Clone BS07182 Report

Search the DGRC for BS07182

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG8503-RA
Protein status:BS07182.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07182.3prime Sequence

847 bp (747 high quality bases) assembled on 2006-01-06

> BS07182.3prime
ATGGTCTAGAAAGCTTCTAGGACATGACCATGCGAAGGGCATCGCGGTTG
ATCTTGGCCTGCTTAAGCACGTGACCCTCGATGAAGATGTCCGACTCGTA
TTTCAGATAGTTGACGCACTTGTCCACATAAAACAGGGACTCCTCCAGTC
GATCCTTGGGCGACAGGCTCGTTTCAAGGGCTACACGACGAGTCTGTTCG
GCAATTGCCGAGTGCAGTTCGAAGCAAAGCGTGCCGAGCGTGCGAACTTC
GCACGGCGTCAGTTTCTCGTACAACTCAACAAGTTCCCTAGCGAAATTGA
GCTTTAGCAGCAGTCTGTCATCCGGGATCACCATTAGCTCCTTCTGATCC
TTGGCCAGCAGCTGAACGAGCAGGATTTTAATCTCACTCATGTGAAAATG
CTGTGGCGGCAGCCACTTTTCGTAATGCTTGAGGTATTTTAATCCATTTT
CAGCGATTTTCTCCATGCTCTGAATGTCTTTGCCAGCCCGTTCCAAAATG
CGTTCCACATAGTGTTTCTGGACCTGCTTGTGGCACTCGCGACAGCGCCA
ACTGCCGTTCCATTCGTCCGCCTTGGTGGGCAGCATCAATCCGCCGCACT
GGCGATCCTCGCACTTAATAGCGCTGTAGTTGGTGTCCAACTCGGTGACA
TCCACACATCTCTCGCAGGCACACTTGAACAGCTTTGTCTGCATCAGGTG
GCGCTGGCGATCGGCGGTGCCCCACATGGCGTCCGAGTAGCAGATGCTCA
GGTGGGCGTTCTTCTTGATCTCGCGCGGTGCCCAGAGGATGCAGTGTCCG
TTCTTGTTGAAGCTCTTGGCCAGATTGGGCAGGCAGGAGTTCTCCGT

BS07182.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8503-PA 1542 CG8503-RA 712..1542 847..17 4155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8503-RA 1774 CG8503-RA 872..1702 847..17 4155 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14244969..14245270 847..546 1510 100 Minus
2R 25286936 2R 14245759..14245994 252..17 1180 100 Minus
2R 25286936 2R 14245500..14245685 437..252 930 100 Minus
2R 25286936 2R 14245335..14245443 546..438 545 100 Minus
Blast to na_te.dros performed 2015-02-12 03:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 1482..1586 697..594 117 58.1 Minus

BS07182.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:55 Download gff for BS07182.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-PA 712..1542 17..847 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:06 Download gff for BS07182.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-PA 712..1542 17..847 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:56:11 Download gff for BS07182.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 872..1704 13..847 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:19 Download gff for BS07182.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 872..1704 13..847 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:19 Download gff for BS07182.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14245500..14245684 253..437 100 -> Minus
2R 14245759..14245996 13..252 99   Minus
2R 14244969..14245270 546..847 100 -> Minus
2R 14245336..14245443 438..545 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:56:11 Download gff for BS07182.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10132474..10132775 546..847 100 -> Minus
arm_2R 10132841..10132948 438..545 100 -> Minus
arm_2R 10133005..10133189 253..437 100 -> Minus
arm_2R 10133264..10133501 13..252 99   Minus

BS07182.5prime Sequence

938 bp (872 high quality bases) assembled on 2006-01-06

> BS07182.5prime
GAAGTTATCAGTCGACATGAATCCCTGCCATGTGTGCGAGGAGCCGACGA
AGAACAAGTGCTCCAACTGTAACCAGGTCTCCTACTGCAGTGTCCAGCAC
CAGAAGCAGGACTGGAAAGTGCACAAGCCAAGCTGTCATCCATTCAAGAT
CGCCCACAATGAGCAGCTGGGCCGGCATCTGGTGGCCACCCGCACCATTA
AACCATACGAGATAGTCCTGAAGGAGGCGCCTCTGGTCCGGGGACCAGCA
CAGATCTCCGCACCCGTTTGCCTGGGCTGTTTGAACGGCATCGAGGCGGA
GGATCACATCGAGTGCGAGCAGTGCGGTTGGCCGCTGTGCGGACCGGAGT
GCAAGTCCCTGGATGAGCACAAGGCGGAGTGCGGTCTGACCAAGGATCGG
GGTCAGAAGGTTAATGTGCAGGAGTTCGGTGGACCACATCCCCTGTACAC
GTGTTTGAGCACCGTAAGGTGCCTGCTGATTGGCGAAACAAGTACGGAGA
AGGCCAGCAAGTTCCAGGACCTGGAGTCACTGGAGTCCACCAGAAGGGGG
TCCAACCAATGGAAGGCGGATCTGGTCAGCATCGGGCAGTTTATTCCAAA
GTTCTTTAAAACACAGAAGTTCACCGAGGAGGAGATTATGAAAGCAGTTG
GTGCTCTGCAAATAAATGGACACGAGGTGCCCACCACTGATCCATCTCAT
GTAGCGGTCTTTTATACCGCCTCCTTTACGGAGAACTCCTGCCTGCCCAA
TCTGGCCAAGAGCTTCAACAAGAACGGACACTGCATCCTCTGGGCACCGC
GCGAGATCAAGAAGAACGCCCACCTGAGCATCTGCTACTCGGACGCCATG
TGGGGCACCGCCGATCGCCAGCGCCACCTGATGCAGACAAAGCTGTTCAA
GTGTGCCTGCGAGAGATGTGTGGATGTCACCGAGTTGG

BS07182.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8503-PA 1542 CG8503-RA 1..922 17..938 4610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8503-RA 1774 CG8503-RA 160..1082 16..938 4615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14244126..14244581 147..602 2280 100 Plus
2R 25286936 2R 14244842..14245179 601..938 1690 100 Plus
2R 25286936 2R 14243937..14244069 16..148 665 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:32:16 has no hits.

BS07182.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:57 Download gff for BS07182.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-PA 1..922 17..938 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:08 Download gff for BS07182.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-PA 1..922 17..938 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:29 Download gff for BS07182.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 160..1082 16..938 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:47:05 Download gff for BS07182.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 160..1082 16..938 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:47:05 Download gff for BS07182.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14243937..14244069 16..148 100 -> Plus
2R 14244128..14244579 149..600 100 -> Plus
2R 14244842..14245179 601..938 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:29 Download gff for BS07182.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10131442..10131574 16..148 100 -> Plus
arm_2R 10131633..10132084 149..600 100 -> Plus
arm_2R 10132347..10132684 601..938 100   Plus

BS07182.complete Sequence

1574 bp (1574 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635757

> BS07182.complete
GAAGTTATCAGTCGACATGAATCCCTGCCATGTGTGCGAGGAGCCGACGA
AGAACAAGTGCTCCAACTGTAACCAGGTCTCCTACTGCAGTGTCCAGCAC
CAGAAGCAGGACTGGAAAGTGCACAAGCCAAGCTGTCATCCATTCAAGAT
CGCCCACAATGAGCAGCTGGGCCGGCATCTGGTGGCCACCCGCACCATTA
AACCATACGAGATAGTCCTGAAGGAGGCGCCTCTGGTCCGGGGACCAGCA
CAGATCTCCGCACCCGTTTGCCTGGGCTGTTTGAACGGCATCGAGGCGGA
GGATCACATCGAGTGCGAGCAGTGCGGTTGGCCGCTGTGCGGACCGGAGT
GCAAGTCCCTGGATGAGCACAAGGCGGAGTGCGGTCTGACCAAGGATCGG
GGTCAGAAGGTTAATGTGCAGGAGTTCGGTGGACCACATCCCCTGTACAC
GTGTTTGAGCACCGTAAGGTGCCTGCTGATTGGCGAAACAAGTACGGAGA
AGGCCAGCAAGTTCCAGGACCTGGAGTCACTGGAGTCCACCAGAAGGGGG
TCCAACCAATGGAAGGCGGATCTGGTCAGCATCGGGCAGTTTATTCCAAA
GTTCTTTAAAACACAGAAGTTCACCGAGGAGGAGATTATGAAAGCAGTTG
GTGCTCTGCAAATAAATGGACACGAGGTGCCCACCACTGATCCATCTCAT
GTAGCGGTCTTTTATACCGCCTCCTTTACGGAGAACTCCTGCCTGCCCAA
TCTGGCCAAGAGCTTCAACAAGAACGGACACTGCATCCTCTGGGCACCGC
GCGAGATCAAGAAGAACGCCCACCTGAGCATCTGCTACTCGGACGCCATG
TGGGGCACCGCCGATCGCCAGCGCCACCTGATGCAGACAAAGCTGTTCAA
GTGTGCCTGCGAGAGATGTGTGGATGTCACCGAGTTGGACACCAACTACA
GCGCTATTAAGTGCGAGGATCGCCAGTGCGGCGGATTGATGCTGCCCACC
AAGGCGGACGAATGGAACGGCAGTTGGCGCTGTCGCGAGTGCCACAAGCA
GGTCCAGAAACACTATGTGGAACGCATTTTGGAACGGGCTGGCAAAGACA
TTCAGAGCATGGAGAAAATCGCTGAAAATGGATTAAAATACCTCAAGCAT
TACGAAAAGTGGCTGCCGCCACAGCATTTTCACATGAGTGAGATTAAAAT
CCTGCTCGTTCAGCTGCTGGCCAAGGATCAGAAGGAGCTAATGGTGATCC
CGGATGACAGACTGCTGCTAAAGCTCAATTTCGCTAGGGAACTTGTTGAG
TTGTACGAGAAACTGACGCCGTGCGAAGTTCGCACGCTCGGCACGCTTTG
CTTCGAACTGCACTCGGCAATTGCCGAACAGACTCGTCGTGTAGCCCTTG
AAACGAGCCTGTCGCCCAAGGATCGACTGGAGGAGTCCCTGTTTTATGTG
GACAAGTGCGTCAACTATCTGAAATACGAGTCGGACATCTTCATCGAGGG
TCACGTGCTTAAGCAGGCCAAGATCAACCGCGATGCCCTTCGCATGGTCA
TGTCCTAGAAGCTTTCTAGACCAT

BS07182.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8503-RA 1542 CG8503-PA 1..1542 17..1558 7710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8503-RA 1774 CG8503-RA 160..1702 16..1558 7715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14244126..14244581 147..602 2280 100 Plus
2R 25286936 2R 14244842..14245270 601..1029 2145 100 Plus
2R 25286936 2R 14245759..14245994 1323..1558 1180 100 Plus
2R 25286936 2R 14245500..14245685 1138..1323 930 100 Plus
2R 25286936 2R 14243937..14244069 16..148 665 100 Plus
2R 25286936 2R 14245335..14245443 1029..1137 545 100 Plus
Blast to na_te.dros performed 2014-11-27 14:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 1482..1586 878..981 117 58.1 Plus

BS07182.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:33 Download gff for BS07182.complete
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 1..1542 17..1558 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:01 Download gff for BS07182.complete
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 251..1795 16..1562 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:04 Download gff for BS07182.complete
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 161..1702 17..1558 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:34 Download gff for BS07182.complete
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 251..1795 16..1562 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:17 Download gff for BS07182.complete
Subject Subject Range Query Range Percent Splice Strand
CG8503-RA 161..1702 17..1558 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:17 Download gff for BS07182.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14245759..14245994 1323..1558 100   Plus
2R 14243938..14244069 17..148 100 -> Plus
2R 14244128..14244579 149..600 100 -> Plus
2R 14244842..14245270 601..1029 100 -> Plus
2R 14245336..14245443 1030..1137 100 -> Plus
2R 14245500..14245684 1138..1322 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:04 Download gff for BS07182.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10131443..10131574 17..148 100 -> Plus
arm_2R 10131633..10132084 149..600 100 -> Plus
arm_2R 10132347..10132775 601..1029 100 -> Plus
arm_2R 10132841..10132948 1030..1137 100 -> Plus
arm_2R 10133005..10133189 1138..1322 100 -> Plus
arm_2R 10133264..10133499 1323..1558 100   Plus

BS07182.pep Sequence

Translation from 16 to 1557

> BS07182.pep
MNPCHVCEEPTKNKCSNCNQVSYCSVQHQKQDWKVHKPSCHPFKIAHNEQ
LGRHLVATRTIKPYEIVLKEAPLVRGPAQISAPVCLGCLNGIEAEDHIEC
EQCGWPLCGPECKSLDEHKAECGLTKDRGQKVNVQEFGGPHPLYTCLSTV
RCLLIGETSTEKASKFQDLESLESTRRGSNQWKADLVSIGQFIPKFFKTQ
KFTEEEIMKAVGALQINGHEVPTTDPSHVAVFYTASFTENSCLPNLAKSF
NKNGHCILWAPREIKKNAHLSICYSDAMWGTADRQRHLMQTKLFKCACER
CVDVTELDTNYSAIKCEDRQCGGLMLPTKADEWNGSWRCRECHKQVQKHY
VERILERAGKDIQSMEKIAENGLKYLKHYEKWLPPQHFHMSEIKILLVQL
LAKDQKELMVIPDDRLLLKLNFARELVELYEKLTPCEVRTLGTLCFELHS
AIAEQTRRVALETSLSPKDRLEESLFYVDKCVNYLKYESDIFIEGHVLKQ
AKINRDALRMVMS*

BS07182.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8503-PA 513 CG8503-PA 1..513 1..513 2776 100 Plus
CG18136-PA 530 CG18136-PA 6..524 1..505 513 28.1 Plus
CG14590-PA 553 CG14590-PA 7..514 4..480 500 29.4 Plus
CG43129-PC 503 CG43129-PC 5..485 44..502 478 29.3 Plus
CG43129-PE 507 CG43129-PE 21..489 52..502 463 29 Plus