Clone Sequence Records
BS07203.3prime Sequence
919 bp (802 high quality bases) assembled on 2006-01-06
> BS07203.3prime
ATGGTCTAGAAAGCTTTTATAAAGCGGCGCGTGGACGAACCATCATGCGA
ACTATTTTCAGGGAACCTTTGGGTCCATTTAAGAAACCGCGCCATAGAAT
GCCCTTGAAACCATCAACATCCCGTTCTAGAAGGCGTTGATATAGGCCAA
ATGGGTTGGTGAGATTGCAAGAGCCGCCATACCAAAAAGCTCCCGACTGC
TGAGCCGCGCAGTTTTGCTCATTTTCATCATTAACCCTATCGTGGGTACT
GAATTTCTTTCCCGTGTGGTCACGCAATGCATCGGCAGCATCGCCGTGAT
AATCCCCCAAGACATTCAGACGATACTGTTCCGATTCACTGCCGATGCTA
AAGTGATCATATAGGGCATATCTCAGCTCCTGCTTTCGATTCTGCAGCTG
AACCAAAAGCTCATAGTTGTCACTGCTCGTAATCTGATGCAATTTATCCA
ATCCGATGAAGAACTCGGTGGTTAGTGGCCCGAAACCGATCTTGTAATCC
GCCCACTTTCGATTGAAATCCTCACTGCCATCATAACGATTAACTACCAT
TGTCCAACCACCGTTTCTGACCTTCTGATCGCAAAAAACAAAGAACGGTT
CCACGTTCGAGCGGGGTCTGATTCGCACCACACCGTGCTGCTGTTTCAGG
CAGTTTGCCGGAGTGATTGGAACGGCCGCTGCACCACCGTTGGCCAGGAG
TTGCGGCTCAATGTCTAGGAATCGAGATGCCAGTGCATTGGGCGAAGCGA
GTCCCACCACCGGTGCACTTCCCGCTCTTCGCAGATCCACCAACTGCTCC
TGGAGACTGCCTATCTGCTCCTTGACACTAGCTATTTCGTTGTTCAGCGA
TTGCATTCGAGTGGTAAGACCACTTAAAGCCGAAACTGGACAGCTGCTGG
AACTCGCATTTCCCANGGA
BS07203.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1889-PA | 999 | CG1889-RA | 97..999 | 919..17 | 4496 | 99.8 | Minus |
CG1889-PB | 726 | CG1889-RB | 24..726 | 719..17 | 3515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:04:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1889-RC | 1223 | CG1889-RC | 206..1109 | 919..16 | 4509 | 99.9 | Minus |
CG1889-RA | 1468 | CG1889-RA | 206..1109 | 919..16 | 4509 | 99.9 | Minus |
CG1889-RE | 1227 | CG1889-RE | 206..1113 | 919..16 | 4459 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9965837..9966397 | 719..159 | 2805 | 100 | Minus |
X | 23542271 | X | 9965585..9965770 | 905..720 | 930 | 100 | Minus |
X | 23542271 | X | 9966458..9966600 | 158..16 | 715 | 100 | Minus |
Blast to na_te.dros performed 2015-02-01 08:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 139..189 | 549..599 | 111 | 68.6 | Plus |
BS07203.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:28 Download gff for
BS07203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-PA | 98..999 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:51 Download gff for
BS07203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-PA | 98..999 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:20:11 Download gff for
BS07203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RA | 207..1109 | 16..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:48:30 Download gff for
BS07203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RA | 207..1109 | 16..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:48:30 Download gff for
BS07203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9965582..9965770 | 720..909 | 98 | -> | Minus |
X | 9965837..9966397 | 159..719 | 100 | -> | Minus |
X | 9966458..9966600 | 16..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:20:11 Download gff for
BS07203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9859615..9859803 | 720..909 | 98 | -> | Minus |
arm_X | 9859870..9860430 | 159..719 | 100 | -> | Minus |
arm_X | 9860491..9860633 | 16..158 | 100 | | Minus |
BS07203.5prime Sequence
796 bp (769 high quality bases) assembled on 2006-01-06
> BS07203.5prime
GAAGTTATCAGTCGACATGTCACAGATGCTGCAGCTGGATGCCTTGGTCA
TGGCCATGGCCTGTCTATCCACCACACAAACGGATCTGGGCGGAGGACTG
TTGGTTCCGCCCTCCTTGGGAAATGCGAGTTCCAGCAGCTGTCCAGTTTC
GGCTTTAAGTGGTCTTACCACTCGAATGCAATCGCTGAACAACGAAATAG
CTAGTGTCAAGGAGCAGATAGGCAGTCTCCAGGAGCAGTTGGTGGATCTG
CGAAGAGCGGGAAGTGCACCGGTGGTGGGACTCGCTTCGCCCAATGCACT
GGCATCTCGATTCCTAGACATTGAGCCGCAACTCCTGGCCAACGGTGGTG
CAGCGGCCGTTCCAATCACTCCGGCAAACTGCCTGAAACAGCAGCACGGT
GTGGTGCGAATCAGACCCCGCTCGAACGTGGAACCGTTCTTTGTTTTTTG
CGATCAGAAGGTCAGAAACGGTGGTTGGACAATGGTAGTTAATCGTTATG
ATGGCAGTGAGGATTTCAATCGAAAGTGGGCGGATTACAAGATCGGTTTC
GGGCCACTAACCACCGAGTTCTTCATCGGATTGGATAAATTGCATCAGAT
TACGAGCAGTGACAACTATGAGCTTTTGGTTCAGCTGCAGAATCGAAAGC
AGGAGCTGAGATATGCCCTATATGATCACTTTAGCATCGGCAGTGAATCG
GAACAGTATCGTCTGAATGTCTTGGGGGATTATCACGGCGATGCTGCCGA
TGCATTGCGTGACCACACGGGAAAGAAATTCAGTACCCACGATAGG
BS07203.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1889-PA | 999 | CG1889-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
CG1889-PB | 726 | CG1889-RB | 24..507 | 313..796 | 2420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1889-RC | 1223 | CG1889-RC | 110..889 | 17..796 | 3900 | 100 | Plus |
CG1889-RA | 1468 | CG1889-RA | 110..889 | 17..796 | 3900 | 100 | Plus |
CG1889-RE | 1227 | CG1889-RE | 110..893 | 17..796 | 3850 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9965837..9966320 | 313..796 | 2420 | 100 | Plus |
X | 23542271 | X | 9965585..9965770 | 127..312 | 930 | 100 | Plus |
X | 23542271 | X | 9965350..9965460 | 17..127 | 555 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 06:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 139..189 | 483..433 | 111 | 68.6 | Minus |
BS07203.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:29 Download gff for
BS07203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:52 Download gff for
BS07203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:31 Download gff for
BS07203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RA | 110..889 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:24 Download gff for
BS07203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RA | 110..889 | 17..796 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:24 Download gff for
BS07203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9965350..9965460 | 17..127 | 100 | -> | Plus |
X | 9965586..9965770 | 128..312 | 100 | -> | Plus |
X | 9965837..9966320 | 313..796 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:31 Download gff for
BS07203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9859383..9859493 | 17..127 | 100 | -> | Plus |
arm_X | 9859619..9859803 | 128..312 | 100 | -> | Plus |
arm_X | 9859870..9860353 | 313..796 | 100 | | Plus |
BS07203.complete Sequence
1031 bp (1031 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635763
> BS07203.complete
GAAGTTATCAGTCGACATGTCACAGATGCTGCAGCTGGATGCCTTGGTCA
TGGCCATGGCCTGTCTATCCACCACACAAACGGATCTGGGCGGAGGACTG
TTGGTTCCGCCCTCCTTGGGAAATGCGAGTTCCAGCAGCTGTCCAGTTTC
GGCTTTAAGTGGTCTTACCACTCGAATGCAATCGCTGAACAACGAAATAG
CTAGTGTCAAGGAGCAGATAGGCAGTCTCCAGGAGCAGTTGGTGGATCTG
CGAAGAGCGGGAAGTGCACCGGTGGTGGGACTCGCTTCGCCCAATGCACT
GGCATCTCGATTCCTAGACATTGAGCCGCAACTCCTGGCCAACGGTGGTG
CAGCGGCCGTTCCAATCACTCCGGCAAACTGCCTGAAACAGCAGCACGGT
GTGGTGCGAATCAGACCCCGCTCGAACGTGGAACCGTTCTTTGTTTTTTG
CGATCAGAAGGTCAGAAACGGTGGTTGGACAATGGTAGTTAATCGTTATG
ATGGCAGTGAGGATTTCAATCGAAAGTGGGCGGATTACAAGATCGGTTTC
GGGCCACTAACCACCGAGTTCTTCATCGGATTGGATAAATTGCATCAGAT
TACGAGCAGTGACAACTATGAGCTTTTGGTTCAGCTGCAGAATCGAAAGC
AGGAGCTGAGATATGCCCTATATGATCACTTTAGCATCGGCAGTGAATCG
GAACAGTATCGTCTGAATGTCTTGGGGGATTATCACGGCGATGCTGCCGA
TGCATTGCGTGACCACACGGGAAAGAAATTCAGTACCCACGATAGGGTTA
ATGATGAAAATGAGCAAAACTGCGCGGCTCAGCAGTCGGGAGCTTTTTGG
TATGGCGGCTCTTGCAATCTCACCAACCCATTTGGCCTATATCAACGCCT
TCTAGAACGGGATGTTGATGGTTTCAAGGGCATTCTATGGCGCGGTTTCT
TAAATGGACCCAAAGGTTCCCTGAAAATAGTTCGCATGATGGTTCGTCCA
CGCGCCGCTTTATAAAAGCTTTCTAGACCAT
BS07203.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1889-RC | 999 | CG1889-PC | 1..999 | 17..1015 | 4995 | 100 | Plus |
CG1889-RA | 999 | CG1889-PA | 1..999 | 17..1015 | 4995 | 100 | Plus |
CG1889-RD | 1017 | CG1889-PD | 1..1017 | 17..1015 | 4780 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1889-RC | 1223 | CG1889-RC | 110..1109 | 17..1016 | 5000 | 100 | Plus |
CG1889-RA | 1468 | CG1889-RA | 110..1109 | 17..1016 | 5000 | 100 | Plus |
CG1889-RE | 1227 | CG1889-RE | 110..1113 | 17..1016 | 4925 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9965837..9966397 | 313..873 | 2805 | 100 | Plus |
X | 23542271 | X | 9965585..9965770 | 127..312 | 930 | 100 | Plus |
X | 23542271 | X | 9966458..9966600 | 874..1016 | 715 | 100 | Plus |
X | 23542271 | X | 9965350..9965460 | 17..127 | 555 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:16:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 139..189 | 483..433 | 111 | 68.6 | Minus |
BS07203.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:23 Download gff for
BS07203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RC | 1..999 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:50 Download gff for
BS07203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RC | 110..1109 | 17..1016 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:22 Download gff for
BS07203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RA | 110..1106 | 17..1013 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:23 Download gff for
BS07203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RC | 110..1109 | 17..1016 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:14 Download gff for
BS07203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1889-RA | 110..1106 | 17..1013 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:14 Download gff for
BS07203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9965350..9965460 | 17..127 | 100 | -> | Plus |
X | 9965586..9965770 | 128..312 | 100 | -> | Plus |
X | 9965837..9966397 | 313..873 | 100 | -> | Plus |
X | 9966458..9966597 | 874..1013 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:22 Download gff for
BS07203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9859383..9859493 | 17..127 | 100 | -> | Plus |
arm_X | 9859619..9859803 | 128..312 | 100 | -> | Plus |
arm_X | 9859870..9860430 | 313..873 | 100 | -> | Plus |
arm_X | 9860491..9860630 | 874..1013 | 100 | | Plus |
BS07203.pep Sequence
Translation from 16 to 1014
> BS07203.pep
MSQMLQLDALVMAMACLSTTQTDLGGGLLVPPSLGNASSSSCPVSALSGL
TTRMQSLNNEIASVKEQIGSLQEQLVDLRRAGSAPVVGLASPNALASRFL
DIEPQLLANGGAAAVPITPANCLKQQHGVVRIRPRSNVEPFFVFCDQKVR
NGGWTMVVNRYDGSEDFNRKWADYKIGFGPLTTEFFIGLDKLHQITSSDN
YELLVQLQNRKQELRYALYDHFSIGSESEQYRLNVLGDYHGDAADALRDH
TGKKFSTHDRVNDENEQNCAAQQSGAFWYGGSCNLTNPFGLYQRLLERDV
DGFKGILWRGFLNGPKGSLKIVRMMVRPRAAL*
BS07203.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1889-PC | 332 | CG1889-PC | 1..332 | 1..332 | 1731 | 100 | Plus |
CG1889-PA | 332 | CG1889-PA | 1..332 | 1..332 | 1731 | 100 | Plus |
CG1889-PD | 338 | CG1889-PD | 1..338 | 1..332 | 1714 | 98.2 | Plus |
CG1791-PC | 333 | CG1791-PC | 1..329 | 5..328 | 779 | 47.2 | Plus |
CG1791-PA | 334 | CG1791-PA | 1..330 | 5..328 | 773 | 47.2 | Plus |