Clone Sequence Records
BS07204.3prime Sequence
946 bp (770 high quality bases) assembled on 2006-01-06
> BS07204.3prime
ATGGTCTAGAAAGCTTCTACGCCAGCCAGTTCATTAGGCTGTTGGCATAG
GCCATGGGCTTGACGTCGGGATGTGGCACAGCCTCGAATGATTTGTAATT
TGGTTTCAAATTGTTACCCGTAATGGTAATAAATGCGCCCATGTTGCCCA
TAGTATCACAATAGTTCGGAGCAGAGAAGACTGTTATGCATTTACCGTTG
TGAGCCACTTCATAGCCCATATCCTTAACCTCGTGGCTTCGAATGATGTA
GTCCAGGTTGTTGTCTTTGCAGAATTTCTCGGTAACATCCGGACCAAACT
GGATGCCCACGCCTCGCTTCGACTGACCGAGACCCATCCACTGCTGAGGA
TCGGACCACAGCAACTCGCACATAAGACCTTCCTCGGGCGGCTGGCAATT
TCGTTCGATGCGTCTTATATGGTCCAGAGTCACGTCTTCCGTGGAGAAGA
GCCCGCCGTGCATGACCAGGATCTTTTGGTTGATGCAGTGGCACAACGGC
AGCCAGTTGAAAACTTGCGTGAATATGTCAGCCATGGCGCTGGTGTACTT
CGCTGTCACCTCGCCAGTGAATCCATACATTTGGTTCATGTTAATGCTTT
CATGGTTGCCGCGCGCCAAGAAGAAGTGATTAGGATACAACAGCTTGAAA
CCAAACAGCGTAAATATACACTCCACAGAGAAGGAACCCCTGTCAACGAA
ATCGCCGTTGAACAGGTAGGGATTCTTTTCAGAGGGCAGACCATTGATCT
CGAATATGTTCATCAAGTCGTAGAATTGACCGTGAATGTCGCCACAAATC
GTGAACTTCTCCTCATCCGGCACAGTGATATCCACCAGCGAGGGCTGAGC
TCGCATATACGTGTCGATCTCGCAGAGTATTTTGTAGGCAAATTTGCGGT
GNCATCGCTTCTGTGCCTTTGTATGCTCCATCAATTCCTTCATGAA
BS07204.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8402-PB | 1563 | PpD3-RB | 661..1563 | 919..17 | 4471 | 99.7 | Minus |
CG8402-PA | 1563 | PpD3-RA | 661..1563 | 919..17 | 4471 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PpD3-RC | 2404 | CG8402-RC | 725..1654 | 946..17 | 4579 | 99.6 | Minus |
PpD3-RA | 2509 | CG8402-RA | 830..1759 | 946..17 | 4579 | 99.6 | Minus |
PpD3-RB | 2374 | CG8402-RB | 695..1624 | 946..17 | 4579 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9749640..9750091 | 610..159 | 2260 | 100 | Minus |
3R | 32079331 | 3R | 9749306..9749577 | 880..609 | 1360 | 100 | Minus |
3R | 32079331 | 3R | 9750147..9750229 | 159..77 | 415 | 100 | Minus |
3R | 32079331 | 3R | 9750284..9750344 | 77..17 | 305 | 100 | Minus |
3R | 32079331 | 3R | 9749182..9749247 | 946..881 | 259 | 92.4 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:59:10 has no hits.
BS07204.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:30 Download gff for
BS07204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpD3-PA | 636..1563 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:54 Download gff for
BS07204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8402-PA | 636..1563 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:40:00 Download gff for
BS07204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpD3-RB | 695..1632 | 9..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:48:50 Download gff for
BS07204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpD3-RB | 695..1632 | 9..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:48:50 Download gff for
BS07204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9750285..9750352 | 9..76 | 95 | | Minus |
3R | 9749182..9749247 | 881..946 | 94 | -> | Minus |
3R | 9749306..9749576 | 610..880 | 100 | -> | Minus |
3R | 9749641..9750091 | 159..609 | 100 | -> | Minus |
3R | 9750148..9750229 | 77..158 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:40:00 Download gff for
BS07204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5574904..5574969 | 881..946 | 94 | -> | Minus |
arm_3R | 5575028..5575298 | 610..880 | 100 | -> | Minus |
arm_3R | 5575363..5575813 | 159..609 | 100 | -> | Minus |
arm_3R | 5575870..5575951 | 77..158 | 100 | -> | Minus |
arm_3R | 5576007..5576074 | 9..76 | 95 | | Minus |
BS07204.5prime Sequence
883 bp (846 high quality bases) assembled on 2006-01-06
> BS07204.5prime
GAAGTTATCAGTCGACATGTCTTCGTCCGAACTGGAAGTACAGAAGGCTG
CTGATTGTCAGCAGGAGGCGAAGGTGCCGGCAAGCGTGGAGATTACGGGG
TCCAAGCAGCCGGAGGAGGACACAAATGCCCGTACGAAGGCGGAACTCGA
TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAA
CCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTG
CACCCCAACAGCGCGATATATTACGCCAACCGATCCTTGGCGCACTTGCG
CCAGGAGAGCTTTGGTTTCGCACTACAGGATGGTGTTTCGGCGGTAAAGG
CGGATCCTGCCTACCTTAAGGGTTACTATCGCCGGGCAGCGGCTCACATG
TCTCTGGGGAAGTTCAAGCAAGCCCTTTGTGACTTTGAATTCGTAGCCAA
GTGCCGGCCGAACGACAAAGACGCCAAGCTTAAGTTTACCGAGTGCAACA
AAATTGTCAAAATGCGCGCCTTCGAACGGGCCATTGCTGTGGATAAGCCC
GAGAAGACGCTCTCAGAGATGTACAGCGACATGGAAAACATAACTATTGA
GGATGACTACAAGGGTCCGCAGCTGGAAGACGGCAAGGTGACTCTAAAGT
TCATGAAGGAATTGATGGAGCATTACAAGGCACAGAAGCGATTGCACCGC
AAATTTGCCTACAAAATACTCTGCGAGATCGACACGTATATGCGAGCTCA
GCCCTCGCTGGTGGATATCACTGTGCCGGATGAGGAGAAGTTCACGATTT
GTGGCGACATTCACGGTCAATTCTACGACTTGATGAACATATTCGAGATC
AATGGTCTGCCCTCTGAAAAGAATCCCTACCTG
BS07204.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8402-PB | 1563 | PpD3-RB | 1..867 | 17..883 | 4335 | 100 | Plus |
CG8402-PA | 1563 | PpD3-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PpD3-RC | 2404 | CG8402-RC | 92..958 | 17..883 | 4335 | 100 | Plus |
PpD3-RA | 2509 | CG8402-RA | 197..1063 | 17..883 | 4335 | 100 | Plus |
PpD3-RB | 2374 | CG8402-RB | 62..928 | 17..883 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9748612..9748856 | 201..445 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 9748218..9748401 | 17..200 | 920 | 100 | Plus |
3R | 32079331 | 3R | 9749306..9749473 | 716..883 | 840 | 100 | Plus |
3R | 32079331 | 3R | 9748910..9749060 | 443..593 | 755 | 100 | Plus |
3R | 32079331 | 3R | 9749126..9749247 | 594..715 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:27:08 has no hits.
BS07204.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:31 Download gff for
BS07204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpD3-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:55 Download gff for
BS07204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8402-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:11 Download gff for
BS07204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpD3-RB | 62..928 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:11 Download gff for
BS07204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpD3-RB | 62..928 | 17..883 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:11 Download gff for
BS07204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9748218..9748401 | 17..200 | 100 | -> | Plus |
3R | 9748612..9748853 | 201..442 | 100 | -> | Plus |
3R | 9748910..9749060 | 443..593 | 100 | -> | Plus |
3R | 9749126..9749247 | 594..715 | 100 | -> | Plus |
3R | 9749306..9749473 | 716..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:11 Download gff for
BS07204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5573940..5574123 | 17..200 | 100 | -> | Plus |
arm_3R | 5574334..5574575 | 201..442 | 100 | -> | Plus |
arm_3R | 5574632..5574782 | 443..593 | 100 | -> | Plus |
arm_3R | 5574848..5574969 | 594..715 | 100 | -> | Plus |
arm_3R | 5575028..5575195 | 716..883 | 100 | | Plus |
BS07204.complete Sequence
1595 bp (1595 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635764
> BS07204.complete
GAAGTTATCAGTCGACATGTCTTCGTCCGAACTGGAAGTACAGAAGGCTG
CTGATTGTCAGCAGGAGGCGAAGGTGCCGGCAAGCGTGGAGATTACGGGG
TCCAAGCAGCCGGAGGAGGACACAAATGCCCGTACGAAGGCGGAACTCGA
TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAA
CCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTG
CACCCCAACAGCGCGATATATTACGCCAACCGATCCTTGGCGCACTTGCG
CCAGGAGAGCTTTGGTTTCGCACTACAGGATGGTGTTTCGGCGGTAAAGG
CGGATCCTGCCTACCTTAAGGGTTACTATCGCCGGGCAGCGGCTCACATG
TCTCTGGGGAAGTTCAAGCAAGCCCTTTGTGACTTTGAATTCGTAGCCAA
GTGCCGGCCGAACGACAAAGACGCCAAGCTTAAGTTTACCGAGTGCAACA
AAATTGTCAAAATGCGCGCCTTCGAACGGGCCATTGCTGTGGATAAGCCC
GAGAAGACGCTCTCAGAGATGTACAGCGACATGGAAAACATAACTATTGA
GGATGACTACAAGGGTCCGCAGCTGGAAGACGGCAAGGTGACTCTAAAGT
TCATGAAGGAATTGATGGAGCATTACAAGGCACAGAAGCGATTGCACCGC
AAATTTGCCTACAAAATACTCTGCGAGATCGACACGTATATGCGAGCTCA
GCCCTCGCTGGTGGATATCACTGTGCCGGATGAGGAGAAGTTCACGATTT
GTGGCGACATTCACGGTCAATTCTACGACTTGATGAACATATTCGAGATC
AATGGTCTGCCCTCTGAAAAGAATCCCTACCTGTTCAACGGCGATTTCGT
TGACAGGGGTTCCTTCTCTGTGGAGTGTATATTTACGCTGTTTGGTTTCA
AGCTGTTGTATCCTAATCACTTCTTCTTGGCGCGCGGCAACCATGAAAGC
ATTAACATGAACCAAATGTATGGATTCACTGGCGAGGTGACAGCGAAGTA
CACCAGCGCCATGGCTGACATATTCACGCAAGTTTTCAACTGGCTGCCGT
TGTGCCACTGCATCAACCAAAAGATCCTGGTCATGCACGGCGGGCTCTTC
TCCACGGAAGACGTGACTCTGGACCATATAAGACGCATCGAACGAAATTG
CCAGCCGCCCGAGGAAGGTCTTATGTGCGAGTTGCTGTGGTCCGATCCTC
AGCAGTGGATGGGTCTCGGTCAGTCGAAGCGAGGCGTGGGCATCCAGTTT
GGTCCGGATGTTACCGAGAAATTCTGCAAAGACAACAACCTGGACTACAT
CATTCGAAGCCACGAGGTTAAGGATATGGGCTATGAAGTGGCTCACAACG
GTAAATGCATAACAGTCTTCTCTGCTCCGAACTATTGTGATACTATGGGC
AACATGGGCGCATTTATTACCATTACGGGTAACAATTTGAAACCAAATTA
CAAATCATTCGAGGCTGTGCCACATCCCGACGTCAAGCCCATGGCCTATG
CCAACAGCCTAATGAACTGGCTGGCGTAGAAGCTTTCTAGACCAT
BS07204.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PpD3-RC | 1563 | CG8402-PC | 1..1563 | 17..1579 | 7815 | 100 | Plus |
PpD3-RA | 1563 | CG8402-PA | 1..1563 | 17..1579 | 7815 | 100 | Plus |
PpD3-RB | 1563 | CG8402-PB | 1..1563 | 17..1579 | 7815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PpD3-RC | 2404 | CG8402-RC | 92..1654 | 17..1579 | 7815 | 100 | Plus |
PpD3-RA | 2509 | CG8402-RA | 197..1759 | 17..1579 | 7815 | 100 | Plus |
PpD3-RB | 2374 | CG8402-RB | 62..1624 | 17..1579 | 7815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:25:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9749640..9750091 | 986..1437 | 2260 | 100 | Plus |
3R | 32079331 | 3R | 9749306..9749577 | 716..987 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 9748612..9748856 | 201..445 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 9748218..9748401 | 17..200 | 920 | 100 | Plus |
3R | 32079331 | 3R | 9748910..9749060 | 443..593 | 755 | 100 | Plus |
3R | 32079331 | 3R | 9749126..9749247 | 594..715 | 610 | 100 | Plus |
3R | 32079331 | 3R | 9750147..9750229 | 1437..1519 | 415 | 100 | Plus |
3R | 32079331 | 3R | 9750284..9750344 | 1519..1579 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:25:16 has no hits.
BS07204.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:06 Download gff for
BS07204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpD3-RA | 1..1563 | 17..1579 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:30 Download gff for
BS07204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpD3-RA | 197..1767 | 17..1587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:39:56 Download gff for
BS07204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpD3-RB | 62..1624 | 17..1579 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:07 Download gff for
BS07204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpD3-RA | 197..1767 | 17..1587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:06 Download gff for
BS07204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PpD3-RB | 62..1624 | 17..1579 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:06 Download gff for
BS07204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9748218..9748401 | 17..200 | 100 | -> | Plus |
3R | 9748612..9748853 | 201..442 | 100 | -> | Plus |
3R | 9748910..9749060 | 443..593 | 100 | -> | Plus |
3R | 9749126..9749247 | 594..715 | 100 | -> | Plus |
3R | 9749306..9749576 | 716..986 | 100 | -> | Plus |
3R | 9749641..9750091 | 987..1437 | 100 | -> | Plus |
3R | 9750148..9750229 | 1438..1519 | 100 | -> | Plus |
3R | 9750285..9750344 | 1520..1579 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:39:56 Download gff for
BS07204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5573940..5574123 | 17..200 | 100 | -> | Plus |
arm_3R | 5574334..5574575 | 201..442 | 100 | -> | Plus |
arm_3R | 5574632..5574782 | 443..593 | 100 | -> | Plus |
arm_3R | 5574848..5574969 | 594..715 | 100 | -> | Plus |
arm_3R | 5575028..5575298 | 716..986 | 100 | -> | Plus |
arm_3R | 5575363..5575813 | 987..1437 | 100 | -> | Plus |
arm_3R | 5575870..5575951 | 1438..1519 | 100 | -> | Plus |
arm_3R | 5576007..5576066 | 1520..1579 | 100 | | Plus |
BS07204.pep Sequence
Translation from 16 to 1578
> BS07204.pep
MSSSELEVQKAADCQQEAKVPASVEITGSKQPEEDTNARTKAELDFAAAE
QYKNQGNEMLKTKEFSKAIDMYTKAIELHPNSAIYYANRSLAHLRQESFG
FALQDGVSAVKADPAYLKGYYRRAAAHMSLGKFKQALCDFEFVAKCRPND
KDAKLKFTECNKIVKMRAFERAIAVDKPEKTLSEMYSDMENITIEDDYKG
PQLEDGKVTLKFMKELMEHYKAQKRLHRKFAYKILCEIDTYMRAQPSLVD
ITVPDEEKFTICGDIHGQFYDLMNIFEINGLPSEKNPYLFNGDFVDRGSF
SVECIFTLFGFKLLYPNHFFLARGNHESINMNQMYGFTGEVTAKYTSAMA
DIFTQVFNWLPLCHCINQKILVMHGGLFSTEDVTLDHIRRIERNCQPPEE
GLMCELLWSDPQQWMGLGQSKRGVGIQFGPDVTEKFCKDNNLDYIIRSHE
VKDMGYEVAHNGKCITVFSAPNYCDTMGNMGAFITITGNNLKPNYKSFEA
VPHPDVKPMAYANSLMNWLA*
BS07204.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PpD3-PC | 520 | CG8402-PC | 1..520 | 1..520 | 2774 | 100 | Plus |
PpD3-PA | 520 | CG8402-PA | 1..520 | 1..520 | 2774 | 100 | Plus |
PpD3-PB | 520 | CG8402-PB | 1..520 | 1..520 | 2774 | 100 | Plus |
Pp1-13C-PA | 302 | CG9156-PA | 46..283 | 244..486 | 554 | 45.1 | Plus |
Pp1alpha-96A-PB | 327 | CG6593-PB | 46..306 | 244..513 | 554 | 42.1 | Plus |