Clone Sequence Records
BS07196.3prime Sequence
813 bp (795 high quality bases) assembled on 2006-01-06
> BS07196.3prime
ATGGTCTAGAAAGCTTTTACTCATCCTTGTTGTTGATGGCACGCAGGCGT
TCGAGCTCGGCACGCTCCTCCTTGTTGCGCAACAGGGGGACATTGTAGTC
GAAGGCGTAGAAGAAGCCCTTGGGCTCGCCGGTCTCCTCGGGTCCGGGCA
CATATGGCGGCTCCTCGTGCACGTAGGGCTGGTACTCGGGCTCAGTGGGC
TGGTAGCGACCCTCCTGCTGGTACTCGGCGGCATAAGGATCGGGATTGTG
GCCAGCGGCGGCGGCCAGCTCACCCCACAGCTTGAAGTGCTCCTCCTCGG
CCTTGAGGACAGCCGGAGTCTTAGTGGCCGGCAGTTTAAGGTGTGCCGGA
CGATTGTCCTCCACATGGAAACCGGTCTTATCAGCATAATAGTTGGCCAC
AAAGTCACGGCCATGTGGTTGGACATACTTGTACGATCCGGTCACTTTGC
CCGTCTCATCGCGCTTCTCGTTCTTGCCCTGGTTCCAATCCCTATAGCCA
TAGGCAAATTGACCCAAACCATCCTGACCATGATACTGATGGGCATCGTA
GTGCTCCTCCACATACTCCTCGGGATGCTCGATCACACGACCCATGTAGA
CGAACTCTCCCTTCTCGTTGCGCGCCTCGGGCAGGGGATTCTCACCGGTT
TTCGGGGCATACTCGATGTCGCCAATGCCACGCAGTTGGGCGCTGTTAAG
GAATTGCTGCGCCTCCTCGGGAGTTATGTTGATCTTGAAGATGTTCTCAC
CGCTGGCTAGTGTGGCCAGCAACAGGGCAGCCAAGATGTAGCACTTCATG
TCGACTGATAACT
BS07196.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3672-PA | 783 | CG3672-RA | 1..783 | 799..17 | 3915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:06:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr67B-RA | 1010 | CG3672-RA | 93..875 | 799..17 | 3915 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9405289..9406039 | 767..17 | 3755 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:06:11 has no hits.
BS07196.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:22 Download gff for
BS07196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3672-PA | 1..783 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:42 Download gff for
BS07196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3672-PA | 1..783 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:20:36 Download gff for
BS07196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67B-RA | 81..879 | 11..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:48:49 Download gff for
BS07196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67B-RA | 81..879 | 11..809 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:48:49 Download gff for
BS07196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9404877..9404921 | 767..809 | 91 | -> | Minus |
| 3L | 9405290..9406043 | 11..766 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:20:36 Download gff for
BS07196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9397977..9398021 | 767..809 | 91 | -> | Minus |
| arm_3L | 9398390..9399143 | 11..766 | 99 | | Minus |
BS07196.5prime Sequence
813 bp (805 high quality bases) assembled on 2006-01-06
> BS07196.5prime
GAAGTTATCAGTCGACATGAAGTGCTACATCTTGGCTGCCCTGTTGCTGG
CCACACTAGCCAGCGGTGAGAACATCTTCAAGATCAACATAACTCCCGAG
GAGGCGCAGCAATTCCTTAACAGCGCCCAACTGCGTGGCATTGGCGACAT
CGAGTATGCCCCGAAAACCGGTGAGAATCCCCTGCCCGAGGCGCGCAACG
AGAAGGGAGAGTTCGTCTACATGGGTCGTGTGATCGAGCATCCCGAGGAG
TATGTGGAGGAGCACTACGATGCCCATCAGTATCATGGTCAGGATGGTTT
GGGTCAATTTGCCTATGGCTATAGGGATTGGAACCAGGGCAAGAACGAGA
AGCGCGATGAGACGGGCAAAGTGACCGGATCGTACAAGTATGTCCAACCA
CATGGCCGTGACTTTGTGGCCAACTATTATGCTGATAAGACCGGTTTCCA
TGTGGAGGACAATCGTCCGGCACACCTTAAACTGCCGGCCACTAAGACTC
CGGCTGTCCTCAAGGCCGAGGAGGAGCACTTCAAGCTGTGGGGTGAGCTG
GCCGCCGCCGCTGGCCACAATCCCGATCCTTATGCCGCCGAGTACCAGCA
GGAGGGTCGCTACCAGCCCACTGAGCCCGAGTACCAGCCCTACGTGCACG
AGGAGCCGCCATATGTGCCCGGACCCGAGGAGACCGGCGAGCCCAAGGGC
TTCTTCTACGCCTTCGACTACAATGTCCCCCTGTTGCGCAACAAGGAGGA
GCGTGCCGAGCTCGAACGCCTGCGTGCCATCAACAACAAGGATGAGTAAA
AGCTTTCTAGACC
BS07196.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3672-PA | 783 | CG3672-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr67B-RA | 1010 | CG3672-RA | 93..875 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9405289..9406039 | 49..799 | 3755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:15:53 has no hits.
BS07196.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:23 Download gff for
BS07196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3672-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:44 Download gff for
BS07196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3672-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:35:41 Download gff for
BS07196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67B-RA | 81..879 | 7..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:54 Download gff for
BS07196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67B-RA | 81..879 | 7..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:54 Download gff for
BS07196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9404877..9404921 | 7..49 | 91 | -> | Plus |
| 3L | 9405290..9406043 | 50..805 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:35:41 Download gff for
BS07196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9397977..9398021 | 7..49 | 91 | -> | Plus |
| arm_3L | 9398390..9399143 | 50..805 | 99 | | Plus |
BS07196.complete Sequence
815 bp (815 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635762
> BS07196.complete
GAAGTTATCAGTCGACATGAAGTGCTACATCTTGGCTGCCCTGTTGCTGG
CCACACTAGCCAGCGGTGAGAACATCTTCAAGATCAACATAACTCCCGAG
GAGGCGCAGCAATTCCTTAACAGCGCCCAACTGCGTGGCATTGGCGACAT
CGAGTATGCCCCGAAAACCGGTGAGAATCCCCTGCCCGAGGCGCGCAACG
AGAAGGGAGAGTTCGTCTACATGGGTCGTGTGATCGAGCATCCCGAGGAG
TATGTGGAGGAGCACTACGATGCCCATCAGTATCATGGTCAGGATGGTTT
GGGTCAATTTGCCTATGGCTATAGGGATTGGAACCAGGGCAAGAACGAGA
AGCGCGATGAGACGGGCAAAGTGACCGGATCGTACAAGTATGTCCAACCA
CATGGCCGTGACTTTGTGGCCAACTATTATGCTGATAAGACCGGTTTCCA
TGTGGAGGACAATCGTCCGGCACACCTTAAACTGCCGGCCACTAAGACTC
CGGCTGTCCTCAAGGCCGAGGAGGAGCACTTCAAGCTGTGGGGTGAGCTG
GCCGCCGCCGCTGGCCACAATCCCGATCCTTATGCCGCCGAGTACCAGCA
GGAGGGTCGCTACCAGCCCACTGAGCCCGAGTACCAGCCCTACGTGCACG
AGGAGCCGCCATATGTGCCCGGACCCGAGGAGACCGGCGAGCCCAAGGGC
TTCTTCTACGCCTTCGACTACAATGTCCCCCTGTTGCGCAACAAGGAGGA
GCGTGCCGAGCTCGAACGCCTGCGTGCCATCAACAACAAGGATGAGTAAA
AGCTTTCTAGACCAT
BS07196.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr67B-RA | 783 | CG3672-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr67B-RA | 1010 | CG3672-RA | 93..875 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9405289..9406039 | 49..799 | 3755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:36:46 has no hits.
BS07196.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:05 Download gff for
BS07196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67B-RA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:21 Download gff for
BS07196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67B-RA | 83..881 | 7..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:10 Download gff for
BS07196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67B-RA | 93..873 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:05 Download gff for
BS07196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67B-RA | 83..881 | 7..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:55 Download gff for
BS07196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67B-RA | 93..873 | 17..797 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:55 Download gff for
BS07196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9404889..9404921 | 17..49 | 100 | -> | Plus |
| 3L | 9405290..9406037 | 50..797 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:10 Download gff for
BS07196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9397989..9398021 | 17..49 | 100 | -> | Plus |
| arm_3L | 9398390..9399137 | 50..797 | 100 | | Plus |
BS07196.pep Sequence
Translation from 16 to 798
> BS07196.pep
MKCYILAALLLATLASGENIFKINITPEEAQQFLNSAQLRGIGDIEYAPK
TGENPLPEARNEKGEFVYMGRVIEHPEEYVEEHYDAHQYHGQDGLGQFAY
GYRDWNQGKNEKRDETGKVTGSYKYVQPHGRDFVANYYADKTGFHVEDNR
PAHLKLPATKTPAVLKAEEEHFKLWGELAAAAGHNPDPYAAEYQQEGRYQ
PTEPEYQPYVHEEPPYVPGPEETGEPKGFFYAFDYNVPLLRNKEERAELE
RLRAINNKDE*
BS07196.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr67B-PA | 260 | CG3672-PA | 1..260 | 1..260 | 1417 | 100 | Plus |
