Clone BS07203 Report

Search the DGRC for BS07203

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG1889-RA
Protein status:BS07203.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07203.3prime Sequence

919 bp (802 high quality bases) assembled on 2006-01-06

> BS07203.3prime
ATGGTCTAGAAAGCTTTTATAAAGCGGCGCGTGGACGAACCATCATGCGA
ACTATTTTCAGGGAACCTTTGGGTCCATTTAAGAAACCGCGCCATAGAAT
GCCCTTGAAACCATCAACATCCCGTTCTAGAAGGCGTTGATATAGGCCAA
ATGGGTTGGTGAGATTGCAAGAGCCGCCATACCAAAAAGCTCCCGACTGC
TGAGCCGCGCAGTTTTGCTCATTTTCATCATTAACCCTATCGTGGGTACT
GAATTTCTTTCCCGTGTGGTCACGCAATGCATCGGCAGCATCGCCGTGAT
AATCCCCCAAGACATTCAGACGATACTGTTCCGATTCACTGCCGATGCTA
AAGTGATCATATAGGGCATATCTCAGCTCCTGCTTTCGATTCTGCAGCTG
AACCAAAAGCTCATAGTTGTCACTGCTCGTAATCTGATGCAATTTATCCA
ATCCGATGAAGAACTCGGTGGTTAGTGGCCCGAAACCGATCTTGTAATCC
GCCCACTTTCGATTGAAATCCTCACTGCCATCATAACGATTAACTACCAT
TGTCCAACCACCGTTTCTGACCTTCTGATCGCAAAAAACAAAGAACGGTT
CCACGTTCGAGCGGGGTCTGATTCGCACCACACCGTGCTGCTGTTTCAGG
CAGTTTGCCGGAGTGATTGGAACGGCCGCTGCACCACCGTTGGCCAGGAG
TTGCGGCTCAATGTCTAGGAATCGAGATGCCAGTGCATTGGGCGAAGCGA
GTCCCACCACCGGTGCACTTCCCGCTCTTCGCAGATCCACCAACTGCTCC
TGGAGACTGCCTATCTGCTCCTTGACACTAGCTATTTCGTTGTTCAGCGA
TTGCATTCGAGTGGTAAGACCACTTAAAGCCGAAACTGGACAGCTGCTGG
AACTCGCATTTCCCANGGA

BS07203.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-PA 999 CG1889-RA 97..999 919..17 4496 99.8 Minus
CG1889-PB 726 CG1889-RB 24..726 719..17 3515 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-RC 1223 CG1889-RC 206..1109 919..16 4509 99.9 Minus
CG1889-RA 1468 CG1889-RA 206..1109 919..16 4509 99.9 Minus
CG1889-RE 1227 CG1889-RE 206..1113 919..16 4459 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9965837..9966397 719..159 2805 100 Minus
X 23542271 X 9965585..9965770 905..720 930 100 Minus
X 23542271 X 9966458..9966600 158..16 715 100 Minus
Blast to na_te.dros performed 2015-02-01 08:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Mar 610 Dwil\Mar MAR 610bp Derived from AF518731. 139..189 549..599 111 68.6 Plus

BS07203.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:28 Download gff for BS07203.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-PA 98..999 17..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:51 Download gff for BS07203.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-PA 98..999 17..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:20:11 Download gff for BS07203.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 207..1109 16..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:48:30 Download gff for BS07203.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 207..1109 16..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:48:30 Download gff for BS07203.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9965582..9965770 720..909 98 -> Minus
X 9965837..9966397 159..719 100 -> Minus
X 9966458..9966600 16..158 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:20:11 Download gff for BS07203.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9859615..9859803 720..909 98 -> Minus
arm_X 9859870..9860430 159..719 100 -> Minus
arm_X 9860491..9860633 16..158 100   Minus

BS07203.5prime Sequence

796 bp (769 high quality bases) assembled on 2006-01-06

> BS07203.5prime
GAAGTTATCAGTCGACATGTCACAGATGCTGCAGCTGGATGCCTTGGTCA
TGGCCATGGCCTGTCTATCCACCACACAAACGGATCTGGGCGGAGGACTG
TTGGTTCCGCCCTCCTTGGGAAATGCGAGTTCCAGCAGCTGTCCAGTTTC
GGCTTTAAGTGGTCTTACCACTCGAATGCAATCGCTGAACAACGAAATAG
CTAGTGTCAAGGAGCAGATAGGCAGTCTCCAGGAGCAGTTGGTGGATCTG
CGAAGAGCGGGAAGTGCACCGGTGGTGGGACTCGCTTCGCCCAATGCACT
GGCATCTCGATTCCTAGACATTGAGCCGCAACTCCTGGCCAACGGTGGTG
CAGCGGCCGTTCCAATCACTCCGGCAAACTGCCTGAAACAGCAGCACGGT
GTGGTGCGAATCAGACCCCGCTCGAACGTGGAACCGTTCTTTGTTTTTTG
CGATCAGAAGGTCAGAAACGGTGGTTGGACAATGGTAGTTAATCGTTATG
ATGGCAGTGAGGATTTCAATCGAAAGTGGGCGGATTACAAGATCGGTTTC
GGGCCACTAACCACCGAGTTCTTCATCGGATTGGATAAATTGCATCAGAT
TACGAGCAGTGACAACTATGAGCTTTTGGTTCAGCTGCAGAATCGAAAGC
AGGAGCTGAGATATGCCCTATATGATCACTTTAGCATCGGCAGTGAATCG
GAACAGTATCGTCTGAATGTCTTGGGGGATTATCACGGCGATGCTGCCGA
TGCATTGCGTGACCACACGGGAAAGAAATTCAGTACCCACGATAGG

BS07203.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-PA 999 CG1889-RA 1..780 17..796 3900 100 Plus
CG1889-PB 726 CG1889-RB 24..507 313..796 2420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-RC 1223 CG1889-RC 110..889 17..796 3900 100 Plus
CG1889-RA 1468 CG1889-RA 110..889 17..796 3900 100 Plus
CG1889-RE 1227 CG1889-RE 110..893 17..796 3850 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9965837..9966320 313..796 2420 100 Plus
X 23542271 X 9965585..9965770 127..312 930 100 Plus
X 23542271 X 9965350..9965460 17..127 555 100 Plus
Blast to na_te.dros performed 2015-02-12 06:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Mar 610 Dwil\Mar MAR 610bp Derived from AF518731. 139..189 483..433 111 68.6 Minus

BS07203.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:29 Download gff for BS07203.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-PA 1..780 17..796 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:52 Download gff for BS07203.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-PA 1..780 17..796 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:31 Download gff for BS07203.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 110..889 17..796 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:24 Download gff for BS07203.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 110..889 17..796 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:24 Download gff for BS07203.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9965350..9965460 17..127 100 -> Plus
X 9965586..9965770 128..312 100 -> Plus
X 9965837..9966320 313..796 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:31 Download gff for BS07203.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9859383..9859493 17..127 100 -> Plus
arm_X 9859619..9859803 128..312 100 -> Plus
arm_X 9859870..9860353 313..796 100   Plus

BS07203.complete Sequence

1031 bp (1031 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635763

> BS07203.complete
GAAGTTATCAGTCGACATGTCACAGATGCTGCAGCTGGATGCCTTGGTCA
TGGCCATGGCCTGTCTATCCACCACACAAACGGATCTGGGCGGAGGACTG
TTGGTTCCGCCCTCCTTGGGAAATGCGAGTTCCAGCAGCTGTCCAGTTTC
GGCTTTAAGTGGTCTTACCACTCGAATGCAATCGCTGAACAACGAAATAG
CTAGTGTCAAGGAGCAGATAGGCAGTCTCCAGGAGCAGTTGGTGGATCTG
CGAAGAGCGGGAAGTGCACCGGTGGTGGGACTCGCTTCGCCCAATGCACT
GGCATCTCGATTCCTAGACATTGAGCCGCAACTCCTGGCCAACGGTGGTG
CAGCGGCCGTTCCAATCACTCCGGCAAACTGCCTGAAACAGCAGCACGGT
GTGGTGCGAATCAGACCCCGCTCGAACGTGGAACCGTTCTTTGTTTTTTG
CGATCAGAAGGTCAGAAACGGTGGTTGGACAATGGTAGTTAATCGTTATG
ATGGCAGTGAGGATTTCAATCGAAAGTGGGCGGATTACAAGATCGGTTTC
GGGCCACTAACCACCGAGTTCTTCATCGGATTGGATAAATTGCATCAGAT
TACGAGCAGTGACAACTATGAGCTTTTGGTTCAGCTGCAGAATCGAAAGC
AGGAGCTGAGATATGCCCTATATGATCACTTTAGCATCGGCAGTGAATCG
GAACAGTATCGTCTGAATGTCTTGGGGGATTATCACGGCGATGCTGCCGA
TGCATTGCGTGACCACACGGGAAAGAAATTCAGTACCCACGATAGGGTTA
ATGATGAAAATGAGCAAAACTGCGCGGCTCAGCAGTCGGGAGCTTTTTGG
TATGGCGGCTCTTGCAATCTCACCAACCCATTTGGCCTATATCAACGCCT
TCTAGAACGGGATGTTGATGGTTTCAAGGGCATTCTATGGCGCGGTTTCT
TAAATGGACCCAAAGGTTCCCTGAAAATAGTTCGCATGATGGTTCGTCCA
CGCGCCGCTTTATAAAAGCTTTCTAGACCAT

BS07203.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-RC 999 CG1889-PC 1..999 17..1015 4995 100 Plus
CG1889-RA 999 CG1889-PA 1..999 17..1015 4995 100 Plus
CG1889-RD 1017 CG1889-PD 1..1017 17..1015 4780 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-RC 1223 CG1889-RC 110..1109 17..1016 5000 100 Plus
CG1889-RA 1468 CG1889-RA 110..1109 17..1016 5000 100 Plus
CG1889-RE 1227 CG1889-RE 110..1113 17..1016 4925 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9965837..9966397 313..873 2805 100 Plus
X 23542271 X 9965585..9965770 127..312 930 100 Plus
X 23542271 X 9966458..9966600 874..1016 715 100 Plus
X 23542271 X 9965350..9965460 17..127 555 100 Plus
Blast to na_te.dros performed 2014-11-27 14:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Mar 610 Dwil\Mar MAR 610bp Derived from AF518731. 139..189 483..433 111 68.6 Minus

BS07203.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:23 Download gff for BS07203.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RC 1..999 17..1015 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:50 Download gff for BS07203.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RC 110..1109 17..1016 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:22 Download gff for BS07203.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 110..1106 17..1013 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:23 Download gff for BS07203.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RC 110..1109 17..1016 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:14 Download gff for BS07203.complete
Subject Subject Range Query Range Percent Splice Strand
CG1889-RA 110..1106 17..1013 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:14 Download gff for BS07203.complete
Subject Subject Range Query Range Percent Splice Strand
X 9965350..9965460 17..127 100 -> Plus
X 9965586..9965770 128..312 100 -> Plus
X 9965837..9966397 313..873 100 -> Plus
X 9966458..9966597 874..1013 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:22 Download gff for BS07203.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9859383..9859493 17..127 100 -> Plus
arm_X 9859619..9859803 128..312 100 -> Plus
arm_X 9859870..9860430 313..873 100 -> Plus
arm_X 9860491..9860630 874..1013 100   Plus

BS07203.pep Sequence

Translation from 16 to 1014

> BS07203.pep
MSQMLQLDALVMAMACLSTTQTDLGGGLLVPPSLGNASSSSCPVSALSGL
TTRMQSLNNEIASVKEQIGSLQEQLVDLRRAGSAPVVGLASPNALASRFL
DIEPQLLANGGAAAVPITPANCLKQQHGVVRIRPRSNVEPFFVFCDQKVR
NGGWTMVVNRYDGSEDFNRKWADYKIGFGPLTTEFFIGLDKLHQITSSDN
YELLVQLQNRKQELRYALYDHFSIGSESEQYRLNVLGDYHGDAADALRDH
TGKKFSTHDRVNDENEQNCAAQQSGAFWYGGSCNLTNPFGLYQRLLERDV
DGFKGILWRGFLNGPKGSLKIVRMMVRPRAAL*

BS07203.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1889-PC 332 CG1889-PC 1..332 1..332 1731 100 Plus
CG1889-PA 332 CG1889-PA 1..332 1..332 1731 100 Plus
CG1889-PD 338 CG1889-PD 1..338 1..332 1714 98.2 Plus
CG1791-PC 333 CG1791-PC 1..329 5..328 779 47.2 Plus
CG1791-PA 334 CG1791-PA 1..330 5..328 773 47.2 Plus