Clone Sequence Records
BS07182.3prime Sequence
847 bp (747 high quality bases) assembled on 2006-01-06
> BS07182.3prime
ATGGTCTAGAAAGCTTCTAGGACATGACCATGCGAAGGGCATCGCGGTTG
ATCTTGGCCTGCTTAAGCACGTGACCCTCGATGAAGATGTCCGACTCGTA
TTTCAGATAGTTGACGCACTTGTCCACATAAAACAGGGACTCCTCCAGTC
GATCCTTGGGCGACAGGCTCGTTTCAAGGGCTACACGACGAGTCTGTTCG
GCAATTGCCGAGTGCAGTTCGAAGCAAAGCGTGCCGAGCGTGCGAACTTC
GCACGGCGTCAGTTTCTCGTACAACTCAACAAGTTCCCTAGCGAAATTGA
GCTTTAGCAGCAGTCTGTCATCCGGGATCACCATTAGCTCCTTCTGATCC
TTGGCCAGCAGCTGAACGAGCAGGATTTTAATCTCACTCATGTGAAAATG
CTGTGGCGGCAGCCACTTTTCGTAATGCTTGAGGTATTTTAATCCATTTT
CAGCGATTTTCTCCATGCTCTGAATGTCTTTGCCAGCCCGTTCCAAAATG
CGTTCCACATAGTGTTTCTGGACCTGCTTGTGGCACTCGCGACAGCGCCA
ACTGCCGTTCCATTCGTCCGCCTTGGTGGGCAGCATCAATCCGCCGCACT
GGCGATCCTCGCACTTAATAGCGCTGTAGTTGGTGTCCAACTCGGTGACA
TCCACACATCTCTCGCAGGCACACTTGAACAGCTTTGTCTGCATCAGGTG
GCGCTGGCGATCGGCGGTGCCCCACATGGCGTCCGAGTAGCAGATGCTCA
GGTGGGCGTTCTTCTTGATCTCGCGCGGTGCCCAGAGGATGCAGTGTCCG
TTCTTGTTGAAGCTCTTGGCCAGATTGGGCAGGCAGGAGTTCTCCGT
BS07182.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8503-PA | 1542 | CG8503-RA | 712..1542 | 847..17 | 4155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8503-RA | 1774 | CG8503-RA | 872..1702 | 847..17 | 4155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14244969..14245270 | 847..546 | 1510 | 100 | Minus |
2R | 25286936 | 2R | 14245759..14245994 | 252..17 | 1180 | 100 | Minus |
2R | 25286936 | 2R | 14245500..14245685 | 437..252 | 930 | 100 | Minus |
2R | 25286936 | 2R | 14245335..14245443 | 546..438 | 545 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 03:54:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 1482..1586 | 697..594 | 117 | 58.1 | Minus |
BS07182.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:55 Download gff for
BS07182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-PA | 712..1542 | 17..847 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:06 Download gff for
BS07182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-PA | 712..1542 | 17..847 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:56:11 Download gff for
BS07182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 872..1704 | 13..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:19 Download gff for
BS07182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 872..1704 | 13..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:19 Download gff for
BS07182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14245500..14245684 | 253..437 | 100 | -> | Minus |
2R | 14245759..14245996 | 13..252 | 99 | | Minus |
2R | 14244969..14245270 | 546..847 | 100 | -> | Minus |
2R | 14245336..14245443 | 438..545 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:56:11 Download gff for
BS07182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10132474..10132775 | 546..847 | 100 | -> | Minus |
arm_2R | 10132841..10132948 | 438..545 | 100 | -> | Minus |
arm_2R | 10133005..10133189 | 253..437 | 100 | -> | Minus |
arm_2R | 10133264..10133501 | 13..252 | 99 | | Minus |
BS07182.5prime Sequence
938 bp (872 high quality bases) assembled on 2006-01-06
> BS07182.5prime
GAAGTTATCAGTCGACATGAATCCCTGCCATGTGTGCGAGGAGCCGACGA
AGAACAAGTGCTCCAACTGTAACCAGGTCTCCTACTGCAGTGTCCAGCAC
CAGAAGCAGGACTGGAAAGTGCACAAGCCAAGCTGTCATCCATTCAAGAT
CGCCCACAATGAGCAGCTGGGCCGGCATCTGGTGGCCACCCGCACCATTA
AACCATACGAGATAGTCCTGAAGGAGGCGCCTCTGGTCCGGGGACCAGCA
CAGATCTCCGCACCCGTTTGCCTGGGCTGTTTGAACGGCATCGAGGCGGA
GGATCACATCGAGTGCGAGCAGTGCGGTTGGCCGCTGTGCGGACCGGAGT
GCAAGTCCCTGGATGAGCACAAGGCGGAGTGCGGTCTGACCAAGGATCGG
GGTCAGAAGGTTAATGTGCAGGAGTTCGGTGGACCACATCCCCTGTACAC
GTGTTTGAGCACCGTAAGGTGCCTGCTGATTGGCGAAACAAGTACGGAGA
AGGCCAGCAAGTTCCAGGACCTGGAGTCACTGGAGTCCACCAGAAGGGGG
TCCAACCAATGGAAGGCGGATCTGGTCAGCATCGGGCAGTTTATTCCAAA
GTTCTTTAAAACACAGAAGTTCACCGAGGAGGAGATTATGAAAGCAGTTG
GTGCTCTGCAAATAAATGGACACGAGGTGCCCACCACTGATCCATCTCAT
GTAGCGGTCTTTTATACCGCCTCCTTTACGGAGAACTCCTGCCTGCCCAA
TCTGGCCAAGAGCTTCAACAAGAACGGACACTGCATCCTCTGGGCACCGC
GCGAGATCAAGAAGAACGCCCACCTGAGCATCTGCTACTCGGACGCCATG
TGGGGCACCGCCGATCGCCAGCGCCACCTGATGCAGACAAAGCTGTTCAA
GTGTGCCTGCGAGAGATGTGTGGATGTCACCGAGTTGG
BS07182.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8503-PA | 1542 | CG8503-RA | 1..922 | 17..938 | 4610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8503-RA | 1774 | CG8503-RA | 160..1082 | 16..938 | 4615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14244126..14244581 | 147..602 | 2280 | 100 | Plus |
2R | 25286936 | 2R | 14244842..14245179 | 601..938 | 1690 | 100 | Plus |
2R | 25286936 | 2R | 14243937..14244069 | 16..148 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:32:16 has no hits.
BS07182.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:04:57 Download gff for
BS07182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-PA | 1..922 | 17..938 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:08 Download gff for
BS07182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-PA | 1..922 | 17..938 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:29 Download gff for
BS07182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 160..1082 | 16..938 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:47:05 Download gff for
BS07182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 160..1082 | 16..938 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:47:05 Download gff for
BS07182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14243937..14244069 | 16..148 | 100 | -> | Plus |
2R | 14244128..14244579 | 149..600 | 100 | -> | Plus |
2R | 14244842..14245179 | 601..938 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:29 Download gff for
BS07182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10131442..10131574 | 16..148 | 100 | -> | Plus |
arm_2R | 10131633..10132084 | 149..600 | 100 | -> | Plus |
arm_2R | 10132347..10132684 | 601..938 | 100 | | Plus |
BS07182.complete Sequence
1574 bp (1574 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635757
> BS07182.complete
GAAGTTATCAGTCGACATGAATCCCTGCCATGTGTGCGAGGAGCCGACGA
AGAACAAGTGCTCCAACTGTAACCAGGTCTCCTACTGCAGTGTCCAGCAC
CAGAAGCAGGACTGGAAAGTGCACAAGCCAAGCTGTCATCCATTCAAGAT
CGCCCACAATGAGCAGCTGGGCCGGCATCTGGTGGCCACCCGCACCATTA
AACCATACGAGATAGTCCTGAAGGAGGCGCCTCTGGTCCGGGGACCAGCA
CAGATCTCCGCACCCGTTTGCCTGGGCTGTTTGAACGGCATCGAGGCGGA
GGATCACATCGAGTGCGAGCAGTGCGGTTGGCCGCTGTGCGGACCGGAGT
GCAAGTCCCTGGATGAGCACAAGGCGGAGTGCGGTCTGACCAAGGATCGG
GGTCAGAAGGTTAATGTGCAGGAGTTCGGTGGACCACATCCCCTGTACAC
GTGTTTGAGCACCGTAAGGTGCCTGCTGATTGGCGAAACAAGTACGGAGA
AGGCCAGCAAGTTCCAGGACCTGGAGTCACTGGAGTCCACCAGAAGGGGG
TCCAACCAATGGAAGGCGGATCTGGTCAGCATCGGGCAGTTTATTCCAAA
GTTCTTTAAAACACAGAAGTTCACCGAGGAGGAGATTATGAAAGCAGTTG
GTGCTCTGCAAATAAATGGACACGAGGTGCCCACCACTGATCCATCTCAT
GTAGCGGTCTTTTATACCGCCTCCTTTACGGAGAACTCCTGCCTGCCCAA
TCTGGCCAAGAGCTTCAACAAGAACGGACACTGCATCCTCTGGGCACCGC
GCGAGATCAAGAAGAACGCCCACCTGAGCATCTGCTACTCGGACGCCATG
TGGGGCACCGCCGATCGCCAGCGCCACCTGATGCAGACAAAGCTGTTCAA
GTGTGCCTGCGAGAGATGTGTGGATGTCACCGAGTTGGACACCAACTACA
GCGCTATTAAGTGCGAGGATCGCCAGTGCGGCGGATTGATGCTGCCCACC
AAGGCGGACGAATGGAACGGCAGTTGGCGCTGTCGCGAGTGCCACAAGCA
GGTCCAGAAACACTATGTGGAACGCATTTTGGAACGGGCTGGCAAAGACA
TTCAGAGCATGGAGAAAATCGCTGAAAATGGATTAAAATACCTCAAGCAT
TACGAAAAGTGGCTGCCGCCACAGCATTTTCACATGAGTGAGATTAAAAT
CCTGCTCGTTCAGCTGCTGGCCAAGGATCAGAAGGAGCTAATGGTGATCC
CGGATGACAGACTGCTGCTAAAGCTCAATTTCGCTAGGGAACTTGTTGAG
TTGTACGAGAAACTGACGCCGTGCGAAGTTCGCACGCTCGGCACGCTTTG
CTTCGAACTGCACTCGGCAATTGCCGAACAGACTCGTCGTGTAGCCCTTG
AAACGAGCCTGTCGCCCAAGGATCGACTGGAGGAGTCCCTGTTTTATGTG
GACAAGTGCGTCAACTATCTGAAATACGAGTCGGACATCTTCATCGAGGG
TCACGTGCTTAAGCAGGCCAAGATCAACCGCGATGCCCTTCGCATGGTCA
TGTCCTAGAAGCTTTCTAGACCAT
BS07182.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8503-RA | 1542 | CG8503-PA | 1..1542 | 17..1558 | 7710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8503-RA | 1774 | CG8503-RA | 160..1702 | 16..1558 | 7715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14244126..14244581 | 147..602 | 2280 | 100 | Plus |
2R | 25286936 | 2R | 14244842..14245270 | 601..1029 | 2145 | 100 | Plus |
2R | 25286936 | 2R | 14245759..14245994 | 1323..1558 | 1180 | 100 | Plus |
2R | 25286936 | 2R | 14245500..14245685 | 1138..1323 | 930 | 100 | Plus |
2R | 25286936 | 2R | 14243937..14244069 | 16..148 | 665 | 100 | Plus |
2R | 25286936 | 2R | 14245335..14245443 | 1029..1137 | 545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 1482..1586 | 878..981 | 117 | 58.1 | Plus |
BS07182.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:33 Download gff for
BS07182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 1..1542 | 17..1558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:01 Download gff for
BS07182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 251..1795 | 16..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:04 Download gff for
BS07182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 161..1702 | 17..1558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:34 Download gff for
BS07182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 251..1795 | 16..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:17 Download gff for
BS07182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8503-RA | 161..1702 | 17..1558 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:17 Download gff for
BS07182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14245759..14245994 | 1323..1558 | 100 | | Plus |
2R | 14243938..14244069 | 17..148 | 100 | -> | Plus |
2R | 14244128..14244579 | 149..600 | 100 | -> | Plus |
2R | 14244842..14245270 | 601..1029 | 100 | -> | Plus |
2R | 14245336..14245443 | 1030..1137 | 100 | -> | Plus |
2R | 14245500..14245684 | 1138..1322 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:04 Download gff for
BS07182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10131443..10131574 | 17..148 | 100 | -> | Plus |
arm_2R | 10131633..10132084 | 149..600 | 100 | -> | Plus |
arm_2R | 10132347..10132775 | 601..1029 | 100 | -> | Plus |
arm_2R | 10132841..10132948 | 1030..1137 | 100 | -> | Plus |
arm_2R | 10133005..10133189 | 1138..1322 | 100 | -> | Plus |
arm_2R | 10133264..10133499 | 1323..1558 | 100 | | Plus |
BS07182.pep Sequence
Translation from 16 to 1557
> BS07182.pep
MNPCHVCEEPTKNKCSNCNQVSYCSVQHQKQDWKVHKPSCHPFKIAHNEQ
LGRHLVATRTIKPYEIVLKEAPLVRGPAQISAPVCLGCLNGIEAEDHIEC
EQCGWPLCGPECKSLDEHKAECGLTKDRGQKVNVQEFGGPHPLYTCLSTV
RCLLIGETSTEKASKFQDLESLESTRRGSNQWKADLVSIGQFIPKFFKTQ
KFTEEEIMKAVGALQINGHEVPTTDPSHVAVFYTASFTENSCLPNLAKSF
NKNGHCILWAPREIKKNAHLSICYSDAMWGTADRQRHLMQTKLFKCACER
CVDVTELDTNYSAIKCEDRQCGGLMLPTKADEWNGSWRCRECHKQVQKHY
VERILERAGKDIQSMEKIAENGLKYLKHYEKWLPPQHFHMSEIKILLVQL
LAKDQKELMVIPDDRLLLKLNFARELVELYEKLTPCEVRTLGTLCFELHS
AIAEQTRRVALETSLSPKDRLEESLFYVDKCVNYLKYESDIFIEGHVLKQ
AKINRDALRMVMS*
BS07182.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8503-PA | 513 | CG8503-PA | 1..513 | 1..513 | 2776 | 100 | Plus |
CG18136-PA | 530 | CG18136-PA | 6..524 | 1..505 | 513 | 28.1 | Plus |
CG14590-PA | 553 | CG14590-PA | 7..514 | 4..480 | 500 | 29.4 | Plus |
CG43129-PC | 503 | CG43129-PC | 5..485 | 44..502 | 478 | 29.3 | Plus |
CG43129-PE | 507 | CG43129-PE | 21..489 | 52..502 | 463 | 29 | Plus |