Clone BS07204 Report

Search the DGRC for BS07204

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptPpD3-RA
Protein status:BS07204.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07204.3prime Sequence

946 bp (770 high quality bases) assembled on 2006-01-06

> BS07204.3prime
ATGGTCTAGAAAGCTTCTACGCCAGCCAGTTCATTAGGCTGTTGGCATAG
GCCATGGGCTTGACGTCGGGATGTGGCACAGCCTCGAATGATTTGTAATT
TGGTTTCAAATTGTTACCCGTAATGGTAATAAATGCGCCCATGTTGCCCA
TAGTATCACAATAGTTCGGAGCAGAGAAGACTGTTATGCATTTACCGTTG
TGAGCCACTTCATAGCCCATATCCTTAACCTCGTGGCTTCGAATGATGTA
GTCCAGGTTGTTGTCTTTGCAGAATTTCTCGGTAACATCCGGACCAAACT
GGATGCCCACGCCTCGCTTCGACTGACCGAGACCCATCCACTGCTGAGGA
TCGGACCACAGCAACTCGCACATAAGACCTTCCTCGGGCGGCTGGCAATT
TCGTTCGATGCGTCTTATATGGTCCAGAGTCACGTCTTCCGTGGAGAAGA
GCCCGCCGTGCATGACCAGGATCTTTTGGTTGATGCAGTGGCACAACGGC
AGCCAGTTGAAAACTTGCGTGAATATGTCAGCCATGGCGCTGGTGTACTT
CGCTGTCACCTCGCCAGTGAATCCATACATTTGGTTCATGTTAATGCTTT
CATGGTTGCCGCGCGCCAAGAAGAAGTGATTAGGATACAACAGCTTGAAA
CCAAACAGCGTAAATATACACTCCACAGAGAAGGAACCCCTGTCAACGAA
ATCGCCGTTGAACAGGTAGGGATTCTTTTCAGAGGGCAGACCATTGATCT
CGAATATGTTCATCAAGTCGTAGAATTGACCGTGAATGTCGCCACAAATC
GTGAACTTCTCCTCATCCGGCACAGTGATATCCACCAGCGAGGGCTGAGC
TCGCATATACGTGTCGATCTCGCAGAGTATTTTGTAGGCAAATTTGCGGT
GNCATCGCTTCTGTGCCTTTGTATGCTCCATCAATTCCTTCATGAA

BS07204.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8402-PB 1563 PpD3-RB 661..1563 919..17 4471 99.7 Minus
CG8402-PA 1563 PpD3-RA 661..1563 919..17 4471 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
PpD3-RC 2404 CG8402-RC 725..1654 946..17 4579 99.6 Minus
PpD3-RA 2509 CG8402-RA 830..1759 946..17 4579 99.6 Minus
PpD3-RB 2374 CG8402-RB 695..1624 946..17 4579 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9749640..9750091 610..159 2260 100 Minus
3R 32079331 3R 9749306..9749577 880..609 1360 100 Minus
3R 32079331 3R 9750147..9750229 159..77 415 100 Minus
3R 32079331 3R 9750284..9750344 77..17 305 100 Minus
3R 32079331 3R 9749182..9749247 946..881 259 92.4 Minus
Blast to na_te.dros performed on 2015-02-06 11:59:10 has no hits.

BS07204.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:30 Download gff for BS07204.3prime
Subject Subject Range Query Range Percent Splice Strand
PpD3-PA 636..1563 17..944 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:54 Download gff for BS07204.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8402-PA 636..1563 17..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:40:00 Download gff for BS07204.3prime
Subject Subject Range Query Range Percent Splice Strand
PpD3-RB 695..1632 9..946 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:48:50 Download gff for BS07204.3prime
Subject Subject Range Query Range Percent Splice Strand
PpD3-RB 695..1632 9..946 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:48:50 Download gff for BS07204.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9750285..9750352 9..76 95   Minus
3R 9749182..9749247 881..946 94 -> Minus
3R 9749306..9749576 610..880 100 -> Minus
3R 9749641..9750091 159..609 100 -> Minus
3R 9750148..9750229 77..158 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:40:00 Download gff for BS07204.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5574904..5574969 881..946 94 -> Minus
arm_3R 5575028..5575298 610..880 100 -> Minus
arm_3R 5575363..5575813 159..609 100 -> Minus
arm_3R 5575870..5575951 77..158 100 -> Minus
arm_3R 5576007..5576074 9..76 95   Minus

BS07204.5prime Sequence

883 bp (846 high quality bases) assembled on 2006-01-06

> BS07204.5prime
GAAGTTATCAGTCGACATGTCTTCGTCCGAACTGGAAGTACAGAAGGCTG
CTGATTGTCAGCAGGAGGCGAAGGTGCCGGCAAGCGTGGAGATTACGGGG
TCCAAGCAGCCGGAGGAGGACACAAATGCCCGTACGAAGGCGGAACTCGA
TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAA
CCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTG
CACCCCAACAGCGCGATATATTACGCCAACCGATCCTTGGCGCACTTGCG
CCAGGAGAGCTTTGGTTTCGCACTACAGGATGGTGTTTCGGCGGTAAAGG
CGGATCCTGCCTACCTTAAGGGTTACTATCGCCGGGCAGCGGCTCACATG
TCTCTGGGGAAGTTCAAGCAAGCCCTTTGTGACTTTGAATTCGTAGCCAA
GTGCCGGCCGAACGACAAAGACGCCAAGCTTAAGTTTACCGAGTGCAACA
AAATTGTCAAAATGCGCGCCTTCGAACGGGCCATTGCTGTGGATAAGCCC
GAGAAGACGCTCTCAGAGATGTACAGCGACATGGAAAACATAACTATTGA
GGATGACTACAAGGGTCCGCAGCTGGAAGACGGCAAGGTGACTCTAAAGT
TCATGAAGGAATTGATGGAGCATTACAAGGCACAGAAGCGATTGCACCGC
AAATTTGCCTACAAAATACTCTGCGAGATCGACACGTATATGCGAGCTCA
GCCCTCGCTGGTGGATATCACTGTGCCGGATGAGGAGAAGTTCACGATTT
GTGGCGACATTCACGGTCAATTCTACGACTTGATGAACATATTCGAGATC
AATGGTCTGCCCTCTGAAAAGAATCCCTACCTG

BS07204.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8402-PB 1563 PpD3-RB 1..867 17..883 4335 100 Plus
CG8402-PA 1563 PpD3-RA 1..867 17..883 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
PpD3-RC 2404 CG8402-RC 92..958 17..883 4335 100 Plus
PpD3-RA 2509 CG8402-RA 197..1063 17..883 4335 100 Plus
PpD3-RB 2374 CG8402-RB 62..928 17..883 4335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9748612..9748856 201..445 1225 100 Plus
3R 32079331 3R 9748218..9748401 17..200 920 100 Plus
3R 32079331 3R 9749306..9749473 716..883 840 100 Plus
3R 32079331 3R 9748910..9749060 443..593 755 100 Plus
3R 32079331 3R 9749126..9749247 594..715 610 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:27:08 has no hits.

BS07204.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:31 Download gff for BS07204.5prime
Subject Subject Range Query Range Percent Splice Strand
PpD3-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:55 Download gff for BS07204.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8402-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:11 Download gff for BS07204.5prime
Subject Subject Range Query Range Percent Splice Strand
PpD3-RB 62..928 17..883 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:11 Download gff for BS07204.5prime
Subject Subject Range Query Range Percent Splice Strand
PpD3-RB 62..928 17..883 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:11 Download gff for BS07204.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9748218..9748401 17..200 100 -> Plus
3R 9748612..9748853 201..442 100 -> Plus
3R 9748910..9749060 443..593 100 -> Plus
3R 9749126..9749247 594..715 100 -> Plus
3R 9749306..9749473 716..883 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:11 Download gff for BS07204.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5573940..5574123 17..200 100 -> Plus
arm_3R 5574334..5574575 201..442 100 -> Plus
arm_3R 5574632..5574782 443..593 100 -> Plus
arm_3R 5574848..5574969 594..715 100 -> Plus
arm_3R 5575028..5575195 716..883 100   Plus

BS07204.complete Sequence

1595 bp (1595 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635764

> BS07204.complete
GAAGTTATCAGTCGACATGTCTTCGTCCGAACTGGAAGTACAGAAGGCTG
CTGATTGTCAGCAGGAGGCGAAGGTGCCGGCAAGCGTGGAGATTACGGGG
TCCAAGCAGCCGGAGGAGGACACAAATGCCCGTACGAAGGCGGAACTCGA
TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAA
CCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTG
CACCCCAACAGCGCGATATATTACGCCAACCGATCCTTGGCGCACTTGCG
CCAGGAGAGCTTTGGTTTCGCACTACAGGATGGTGTTTCGGCGGTAAAGG
CGGATCCTGCCTACCTTAAGGGTTACTATCGCCGGGCAGCGGCTCACATG
TCTCTGGGGAAGTTCAAGCAAGCCCTTTGTGACTTTGAATTCGTAGCCAA
GTGCCGGCCGAACGACAAAGACGCCAAGCTTAAGTTTACCGAGTGCAACA
AAATTGTCAAAATGCGCGCCTTCGAACGGGCCATTGCTGTGGATAAGCCC
GAGAAGACGCTCTCAGAGATGTACAGCGACATGGAAAACATAACTATTGA
GGATGACTACAAGGGTCCGCAGCTGGAAGACGGCAAGGTGACTCTAAAGT
TCATGAAGGAATTGATGGAGCATTACAAGGCACAGAAGCGATTGCACCGC
AAATTTGCCTACAAAATACTCTGCGAGATCGACACGTATATGCGAGCTCA
GCCCTCGCTGGTGGATATCACTGTGCCGGATGAGGAGAAGTTCACGATTT
GTGGCGACATTCACGGTCAATTCTACGACTTGATGAACATATTCGAGATC
AATGGTCTGCCCTCTGAAAAGAATCCCTACCTGTTCAACGGCGATTTCGT
TGACAGGGGTTCCTTCTCTGTGGAGTGTATATTTACGCTGTTTGGTTTCA
AGCTGTTGTATCCTAATCACTTCTTCTTGGCGCGCGGCAACCATGAAAGC
ATTAACATGAACCAAATGTATGGATTCACTGGCGAGGTGACAGCGAAGTA
CACCAGCGCCATGGCTGACATATTCACGCAAGTTTTCAACTGGCTGCCGT
TGTGCCACTGCATCAACCAAAAGATCCTGGTCATGCACGGCGGGCTCTTC
TCCACGGAAGACGTGACTCTGGACCATATAAGACGCATCGAACGAAATTG
CCAGCCGCCCGAGGAAGGTCTTATGTGCGAGTTGCTGTGGTCCGATCCTC
AGCAGTGGATGGGTCTCGGTCAGTCGAAGCGAGGCGTGGGCATCCAGTTT
GGTCCGGATGTTACCGAGAAATTCTGCAAAGACAACAACCTGGACTACAT
CATTCGAAGCCACGAGGTTAAGGATATGGGCTATGAAGTGGCTCACAACG
GTAAATGCATAACAGTCTTCTCTGCTCCGAACTATTGTGATACTATGGGC
AACATGGGCGCATTTATTACCATTACGGGTAACAATTTGAAACCAAATTA
CAAATCATTCGAGGCTGTGCCACATCCCGACGTCAAGCCCATGGCCTATG
CCAACAGCCTAATGAACTGGCTGGCGTAGAAGCTTTCTAGACCAT

BS07204.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
PpD3-RC 1563 CG8402-PC 1..1563 17..1579 7815 100 Plus
PpD3-RA 1563 CG8402-PA 1..1563 17..1579 7815 100 Plus
PpD3-RB 1563 CG8402-PB 1..1563 17..1579 7815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
PpD3-RC 2404 CG8402-RC 92..1654 17..1579 7815 100 Plus
PpD3-RA 2509 CG8402-RA 197..1759 17..1579 7815 100 Plus
PpD3-RB 2374 CG8402-RB 62..1624 17..1579 7815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9749640..9750091 986..1437 2260 100 Plus
3R 32079331 3R 9749306..9749577 716..987 1360 100 Plus
3R 32079331 3R 9748612..9748856 201..445 1225 100 Plus
3R 32079331 3R 9748218..9748401 17..200 920 100 Plus
3R 32079331 3R 9748910..9749060 443..593 755 100 Plus
3R 32079331 3R 9749126..9749247 594..715 610 100 Plus
3R 32079331 3R 9750147..9750229 1437..1519 415 100 Plus
3R 32079331 3R 9750284..9750344 1519..1579 305 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:25:16 has no hits.

BS07204.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:06 Download gff for BS07204.complete
Subject Subject Range Query Range Percent Splice Strand
PpD3-RA 1..1563 17..1579 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:30 Download gff for BS07204.complete
Subject Subject Range Query Range Percent Splice Strand
PpD3-RA 197..1767 17..1587 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:39:56 Download gff for BS07204.complete
Subject Subject Range Query Range Percent Splice Strand
PpD3-RB 62..1624 17..1579 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:07 Download gff for BS07204.complete
Subject Subject Range Query Range Percent Splice Strand
PpD3-RA 197..1767 17..1587 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:06 Download gff for BS07204.complete
Subject Subject Range Query Range Percent Splice Strand
PpD3-RB 62..1624 17..1579 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:06 Download gff for BS07204.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9748218..9748401 17..200 100 -> Plus
3R 9748612..9748853 201..442 100 -> Plus
3R 9748910..9749060 443..593 100 -> Plus
3R 9749126..9749247 594..715 100 -> Plus
3R 9749306..9749576 716..986 100 -> Plus
3R 9749641..9750091 987..1437 100 -> Plus
3R 9750148..9750229 1438..1519 100 -> Plus
3R 9750285..9750344 1520..1579 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:39:56 Download gff for BS07204.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5573940..5574123 17..200 100 -> Plus
arm_3R 5574334..5574575 201..442 100 -> Plus
arm_3R 5574632..5574782 443..593 100 -> Plus
arm_3R 5574848..5574969 594..715 100 -> Plus
arm_3R 5575028..5575298 716..986 100 -> Plus
arm_3R 5575363..5575813 987..1437 100 -> Plus
arm_3R 5575870..5575951 1438..1519 100 -> Plus
arm_3R 5576007..5576066 1520..1579 100   Plus

BS07204.pep Sequence

Translation from 16 to 1578

> BS07204.pep
MSSSELEVQKAADCQQEAKVPASVEITGSKQPEEDTNARTKAELDFAAAE
QYKNQGNEMLKTKEFSKAIDMYTKAIELHPNSAIYYANRSLAHLRQESFG
FALQDGVSAVKADPAYLKGYYRRAAAHMSLGKFKQALCDFEFVAKCRPND
KDAKLKFTECNKIVKMRAFERAIAVDKPEKTLSEMYSDMENITIEDDYKG
PQLEDGKVTLKFMKELMEHYKAQKRLHRKFAYKILCEIDTYMRAQPSLVD
ITVPDEEKFTICGDIHGQFYDLMNIFEINGLPSEKNPYLFNGDFVDRGSF
SVECIFTLFGFKLLYPNHFFLARGNHESINMNQMYGFTGEVTAKYTSAMA
DIFTQVFNWLPLCHCINQKILVMHGGLFSTEDVTLDHIRRIERNCQPPEE
GLMCELLWSDPQQWMGLGQSKRGVGIQFGPDVTEKFCKDNNLDYIIRSHE
VKDMGYEVAHNGKCITVFSAPNYCDTMGNMGAFITITGNNLKPNYKSFEA
VPHPDVKPMAYANSLMNWLA*

BS07204.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
PpD3-PC 520 CG8402-PC 1..520 1..520 2774 100 Plus
PpD3-PA 520 CG8402-PA 1..520 1..520 2774 100 Plus
PpD3-PB 520 CG8402-PB 1..520 1..520 2774 100 Plus
Pp1-13C-PA 302 CG9156-PA 46..283 244..486 554 45.1 Plus
Pp1alpha-96A-PB 327 CG6593-PB 46..306 244..513 554 42.1 Plus