804 | CG18266-RA | 107..1569 | 17..1479 | 7315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5596939..5598401 | 17..1479 | 7315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1059..1171 | 1197..1315 | 157 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6859 | 1194..1315 | 143 | 59.8 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3295..3351 | 1230..1286 | 132 | 70.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2535 | 1077..1307 | 122 | 56.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6816..6925 | 1194..1309 | 114 | 60.3 | Plus |
BS07179.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:32 Download gff for
BS07179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 1..1461 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:59 Download gff for
BS07179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 105..1574 | 14..1486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:02 Download gff for
BS07179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 107..1567 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:32 Download gff for
BS07179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 105..1574 | 14..1486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:33 Download gff for
BS07179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18266-RA | 107..1567 | 17..1477 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:33 Download gff for
BS07179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5596939..5598399 | 17..1477 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:02 Download gff for
BS07179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5596939..5598399 | 17..1477 | 100 | | Plus |
BS07179.pep Sequence
Translation from 16 to 1476
> BS07179.pep
MAFVARRSSDGSVVDRQQVSGREKVRPASQSDISDEDSESLLGYTNHTYG
APTVRYVGQGEDREAVEPQLDYEDFGDSLGDHADNSESETDSILSFCKEL
DEEEANDALLNGRMSFTDEKAKVEDKANADDVFHRVMNKGDEAAATDTET
VMNFDHDVQSLSSLGSCTPTVTQRGEDVDNLDNISGRTFFKEEKSHSINT
RTFCKDNNLDALSGRTFYKQASVKETNQGQISSRTYSLSSSGNNQNHDAS
SMSTCSWSDMYRGALQSTDGCTGMPPLSLASVVSDSSTCYKQLEEHKERP
GPQAFEDWKARKAAEKQKNLLAAKQEREKREAEAALRQKYAQEHFQEWCR
RKEEQQQQQRQKQKKSSTSSSSLGSVSSSSTAPTRKVSPENTKNRLQKWE
QAKREQQQQEKQRLIRLQCNKQKLEEERRQRRQGAWQNWMKQVDKRAKPV
PLNQGFDTLRGTISNIYINPVQWVSNIDPQDSGRSR*
BS07179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18266-PA | 486 | CG18266-PA | 1..486 | 1..486 | 2523 | 100 | Plus |
CG14011-PC | 388 | CG14011-PC | 139..388 | 221..475 | 333 | 31.2 | Plus |
CG14011-PB | 388 | CG14011-PB | 139..388 | 221..475 | 333 | 31.2 | Plus |
CG14011-PA | 388 | CG14011-PA | 139..388 | 221..475 | 333 | 31.2 | Plus |
CG7251-PB | 321 | CG7251-PB | 47..316 | 230..477 | 311 | 31.7 | Plus |