Clone BS07193 Report

Search the DGRC for BS07193

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:71
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptFmo-2-RA
Protein status:BS07193.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07193.3prime Sequence

921 bp (812 high quality bases) assembled on 2006-01-06

> BS07193.3prime
ATGGTCTAGAAAGCTTTCATACAATAGCTTCTCCGTTCTTCAAAAAGTTT
TCATCGTCCAAAATCGTATACTTGTTGCTCCTGTACGTGTCCAATTCAAA
AATGTACTTCTTGCCGCAGTCCTTCATTAGCTTGTGGATAACTGGCTTGA
TGTTCTCGATGCCCGCGATACTGGCCAGTTCATTGTAGTAGACAAACTGT
CGCTCGCCCATCTGATGTGCTTTCTTCTGGTTGCGCACGCCGCAGCCCCA
CCGCTCTCCGATCTCCTGCTCCAGATCGGCAATCATCTGCTCCCGGGAGG
GAAACTTCCGCTGACCTGTGAAGAACTTCAGCGTGAAGCGCACCTGCATG
TCGAAGATGTGGGTGGGAATCACGTTGAAGGGCAGGCCCACAAAGGCCAT
GGTCGGGTGGTTGATGTTGATGCAGTGCTTCCACAGTGGCTGCACGAAGT
TGTCTATCACCTGGACACCCACATCGGTGCTGAGGCAGGGGAATGTGTAC
TTGTAGCCGGTGCAGAACATCACGTGGTCAAAGCTCTCCGTGCTGCCGTC
CGTGAAGACGGCTCCATCCTTTGTGAAGCGTTTCACATCCGGCTTCTGCG
TTACGTTGCCCATGAATGCTGTGTTAGGGGTCGTGGAAAGGTGGTGGCTT
AGGAAGACCTGCTTGGCAGCCAAGCGAACATGGTTGGTGATGTCCATGCC
ACTGGGGCCGGCGCCAATGATCAGCACACGCGCGTCTTTAAACTTATCTG
CCTTGCGGTAGAGGTGGCTGTGCATCTTGTTGCCCTCGAACAGATCTAAT
CCCTCGACTTCCGGGAGGTCCGGTTCCGTGTAGTGCCCGTTGCAGACATA
AACGAAGTCGTAGTAGACTGGGTCACAGGTATCCGTGCTGTGGTCCATAC
GTAGACCTCCCAGTCCTCCAA

BS07193.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3174-PA 1290 Fmo-2-RA 411..1290 896..17 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-2-RA 1663 CG3174-RA 472..1377 921..17 4490 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 15:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6643003..6643547 197..741 2710 99.8 Plus
2R 25286936 2R 6642704..6642886 17..199 915 100 Plus
2R 25286936 2R 6644212..6644385 736..908 820 99.4 Plus
Blast to na_te.dros performed on 2015-02-08 15:19:01 has no hits.

BS07193.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:20 Download gff for BS07193.3prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-PA 387..1290 17..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:39 Download gff for BS07193.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3174-PA 387..1290 17..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 00:04:37 Download gff for BS07193.3prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 474..1377 17..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:43:33 Download gff for BS07193.3prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 474..1377 17..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:43:33 Download gff for BS07193.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6642704..6642883 17..196 100 <- Plus
2R 6643003..6643541 197..735 100 <- Plus
2R 6644212..6644391 736..914 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 00:04:37 Download gff for BS07193.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2530209..2530388 17..196 100 <- Plus
arm_2R 2530508..2531046 197..735 100 <- Plus
arm_2R 2531717..2531896 736..914 97   Plus

BS07193.5prime Sequence

909 bp (840 high quality bases) assembled on 2006-01-06

> BS07193.5prime
GAAGTTATCAGTCGACATGATCAAAACTTCAGTGGACAAGCGTCGTGTTT
GCGTAATAGGAGCTGGAACAGCGGGGTTGTGCGCGCTGAAGAACTCCCTG
GAAGCGGGTCTGGATGCGGTGGCCTACGAACGAGGCACCGAAATCGGAGG
AACATGGATTTTCTCCGAGGAAATGCCCAAGGACGAGTACGACGAGGTGC
ACAGCAGCATGTACGAAGGCCTGCGCACCAATCTTCCAAAGGAGGTCATG
GGCTATCCGGACTACTCGTACCCCGACGATATCACCGAGTCTTTCATCAC
CTCCAACCAGGTGCTAGAATTTCTGCGCTCCTACGCGGAACACTTCAAGC
TAAAGGCCCACATCAAGCTCCAGCACGAGGTGATAAGAGTGCGTCCTCGC
TTGGACGACTGGGAGGTCTACGTATGGGACCACAGCACGGATACCTGTGA
CCCAGTCTACTACGACTTCGTTTATGTCTGCAACGGGCACTACACGGAAC
CGGACCTCCCGGAAGTCGAGGGATTAGATCTGTTCGAGGGCAACAAGATG
CACAGCCACCTCTACCGCAAGGCAGATAAGTTTAAAGACGCGCGTGTGCT
GATCATTGGCGCCGGCCCCAGTGGCATGGACATCACCAACCATGTTCGCT
TGGCTGCCAAGCAGGTCTTCCTAAGCCACCACCTTTCCACGACCCCTAAC
ACAGCATTCATGGGCAACGTAACGCAGAAGCCGGATGTGAAACGCTTCAC
AAAGGATGGAGCCGTCTTCACGGACGGCAGCACGGAGAGCTTTGACCACG
TGATGTTCTGCACCGGCTACAAGTACACATTCCCCTGCCTCAGCACCGAT
GTGGGTGTCCAGGTGATAGACAACTTCGTGCAGCCACTGTGGAAGCACTG
CATCAACAT

BS07193.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3174-PA 1290 Fmo-2-RA 1..893 17..909 4465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-2-RA 1663 CG3174-RA 88..980 17..909 4465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6643220..6643547 909..582 1625 99.7 Minus
2R 25286936 2R 6644492..6644684 417..225 965 100 Minus
2R 25286936 2R 6644212..6644385 587..414 870 100 Minus
2R 25286936 2R 6644742..6644906 225..61 825 100 Minus
2R 25286936 2R 6644966..6645011 62..17 230 100 Minus
Blast to na_te.dros performed on 2015-02-02 10:53:09 has no hits.

BS07193.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:21 Download gff for BS07193.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-PA 1..893 17..909 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:40 Download gff for BS07193.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3174-PA 1..893 17..909 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:34:01 Download gff for BS07193.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 88..980 17..909 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:42:50 Download gff for BS07193.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 88..980 17..909 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:42:50 Download gff for BS07193.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6643220..6643541 588..909 100 <- Minus
2R 6644212..6644383 416..587 100 <- Minus
2R 6644494..6644683 226..415 100 <- Minus
2R 6644742..6644904 63..225 100 <- Minus
2R 6644966..6645011 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:34:01 Download gff for BS07193.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2530725..2531046 588..909 100 <- Minus
arm_2R 2531717..2531888 416..587 100 <- Minus
arm_2R 2531999..2532188 226..415 100 <- Minus
arm_2R 2532247..2532409 63..225 100 <- Minus
arm_2R 2532471..2532516 17..62 100   Minus

BS07193.complete Sequence

1322 bp (1322 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635761

> BS07193.complete
GAAGTTATCAGTCGACATGATCAAAACTTCAGTGGACAAGCGTCGTGTTT
GCGTAATAGGAGCTGGAACAGCGGGGTTGTGCGCGCTGAAGAACTCCCTG
GAAGCGGGTCTGGATGCGGTGGCCTACGAACGAGGCACCGAAATCGGAGG
AACATGGATTTTCTCCGAGGAAATGCCCAAGGACGAGTACGACGAGGTGC
ACAGCAGCATGTACGAAGGCCTGCGCACCAATCTTCCAAAGGAGGTCATG
GGCTATCCGGACTACTCGTACCCCGACGATATCACCGAGTCTTTCATCAC
CTCCAACCAGGTGCTAGAATTTCTGCGCTCCTACGCGGAACACTTCAAGC
TAAAGGCCCACATCAAGCTCCAGCACGAGGTGATAAGAGTGCGTCCTCGC
TTGGACGACTGGGAGGTCTACGTATGGGACCACAGCACGGATACCTGTGA
CCCAGTCTACTACGACTTCGTTTATGTCTGCAACGGGCACTACACGGAAC
CGGACCTCCCGGAAGTCGAGGGATTAGATCTGTTCGAGGGCAACAAGATG
CACAGCCACCTCTACCGCAAGGCAGATAAGTTTAAAGACGCGCGTGTGCT
GATCATTGGCGCCGGCCCCAGTGGCATGGACATCACCAACCATGTTCGCT
TGGCTGCCAAGCAGGTCTTCCTAAGCCACCACCTTTCCACGACCCCTAAC
ACAGCATTCATGGGCAACGTAACGCAGAAGCCGGATGTGAAACGCTTCAC
AAAGGATGGAGCCGTCTTCACGGACGGCAGCACGGAGAGCTTTGACCACG
TGATGTTCTGCACCGGCTACAAGTACACATTCCCCTGCCTCAGCACCGAT
GTGGGTGTCCAGGTGATAGACAACTTCGTGCAGCCACTGTGGAAGCACTG
CATCAACATCAACCACCCGACCATGGCCTTTGTGGGCCTGCCCTTCAACG
TGATTCCCACCCACATCTTCGACATGCAGGTGCGCTTCACGCTGAAGTTC
TTCACAGGTCAGCGGAAGTTTCCCTCCCGGGAGCAGATGATTGCCGATCT
GGAGCAGGAGATCGGAGAGCGGTGGGGCTGCGGCGTGCGCAACCAGAAGA
AAGCACATCAGATGGGCGAGCGACAGTTTGTCTACTACAATGAACTGGCC
AGTATCGCGGGCATCGAGAACATCAAGCCAGTTATCCACAAGCTAATGAA
GGACTGCGGCAAGAAGTACATTTTTGAATTGGACACGTACAGGAGCAACA
AGTATACGATTTTGGACGATGAAAACTTTTTGAAGAACGGAGAAGCTATT
GTATGAAAGCTTTCTAGACCAT

BS07193.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-2-RA 1290 CG3174-PA 1..1290 17..1306 6450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-2-RA 1663 CG3174-RA 88..1377 17..1306 6450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6643003..6643547 1126..582 2710 99.8 Minus
2R 25286936 2R 6644492..6644684 417..225 965 100 Minus
2R 25286936 2R 6642704..6642886 1306..1124 915 100 Minus
2R 25286936 2R 6644212..6644385 587..414 870 100 Minus
2R 25286936 2R 6644742..6644906 225..61 825 100 Minus
2R 25286936 2R 6644966..6645011 62..17 230 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:46:42 has no hits.

BS07193.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:22 Download gff for BS07193.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 1..1290 17..1306 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:49 Download gff for BS07193.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 70..1359 17..1306 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:34 Download gff for BS07193.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 88..1376 17..1305 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:22 Download gff for BS07193.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 70..1359 17..1306 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:26 Download gff for BS07193.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-2-RA 88..1376 17..1305 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:26 Download gff for BS07193.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6644742..6644904 63..225 100 <- Minus
2R 6644966..6645011 17..62 100   Minus
2R 6642705..6642883 1127..1305 100 <- Minus
2R 6643003..6643541 588..1126 100 <- Minus
2R 6644212..6644383 416..587 100 <- Minus
2R 6644494..6644683 226..415 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:34 Download gff for BS07193.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2530210..2530388 1127..1305 100 <- Minus
arm_2R 2530508..2531046 588..1126 100 <- Minus
arm_2R 2531717..2531888 416..587 100 <- Minus
arm_2R 2531999..2532188 226..415 100 <- Minus
arm_2R 2532247..2532409 63..225 100 <- Minus
arm_2R 2532471..2532516 17..62 100   Minus

BS07193.pep Sequence

Translation from 16 to 1305

> BS07193.pep
MIKTSVDKRRVCVIGAGTAGLCALKNSLEAGLDAVAYERGTEIGGTWIFS
EEMPKDEYDEVHSSMYEGLRTNLPKEVMGYPDYSYPDDITESFITSNQVL
EFLRSYAEHFKLKAHIKLQHEVIRVRPRLDDWEVYVWDHSTDTCDPVYYD
FVYVCNGHYTEPDLPEVEGLDLFEGNKMHSHLYRKADKFKDARVLIIGAG
PSGMDITNHVRLAAKQVFLSHHLSTTPNTAFMGNVTQKPDVKRFTKDGAV
FTDGSTESFDHVMFCTGYKYTFPCLSTDVGVQVIDNFVQPLWKHCININH
PTMAFVGLPFNVIPTHIFDMQVRFTLKFFTGQRKFPSREQMIADLEQEIG
ERWGCGVRNQKKAHQMGERQFVYYNELASIAGIENIKPVIHKLMKDCGKK
YIFELDTYRSNKYTILDDENFLKNGEAIV*

BS07193.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-2-PA 429 CG3174-PA 1..429 1..429 2312 100 Plus
Fmo-1-PA 416 CG3006-PA 4..414 11..423 969 44.1 Plus