Clone Sequence Records
BS07184.3prime Sequence
884 bp (803 high quality bases) assembled on 2006-01-06
> BS07184.3prime
ATGGTCTAGAAAGCTTTTAATCCTCGACAGCACACATGACGGAGTAGACG
CACTCTTCCTTGTTAATCAAGTGGCAGGTCTTGTTGACCAGGGACATCAG
CTGGTTGACGTCGGTGGCCCAGTTGTTCAGGATGTCGGAGGCGCTCTTTT
TTTGGGTGAAGTAAATGATGCCGGCGGGACGGTCGATCTTTACGCGGATG
GTGTCGGTGTTGGCCAGTTTAGAAAGATACTCCTCGCAGCGGCTGGTGGG
CAGGTTCAGCAGCTCACTCATGCGCGCCAAATGCAGGCGGGAGTAATACA
TGGCAATGATGCGAATGTTATGCTCTATCAGACGATCCTTAAGCTCGGTG
ATACATTTCTTGCCATGCTTGGTGCTATCCTTGAACATCTCGTTTTCAGC
CAACACGAGCCCAAAGTCTGCATTAAATGTGTCGAAGTTGATCAGCTCCT
TTGACATGAACAAGCGCAGAATTTCCTTATAGGCGGGCACTTCCTCCAGC
TTCTTGTTCTTCGAAAGATGTGCCATCATGTCGCTCTGTTCGTTGTCGAA
GGGAGCTAAAACGCAATAAAGCACGGCACAAACCAGCTTTTCCGTCAGTT
CCTTCTTCTGCTCCTCGGTAAGTTCAATTTCGACCTCAGCCTCTGTAGCA
ACCTCTGGCTTCTTATCCTTGTCATCTTCCTCCTTCTTTTTCTTATCGTC
ATCCTTCTTTTTTTGCTCATCCGTGGACGCGGCAGAGTCTACGGGTGTAA
GGCCAGTCTTCTTGCGCGGAGGCTCCGCTATGGCCTGATAATGGCGCGAA
GTATTCAGGAAGGAGGTGTCTCTGTTCAACTGAATCATTAGATAGTAGAA
CTTCAGCTTCAGATCATGCTGTGCCGGATCGTCA
BS07184.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1100-PA | 1509 | Rpn5-RA | 642..1509 | 884..17 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn5-RA | 1897 | CG1100-RA | 866..1733 | 884..17 | 4340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:15:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5790417..5790825 | 884..476 | 2045 | 100 | Minus |
| 3R | 32079331 | 3R | 5791103..5791405 | 319..17 | 1515 | 100 | Minus |
| 3R | 32079331 | 3R | 5790884..5791040 | 476..320 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 15:15:10 has no hits.
BS07184.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:00 Download gff for
BS07184.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-PA | 643..1509 | 17..883 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:13 Download gff for
BS07184.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1100-PA | 643..1509 | 17..883 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:04:01 Download gff for
BS07184.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 867..1741 | 9..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:43:00 Download gff for
BS07184.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 867..1741 | 9..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:43:00 Download gff for
BS07184.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5790418..5790824 | 477..883 | 100 | -> | Minus |
| 3R | 5790884..5791040 | 320..476 | 100 | -> | Minus |
| 3R | 5791103..5791413 | 9..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:04:01 Download gff for
BS07184.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1616140..1616546 | 477..883 | 100 | -> | Minus |
| arm_3R | 1616606..1616762 | 320..476 | 100 | -> | Minus |
| arm_3R | 1616825..1617135 | 9..319 | 98 | | Minus |
BS07184.5prime Sequence
876 bp (764 high quality bases) assembled on 2006-01-06
> BS07184.5prime
GAAGTTATCAGTCGACATGGACACCTATTTGTTTGATGGCGGCCGCATCA
CCAAGATGGAGGTGGACTACGAGCCGGCGTGCAACGAGAAAATCCCCCTG
GCTAAGGAGCTGGCCAAGAAAAACCCCGACGCCTTTCACGAAGCCATCGA
GATGATGCTACAACTGGAGAAGCAGACGCGCCTGGGCGCCGACATGGTTT
CTTGCTCACGAGTCCTGGTTGCCATCTGTCAGATCTGCTTTGACGCGTCC
AACTGGAACGCCCTCAACGAGTACGTGTCTCTGCTGGTACGCCGTCGCTC
CCAGCTGAAGCAGGCTGTGGTCAAGATGATCCAGGAGTGCGTCACGTACG
TGGACAAGACGCCCGACAAAGAGACTAAGCTGAAGCTTATCGACACACTT
CGCTCGGTTACCGAGGGCAAGATTTACGTTGAGATCGAGCGGGCCCGTCT
TACTAAGATTCTGGCGGACATTAAGGAAGCCGATGGCGATGTCGCCGGAG
CTGCCACTGTCATGGAGGAGCTTCAAGTGGAGACTTATGGCTCGATGGAT
AAGCGCGAGAAGGTGGAGCTCATCCTGGAGCAGATGCGCCTTTGTCTGTT
GAAGGAGGATTACGTATCCACGCAGATCATTGCCAAGAAGATCAGTATAA
AGTTCTTTGACGATCCGGCACAGCATGATCTGAAGCTGAAGTTCTACTAT
CTAATGATTCAGTTGAACAGAGACACCTCCTTCCTGAATACTTCGCGCCA
TTATCAGGCCATAGCGGAGCCTCCGCGCAAGAAGACTGGCCTTACACCCG
TAGACTCTGCCGCGTCCACGGATGAGCAAAAAAAGAAGGATGACGATNAG
AAAAAGAAGGAAGAAGATGACCAGGA
BS07184.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1100-PA | 1509 | Rpn5-RA | 1..855 | 17..871 | 4231 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:17:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn5-RA | 1897 | CG1100-RA | 225..1084 | 17..876 | 4259 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5789776..5790635 | 17..876 | 4259 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:17:13 has no hits.
BS07184.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:02 Download gff for
BS07184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:14 Download gff for
BS07184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1100-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:58:03 Download gff for
BS07184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 221..1083 | 9..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:16:22 Download gff for
BS07184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 221..1083 | 9..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:16:22 Download gff for
BS07184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5789772..5790634 | 9..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:58:03 Download gff for
BS07184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1615494..1616356 | 9..875 | 99 | | Plus |
BS07184.complete Sequence
1541 bp (1541 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635758
> BS07184.complete
GAAGTTATCAGTCGACATGGACACCTATTTGTTTGATGGCGGCCGCATCA
CCAAGATGGAGGTGGACTACGAGCCGGCGTGCAACGAGAAAATCCCCCTG
GCTAAGGAGCTGGCCAAGAAAAACCCCGACGCCTTTCACGAAGCCATCGA
GATGATGCTACAACTGGAGAAGCAGACGCGCCTGGGCGCCGACATGGTTT
CTTGCTCACGAGTCCTGGTTGCCATCTGTCAGATCTGCTTTGACGCGTCC
AACTGGAACGCCCTCAACGAGTACGTGTCTCTGCTGGTACGCCGTCGCTC
CCAGCTGAAGCAGGCTGTGGTCAAGATGATCCAGGAGTGCGTCACGTACG
TGGACAAGACGCCCGACAAAGAGACTAAGCTGAAGCTTATCGACACACTT
CGCTCGGTTACCGAGGGCAAGATTTACGTTGAGATCGAGCGGGCCCGTCT
TACTAAGATTCTGGCGGACATTAAGGAAGCCGATGGCGATGTCGCCGGAG
CTGCCACTGTCATGGAGGAGCTTCAAGTGGAGACTTATGGCTCGATGGAT
AAGCGCGAGAAGGTGGAGCTCATCCTGGAGCAGATGCGCCTTTGTCTGTT
GAAGGAGGATTACGTATCCACGCAGATCATTGCCAAGAAGATCAGTATAA
AGTTCTTTGACGATCCGGCACAGCATGATCTGAAGCTGAAGTTCTACTAT
CTAATGATTCAGTTGAACAGAGACACCTCCTTCCTGAATACTTCGCGCCA
TTATCAGGCCATAGCGGAGCCTCCGCGCAAGAAGACTGGCCTTACACCCG
TAGACTCTGCCGCGTCCACGGATGAGCAAAAAAAGAAGGATGACGATAAG
AAAAAGAAGGAGGAAGATGACAAGGATAAGAAGCCAGAGGTTGCTACAGA
GGCTGAGGTCGAAATTGAACTTACCGAGGAGCAGAAGAAGGAACTGACGG
AAAAGCTGGTTTGTGCCGTGCTTTATTGCGTTTTAGCTCCCTTCGACAAC
GAACAGAGCGACATGATGGCACATCTTTCGAAGAACAAGAAGCTGGAGGA
AGTGCCCGCCTATAAGGAAATTCTGCGCTTGTTCATGTCAAAGGAGCTGA
TCAACTTCGACACATTTAATGCAGACTTTGGGCTCGTGTTGGCTGAAAAC
GAGATGTTCAAGGATAGCACCAAGCATGGCAAGAAATGTATCACCGAGCT
TAAGGATCGTCTGATAGAGCATAACATTCGCATCATTGCCATGTATTACT
CCCGCCTGCATTTGGCGCGCATGAGTGAGCTGCTGAACCTGCCCACCAGC
CGCTGCGAGGAGTATCTTTCTAAACTGGCCAACACCGACACCATCCGCGT
AAAGATCGACCGTCCCGCCGGCATCATTTACTTCACCCAAAAAAAGAGCG
CCTCCGACATCCTGAACAACTGGGCCACCGACGTCAACCAGCTGATGTCC
CTGGTCAACAAGACCTGCCACTTGATTAACAAGGAAGAGTGCGTCTACTC
CGTCATGTGTGCTGTCGAGGATTAAAAGCTTTCTAGACCAT
BS07184.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:49:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn5-RA | 1509 | CG1100-PA | 1..1509 | 17..1525 | 7545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn5-RA | 1897 | CG1100-RA | 225..1733 | 17..1525 | 7545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5789776..5790825 | 17..1066 | 5250 | 100 | Plus |
| 3R | 32079331 | 3R | 5791103..5791405 | 1223..1525 | 1515 | 100 | Plus |
| 3R | 32079331 | 3R | 5790884..5791040 | 1066..1222 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:49:14 has no hits.
BS07184.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:16 Download gff for
BS07184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 1..1509 | 17..1525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:41 Download gff for
BS07184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 225..1745 | 9..1533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:03 Download gff for
BS07184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 225..1731 | 17..1523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:16 Download gff for
BS07184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 225..1745 | 9..1533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:17 Download gff for
BS07184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 225..1731 | 17..1523 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:17 Download gff for
BS07184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5789776..5790824 | 17..1065 | 100 | -> | Plus |
| 3R | 5790884..5791040 | 1066..1222 | 100 | -> | Plus |
| 3R | 5791103..5791403 | 1223..1523 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:03 Download gff for
BS07184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1615498..1616546 | 17..1065 | 100 | -> | Plus |
| arm_3R | 1616606..1616762 | 1066..1222 | 100 | -> | Plus |
| arm_3R | 1616825..1617125 | 1223..1523 | 100 | | Plus |
BS07184.pep Sequence
Translation from 16 to 1524
> BS07184.pep
MDTYLFDGGRITKMEVDYEPACNEKIPLAKELAKKNPDAFHEAIEMMLQL
EKQTRLGADMVSCSRVLVAICQICFDASNWNALNEYVSLLVRRRSQLKQA
VVKMIQECVTYVDKTPDKETKLKLIDTLRSVTEGKIYVEIERARLTKILA
DIKEADGDVAGAATVMEELQVETYGSMDKREKVELILEQMRLCLLKEDYV
STQIIAKKISIKFFDDPAQHDLKLKFYYLMIQLNRDTSFLNTSRHYQAIA
EPPRKKTGLTPVDSAASTDEQKKKDDDKKKKEEDDKDKKPEVATEAEVEI
ELTEEQKKELTEKLVCAVLYCVLAPFDNEQSDMMAHLSKNKKLEEVPAYK
EILRLFMSKELINFDTFNADFGLVLAENEMFKDSTKHGKKCITELKDRLI
EHNIRIIAMYYSRLHLARMSELLNLPTSRCEEYLSKLANTDTIRVKIDRP
AGIIYFTQKKSASDILNNWATDVNQLMSLVNKTCHLINKEECVYSVMCAV
ED*
BS07184.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn5-PA | 502 | CG1100-PA | 1..502 | 1..502 | 2562 | 100 | Plus |
