Clone Sequence Records
BS07189.complete Sequence
1904 bp assembled on 2010-04-23
GenBank Submission: KX803560
> BS07189.complete
GAAGTTATCAGTCGACATGGAGTTCCTTAGCGCCCAGTGCGCTGCCCGTT
CGGCGGGTCCGGCAAATACGCTGATGTCCTTGCTCCTGTCCACGCTGATT
ACCAAGTACTGCGATTTGAGCGGACAAAATCAATGGCCAGAGGACAAGGG
CGATTGGCTGGAACAGGCTGGTGGCTTCAAGCATGACTACGACTTTATTG
TGATTGGATCGGGTACATCGGGCGCAGTGGTTGCTGGTCGTCTGGCCGAG
GTAAAGAACTGGAAAGTGCTGCTCCTGGAGGCCGGTGGTGATCCACCAAT
TGAGACGGAGTTCGTTGCCTGGCACATGGCCACCCAATTCTCCGAATGGG
ATTGGCAATACCACTCGAAACCGAACGGACGTGCGTGCATGGCGATGAAG
GGCGAAAGTTGCCACTGGCCGAGGGGCAAAATGTTGGGCGGCACGAATGG
AATGAATGCCATGATCTATGCCAGAGGAACGCGTAAGGATTTCGATGACT
GGGAAGAGAGGGGCAATCCCGGATGGGGCTACGATGAGGTGCTGAAACAC
TTCCGCAAGGCCGAGGATCTGCGTTCCACGCGACCGGACTACAAGCCCGG
CGATCATGGCGTCGGTGGACCAATGGGACTGAACAATTATGTATCCGACA
ACGAATTCCGCACTACCATACGCGCCGGCATGCAGGAGATGGGCTACGGC
AGTGCTCCGGACTTTACCGAAGGCTCGTTTGTGGGTCAAATGGACATCTT
GGGCACTCAGGATGGTGGTCGTCGTATCACCACCGCCCGATCTCATCTGA
AGAAGAATACGCCCAATCTGCACATCCTGCGACATGCTCACGTCAAGAAG
ATCAATCTGGATCGTAACAATCGAGCCGAAAGTGTGACCTTTGTGCATCG
CGGCAAGAAGGAGTACACGGTGAAGGCCAGTAAGGAGGTCATCGTGTCCG
CCGGTGCCATTGGTTCACCTCAGATCCTGTTGCTTTCAGGCATCGGTCCC
GCCGATCACTTGAAGAGCCTGGGAATTCCCGTGAAACTGGACCTTCCCGT
GGGTGAGAACCTCAAGGATCACGCCAGTCTGCCGATGATCTTCCAGATCG
ACAAGTCAACTGCTCGCAAACCAACCGAGGAGGAGCTAGTGGATGCCATG
TACAATCTGCTGATGGGTCGTTATAGCAAACTGTTGCACCACGAGGCCAC
CGCCTTGACGGGATTCATTAACACCACCTCGATTGAGGGACCCAATCCGG
ACATCCAGACCACCAATTTCTTCAGCCTAATGCAGAGTCCTGAACTTAAG
GGCTATGTGGCTGCAACCGGATTCAATGATCGCGTGGCCAAGAGCATTTT
GTCGGCCAATCAGGAGACCAATACCTACATTACGTATTTGCTGCATCTGA
AGCCATTCTCGGCGGGAAGTTTGACCTTGCAATCTGCGAACTATTTGGAC
GCTCCGATCATCGATCCCGGTTATATGACCGATGAGCGCGATGTAGACAC
CTATATTAGGGCCTTGAACATCTACAAGAACTTGCCGAATACCAAAGCCT
TCAGTGAGAGGGAGGCCGCACTCCACAAACTGGATTTGGAGGCATGCAAT
GGTCTGACCTATCAGTCGGATGACTACTGGCGTTGCTATATCCGTCACAT
GACCACCACCGTTTACCATCCGGTCGGAACCACTCGCATGGGACCATCCA
CTGATCCCACTGCCGTGGTCGATCCCCAATTGAGGGTTCATGGTGCCAAG
GGATTGAGGGTGATCGATGCCAGCATTATGCCCGACATTGTGGGTGCCAA
CACCAATGCTGCATGCATTATGATCGCCGAGAAGGGGGCGGACATGATCA
AGGAGGAGTATCTGGGCGGAAAACATACCGAGCTCTAAAAGCTTTCTAGA
CCAT
BS07189.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9512-RB | 1872 | CG9512-PB | 1..1872 | 17..1888 | 9360 | 100 | Plus |
| CG9512-RA | 1872 | CG9512-PA | 1..1872 | 17..1888 | 9360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9512-RB | 2221 | CG9512-RB | 149..2020 | 17..1888 | 9360 | 100 | Plus |
| CG9512-RA | 2113 | CG9512-RA | 149..2020 | 17..1888 | 9360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14903963..14904936 | 990..17 | 4870 | 100 | Minus |
| X | 23542271 | X | 14902045..14902947 | 1888..986 | 4515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:14:17 has no hits.
BS07189.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-23 16:49:06 Download gff for
BS07189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 141..2010 | 17..1886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:46 Download gff for
BS07189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 149..2018 | 17..1886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:21:29 Download gff for
BS07189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 149..2018 | 17..1886 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:21:29 Download gff for
BS07189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14902047..14902943 | 990..1886 | 100 | <- | Minus |
| X | 14903964..14904936 | 17..989 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:46 Download gff for
BS07189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14796080..14796976 | 990..1886 | 100 | <- | Minus |
| arm_X | 14797997..14798969 | 17..989 | 100 | | Minus |
BS07189.3prime Sequence
870 bp (812 high quality bases) assembled on 2006-01-06
> BS07189.3prime
ATGGTCTAGAAAGCTTTTAGAGCTCGGTATGTTTTCCGCCCAGATACTCC
TCCTTGATCATGTCCGCCCCCTTCTCGGCGATCATAATGCATGCAGCATT
GGTGTTGGCACCCACAATGTCGGGCATAATGCTGGCATCGATCACCCTCA
ATCCCTTGGCACCATGAACCCTCAATTGGGGATCGACCACGGCAGTGGGA
TCAGTGGATGGTCCCATGCGAGTGGTTCCGACCGGATGGTAAACGGTGGT
GGTCATGTGACGGATATAGCAACGCCAGTAGTCATCCGACTGATAGGTCA
GACCATTGCATGCCTCCAAATCCAGTTTGTGGAGTGCGGCCTCCCTCTCA
CTGAAGGCTTTGGTATTCGGCAAGTTCTTGTAGATGTTCAAGGCCCTAAT
ATAGGTGTCTACATCGCGCTCATCGGTCATATAACCGGGATCGATGATCG
GAGCGTCCAAATAGTTCGCAGATTGCAAGGTCAAACTTCCCGCCGAGAAT
GGCTTCAGATGCAGCAAATACGTAATGTAGGTATTGGTCTCCTGATTGGC
CGACAAAATGCTCTTGGCCACGCGATCATTGAATCCGGTTGCAGCCACAT
AGCCCTTAAGTTCAGGACTCTGCATTAGGCTGAAGAAATTGGTGGTCTGG
ATGTCCGGATTGGGTCCCTCAATCGAGGTGGTGTTAATGAATCCCGTCAA
GGCGGTGGCCTCGTGGTGCAACAGTTTGCTATAACGACCCATCAGCAGAT
TGTACATGGCATCCACTAGCTCCTCCTCGGTTGGTTTGCGAGCAGTTGAC
TTGTCGATCTGGAAGATCATCGGCAGACTGGCGTGATCCTTGAGGTTCTC
ACCCACGGGAAGGTCCAGTT
BS07189.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9512-PA | 1872 | CG9512-RA | 1019..1872 | 870..17 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9512-RB | 2221 | CG9512-RB | 1167..2020 | 870..17 | 4270 | 100 | Minus |
| CG9512-RA | 2113 | CG9512-RA | 1167..2020 | 870..17 | 4270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14902045..14902898 | 17..870 | 4270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:57:20 has no hits.
BS07189.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:12 Download gff for
BS07189.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-PA | 1019..1872 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:27 Download gff for
BS07189.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-PA | 1019..1872 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:57:35 Download gff for
BS07189.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 1167..2023 | 12..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:19 Download gff for
BS07189.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 1167..2023 | 12..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:19 Download gff for
BS07189.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14902042..14902898 | 12..870 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:57:35 Download gff for
BS07189.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14796075..14796931 | 12..870 | 99 | | Plus |
BS07189.5prime Sequence
953 bp (735 high quality bases) assembled on 2006-01-06
> BS07189.5prime
GAAGTTATCAGTCGACATGGAGTTCCTTAGCGCCCAGTGCGCTGCCCGTT
CGGCGGGTCCGGCAAATACGCTGATGTCCTTGCTCCTGTCCACGCTGATT
ACCAAGTACTGCGATTTGAGCGGACAAAATCAATGGCCAGAGGACAAGGG
CGATTGGCTGGAACAGGCTGGTGGCTTCAAGCATGACTACGACTTTATTG
TGATTGGATCGGGTACATCGGGCGCAGTGGTTGCTGGTCGTCTGGCCGAG
GTAAAGAACTGGAAAGTGCTGCTCCTGGAGGCCGGTGGTGATCCACCAAT
TGAGACGGAGTTCGTTGCCTGGCACATGGCCACCCAATTCTCCGAATGGG
ATTGGCAATACCACTCGAAACCGAACGGACGTGCGTGCATGGCGATGAAG
GGCGAAAGTTGCCACTGGCCGAGGGGCAAAATGTTGGGCGGCACGAATGG
AATGAATGCCATGATCTATGCCAGAGGAACGCGTAAGGATTTCGATGACT
GGGAAGAGAGGGGCAATCCCGGATGGGGCTACGATGAGGTGCTGAAACAC
TTCCGCAAGGCCGAGGATCTGCGTTCCACGCGACCGGACTACAAGCCCGG
CGATCATGGCGTCGGTGGACCAATGGGACTGAACAATTATGTATCCGACA
ACGAATTCCGCACTACCATACGCGCCGGCATGCAGGAGATGGGCTACGGC
AGTGCTCCGGACTTTACCGAANGCTCGTTTGTGGGTCAAATGGACATCTT
GGGCACTCAGGATGGTGGTCGTCGTATCACCACCGCCCGATCTCATCTGA
AGAAAGATACGCCCAATCTGCACATCCTGCGACATGCTCACGTCAAGAAG
ATCAATCTGGATCGTAAACATCGAGCCGAAAGTGTGACCTTTGTGCATCG
CGGCAAGAAGGAGTACACCGTGAAAGCCAGTAAAGAGGTCATCGTGTCCG
CCG
BS07189.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9512-PA | 1872 | CG9512-RA | 1..937 | 17..953 | 4491 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9512-RB | 2221 | CG9512-RB | 149..1085 | 17..953 | 4569 | 99.1 | Plus |
| CG9512-RA | 2113 | CG9512-RA | 149..1085 | 17..953 | 4569 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14904000..14904936 | 953..17 | 4569 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:33:54 has no hits.
BS07189.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:13 Download gff for
BS07189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-PA | 1..937 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:28 Download gff for
BS07189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-PA | 1..937 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:26:09 Download gff for
BS07189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 142..1085 | 9..953 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:19:08 Download gff for
BS07189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 142..1085 | 9..953 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:19:08 Download gff for
BS07189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14904000..14904940 | 9..953 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:26:09 Download gff for
BS07189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14798033..14798973 | 9..953 | 98 | | Minus |
BS07189.pep Sequence
Translation from 16 to 1887
> BS07189.pep
MEFLSAQCAARSAGPANTLMSLLLSTLITKYCDLSGQNQWPEDKGDWLEQ
AGGFKHDYDFIVIGSGTSGAVVAGRLAEVKNWKVLLLEAGGDPPIETEFV
AWHMATQFSEWDWQYHSKPNGRACMAMKGESCHWPRGKMLGGTNGMNAMI
YARGTRKDFDDWEERGNPGWGYDEVLKHFRKAEDLRSTRPDYKPGDHGVG
GPMGLNNYVSDNEFRTTIRAGMQEMGYGSAPDFTEGSFVGQMDILGTQDG
GRRITTARSHLKKNTPNLHILRHAHVKKINLDRNNRAESVTFVHRGKKEY
TVKASKEVIVSAGAIGSPQILLLSGIGPADHLKSLGIPVKLDLPVGENLK
DHASLPMIFQIDKSTARKPTEEELVDAMYNLLMGRYSKLLHHEATALTGF
INTTSIEGPNPDIQTTNFFSLMQSPELKGYVAATGFNDRVAKSILSANQE
TNTYITYLLHLKPFSAGSLTLQSANYLDAPIIDPGYMTDERDVDTYIRAL
NIYKNLPNTKAFSEREAALHKLDLEACNGLTYQSDDYWRCYIRHMTTTVY
HPVGTTRMGPSTDPTAVVDPQLRVHGAKGLRVIDASIMPDIVGANTNAAC
IMIAEKGADMIKEEYLGGKHTEL*
BS07189.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9512-PB | 623 | CG9512-PB | 1..623 | 1..623 | 3312 | 100 | Plus |
| CG9512-PA | 623 | CG9512-PA | 1..623 | 1..623 | 3312 | 100 | Plus |
| CG9509-PB | 646 | CG9509-PB | 36..627 | 19..617 | 1144 | 39.2 | Plus |
| CG9509-PA | 646 | CG9509-PA | 36..627 | 19..617 | 1144 | 39.2 | Plus |
| CG45065-PA | 613 | CG45065-PA | 30..604 | 41..615 | 972 | 37.9 | Plus |
