Clone Sequence Records
BS07205.3prime Sequence
911 bp (820 high quality bases) assembled on 2006-01-06
> BS07205.3prime
ATGGTCTAGAAAGCTTCTACTCCACGGTCACCGACTTGGCCAGGTTCCTG
GGGCAGTCCACGTCGCAGCCGCGGAGCACGGCGATGTGGTAGGACAGCAG
CTGGAGCGGAATCACCGTGAGCACGCCCTGCAGGCAGTCCACGGTCCTCG
GGATCTGCAGCGAACGCGTGGAGAAGGACATGGTCTCGTTGTCGCCCTCC
TCGCAGATTAGGATCGGTCTGCCCTTGCGGGACGTCACCTGCTGCAGTGC
ATTCATGCACTTGGTGTACACCGGATCCCGCAGCACGATCATCAGCACGG
GCATCTCCTTGTCCACCAGGGCCAGTGGTCCGTGTTTCAGTTCTCCAGCC
AGGATTCCTTCGCTGTGCATGTACGTCAGCTCCTTGACTTTCAGTGCGCC
CTCCAAACAGGTGGCGAAGTTGAAGCCCCTGCCCATAATGAGCAGCGACT
TGTGCTCGTACAACTCCTTGGCAAGCTGCTGCACCTGCGAGTTCAGCTTG
AGGACAGTCCTAATGTGCTCGTCCAGCTGCGATAGGCCATCGATGATCTC
CAAGCGGCGCTGTTGCAGCGAGAGACGATCCTCCGACATGACCAAGGCGA
ACATAACCAGCGAAATGAACTGGGAGGTGTAGGCCTTCGTGGAGGCCACT
CCGATCTCGGGTCCAGCGTTGATGTGGACGCCACAGTGCGACTCGCGGCA
GATGCTGCTGCCCACCGTGTTGGTAACGCCCACGATGAGCGCTCCTCGCT
GCTTGCAGTATCTGAGCGCCATCAGGGTGTCCGCTGTCTCGCCCGATTGG
GAGATGAAGAAGCACACGTCGTCCCGGAAAATGGGCGTGTTTCTGTCCCA
GAAATCGGAGGCCAGTTCCACCATAACGGGCAGTTCGGTCAGTTCCTCCA
GCAGCTGCCTG
BS07205.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1345-PA | 2052 | Gfat2-RA | 1221..2052 | 848..17 | 4160 | 100 | Minus |
| CG1345-PA | 2052 | Gfat2-RA | 1158..1217 | 911..852 | 300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat2-RA | 2545 | CG1345-RA | 1377..2271 | 911..17 | 4430 | 99.8 | Minus |
| Gfat1-RH | 2601 | CG12449-RH | 1520..2412 | 910..18 | 1240 | 76.5 | Minus |
| Gfat1-RD | 2363 | CG12449-RD | 1282..2174 | 910..18 | 1240 | 76.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28337870..28338389 | 392..911 | 2555 | 99.4 | Plus |
| 3R | 32079331 | 3R | 28337293..28337668 | 17..392 | 1880 | 100 | Plus |
| 3R | 32079331 | 3R | 4136742..4137094 | 910..558 | 700 | 79.9 | Minus |
| 3R | 32079331 | 3R | 4137319..4137693 | 392..18 | 570 | 76.8 | Minus |
Blast to na_te.dros performed 2015-02-12 00:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 1157..1261 | 273..169 | 128 | 64.2 | Minus |
BS07205.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:33 Download gff for
BS07205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-PA | 1158..2052 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:57 Download gff for
BS07205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1345-PA | 1158..2052 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:46:10 Download gff for
BS07205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 1377..2273 | 13..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:12:29 Download gff for
BS07205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 1377..2273 | 13..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:12:29 Download gff for
BS07205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28337289..28337667 | 13..391 | 99 | <- | Plus |
| 3R | 28337870..28338389 | 392..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:46:10 Download gff for
BS07205.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24163011..24163389 | 13..391 | 99 | <- | Plus |
| arm_3R | 24163592..24164111 | 392..911 | 99 | | Plus |
BS07205.5prime Sequence
859 bp (826 high quality bases) assembled on 2006-01-06
> BS07205.5prime
GAAGTTATCAGTCGACATGTGTGGCATATTCGCGTACCTAAACTACTTGA
CGCCCAAGTCGCGACAGGAGGTCCTGGATCTCCTGTTGCAGGGACTGAAG
CGGCTGGAGTACCGCGGCTACGACTCCACGGGCATAGCCATCGATGCGCT
GAACTCTGGCGAGGCACAGTCCATAATGCTGGTGAAGCGCACCGGGAAGG
TGAAGGTGCTGGAGGATGCGGTGGCGGAGGTGTGTCGCGGCCAGGACTAC
TCGCTGCCCATCGACACCCACATAGGCATAGCACACACGCGCTGGGCCAC
CCACGGTGTGCCCTCCGAGGTCAACTCGCATCCGCAGCGATCCGATGAGG
ATAATAGCTTTGTGGTGGTGCACAATGGCATTATAACCAACTACAAGGAT
GTGAAGACGCTGCTGGAGAAGCGCGGATATGTATTTGAGTCCGACACGGA
CACGGAGGTGATTGCCAAGCTGGTACACCACCTGTGGCAGCAGCATCCTG
GCTACACTTTCGGCGAGCTCGTGGAGCAGGCCATTCAGCAGCTGGAGGGC
GCCTTCGCCATCGCCTTCAAGTCGAAGCACTTCCCGGGCGAGTGCGTGGC
CTCCAGGCGAGGCTCACCGCTTCTGGTGGGCATCAAGGCCAAGACCAAGC
TGGCCACCGATCACATACCCATCCTGTACGCCAAGGCCCATCGGCCACAT
GGTCAGCCGCAGCAGCAGGCCTATCAACTATTGCCGCCCGGCGATTGCAA
CGCCGAGTTTCAACCGCTGGAGCGCAAGGAAGTGGAGTACTTCTTCGCCT
CGGACGCATCGGCTGTTATAGAGCACACGAATCGGGTGATTTACCTGGAA
GATGACGAC
BS07205.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1345-PA | 2052 | Gfat2-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat2-RA | 2545 | CG1345-RA | 220..1062 | 17..859 | 4215 | 100 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 596..1010 | 266..680 | 455 | 74.6 | Plus |
| Gfat1-RD | 2363 | CG12449-RD | 394..808 | 266..680 | 455 | 74.6 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 356..465 | 17..126 | 205 | 80.2 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 1124..1206 | 776..858 | 190 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28338704..28339546 | 859..17 | 4215 | 100 | Minus |
| 3R | 32079331 | 3R | 4133499..4133913 | 266..680 | 455 | 74 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:20:16 has no hits.
BS07205.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:34 Download gff for
BS07205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:52:59 Download gff for
BS07205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1345-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:58:16 Download gff for
BS07205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 215..1062 | 8..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:19 Download gff for
BS07205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 215..1062 | 8..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:19 Download gff for
BS07205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28338704..28339551 | 8..859 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:58:16 Download gff for
BS07205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24164426..24165273 | 8..859 | 99 | | Minus |
BS07205.complete Sequence
2084 bp assembled on 2008-01-02
GenBank Submission: FJ635765
> BS07205.complete
GAAGTTATCAGTCGACATGTGTGGCATATTCGCGTACCTAAACTACTTGA
CGCCCAAGTCGCGACAGGAGGTCCTGGATCTCCTGTTGCAGGGACTGAAG
CGGCTGGAGTACCGCGGCTACGACTCCACGGGCATAGCCATCGATGCGCT
GAACTCTGGCGAGGCACAGTCCATAATGCTGGTGAAGCGCACCGGGAAGG
TGAAGGTGCTGGAGGATGCGGTGGCGGAGGTGTGTCGCGGCCAGGACTAC
TCGCTGCCCATCGACACCCACATAGGCATAGCACACACGCGCTGGGCCAC
CCACGGTGTGCCCTCCGAGGTCAACTCGCATCCGCAGCGATCCGATGAGG
ATAATAGCTTTGTGGTGGTGCACAATGGCATTATAACCAACTACAAGGAT
GTGAAGACGCTGCTGGAGAAGCGCGGATATGTATTTGAGTCCGACACGGA
CACGGAGGTGATTGCCAAGCTGGTACACCACCTGTGGCAGCAGCATCCTG
GCTACACTTTCGGCGAGCTCGTGGAGCAGGCCATTCAGCAGCTGGAGGGC
GCCTTCGCCATCGCCTTCAAGTCGAAGCACTTCCCGGGCGAGTGCGTGGC
CTCCAGGCGAGGCTCACCGCTTCTGGTGGGCATCAAGGCCAAGACCAAGC
TGGCCACCGATCACATACCCATCCTGTACGCCAAGGCCCATCGGCCACAT
GGTCAGCCGCAGCAGCAGGCCTATCAACTATTGCCGCCCGGCGATTGCAA
CGCCGAGTTTCAACCGCTGGAGCGCAAGGAAGTGGAGTACTTCTTCGCCT
CGGACGCATCGGCTGTTATAGAGCACACGAATCGGGTGATTTACCTGGAA
GATGACGACGTGGCCGCCGTCAAGAGCGATGGCACGCTCAGCATTCATCG
CCTAAACAAATCATCCGATGATCCGCACGCCCGCGAGATCATCACGCTGA
AAATGGAGATCCAGCAGATCATGAAGGGCAACTACGACTACTTTATGCTG
AAGGAGATCTTCGAGCAGCCGGAATCCGTGGTCAACACCATGCGCGGCAG
GATGAGGTTCGATACGCAGACCGTGGTTCTGGGTGGCATCAAGGAGTACA
TACCGGAGATCAAGCGCTGCCGCCGCTTGATGCTAATTGCGTGCGGCACA
TCCTACCACAGTGCGGTGGCCACCAGGCAGCTGCTGGAGGAACTGACCGA
ACTGCCCGTTATGGTGGAACTGGCCTCCGATTTTCTGGACAGAAACACGC
CCATTTTCCGGGACGACGTGTGCTTCTTCATCTCCCAATCGGGCGAGACA
GCGGACACCCTGATGGCGCTCAGATACTGCAAGCAGCGAGGAGCGCTCAT
CGTGGGCGTTACCAACACGGTGGGCAGCAGCATCTGCCGCGAGTCGCACT
GTGGCGTCCACATCAACGCTGGACCCGAGATCGGAGTGGCCTCCACGAAG
GCCTACACCTCCCAGTTCATTTCGCTGGTTATGTTCGCCTTGGTCATGTC
GGAGGATCGTCTCTCGCTGCAACAGCGCCGCTTGGAGATCATCGATGGCC
TATCGCAGCTGGACGAGCACATTAGGACTGTCCTCAAGCTGAACTCGCAG
GTGCAGCAGCTTGCCAAGGAGTTGTACGAGCACAAGTCGCTGCTCATTAT
GGGCAGGGGCTTCAACTTCGCCACCTGTTTGGAGGGCGCACTGAAAGTCA
AGGAGCTGACGTACATGCACAGCGAAGGAATCCTGGCTGGAGAACTGAAA
CACGGACCACTGGCCCTGGTGGACAAGGAGATGCCCGTGCTGATGATCGT
GCTGCGGGATCCGGTGTACACCAAGTGCATGAATGCACTGCAGCAGGTGA
CGTCCCGCAAGGGCAGACCGATCCTAATCTGCGAGGAGGGCGACAACGAG
ACCATGTCCTTCTCCACGCGTTCGCTGCAGATCCCGAGGACCGTGGACTG
CCTGCAGGGCGTGCTCACGGTGATTCCGCTCCAGCTGCTGTCCTACCACA
TCGCCGTGCTCCGCGGCTGCGACGTGGACTGCCCCAGGAACCTGGCCAAG
TCGGTGACCGTGGAGTAGAAGCTTTCTAGACCAT
BS07205.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:05:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat2-RA | 2052 | CG1345-PA | 1..2052 | 17..2068 | 10260 | 100 | Plus |
| Gfat1-RH | 2058 | CG12449-PH | 769..2057 | 776..2067 | 1760 | 75.9 | Plus |
| Gfat1-RD | 2022 | CG12449-PD | 733..2021 | 776..2067 | 1760 | 75.9 | Plus |
| Gfat1-RH | 2058 | CG12449-PH | 241..655 | 266..680 | 455 | 74 | Plus |
| Gfat1-RH | 2058 | CG12449-PH | 1..110 | 17..126 | 205 | 79.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat2-RA | 2545 | CG1345-RA | 220..2271 | 17..2068 | 10260 | 100 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 1124..2412 | 776..2067 | 1760 | 75.9 | Plus |
| Gfat1-RD | 2363 | CG12449-RD | 886..2174 | 776..2067 | 1760 | 75.9 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 596..1010 | 266..680 | 455 | 74 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 356..465 | 17..126 | 205 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28337870..28339546 | 1693..17 | 8385 | 100 | Minus |
| 3R | 32079331 | 3R | 28337293..28337668 | 2068..1693 | 1880 | 100 | Minus |
| 3R | 32079331 | 3R | 4136484..4137094 | 917..1527 | 1150 | 79.2 | Plus |
| 3R | 32079331 | 3R | 4137319..4137693 | 1693..2067 | 570 | 76.8 | Plus |
| 3R | 32079331 | 3R | 4133499..4133913 | 266..680 | 455 | 74 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:05:03 has no hits.
BS07205.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:55 Download gff for
BS07205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 1..2052 | 17..2068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:08 Download gff for
BS07205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 223..2274 | 17..2068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:20 Download gff for
BS07205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 220..2271 | 17..2068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:55 Download gff for
BS07205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 218..2276 | 8..2072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:38 Download gff for
BS07205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 220..2271 | 17..2068 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:38 Download gff for
BS07205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28337293..28337667 | 1694..2068 | 100 | <- | Minus |
| 3R | 28337870..28339546 | 17..1693 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:20 Download gff for
BS07205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24163592..24165268 | 17..1693 | 100 | | Minus |
| arm_3R | 24163015..24163389 | 1694..2068 | 100 | <- | Minus |
BS07205.pep Sequence
Translation from 16 to 2067
> BS07205.pep
MCGIFAYLNYLTPKSRQEVLDLLLQGLKRLEYRGYDSTGIAIDALNSGEA
QSIMLVKRTGKVKVLEDAVAEVCRGQDYSLPIDTHIGIAHTRWATHGVPS
EVNSHPQRSDEDNSFVVVHNGIITNYKDVKTLLEKRGYVFESDTDTEVIA
KLVHHLWQQHPGYTFGELVEQAIQQLEGAFAIAFKSKHFPGECVASRRGS
PLLVGIKAKTKLATDHIPILYAKAHRPHGQPQQQAYQLLPPGDCNAEFQP
LERKEVEYFFASDASAVIEHTNRVIYLEDDDVAAVKSDGTLSIHRLNKSS
DDPHAREIITLKMEIQQIMKGNYDYFMLKEIFEQPESVVNTMRGRMRFDT
QTVVLGGIKEYIPEIKRCRRLMLIACGTSYHSAVATRQLLEELTELPVMV
ELASDFLDRNTPIFRDDVCFFISQSGETADTLMALRYCKQRGALIVGVTN
TVGSSICRESHCGVHINAGPEIGVASTKAYTSQFISLVMFALVMSEDRLS
LQQRRLEIIDGLSQLDEHIRTVLKLNSQVQQLAKELYEHKSLLIMGRGFN
FATCLEGALKVKELTYMHSEGILAGELKHGPLALVDKEMPVLMIVLRDPV
YTKCMNALQQVTSRKGRPILICEEGDNETMSFSTRSLQIPRTVDCLQGVL
TVIPLQLLSYHIAVLRGCDVDCPRNLAKSVTVE*
BS07205.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat2-PA | 683 | CG1345-PA | 1..683 | 1..683 | 3516 | 100 | Plus |
| Gfat1-PH | 685 | CG12449-PH | 1..685 | 1..683 | 2924 | 82.6 | Plus |
| Gfat1-PD | 673 | CG12449-PD | 1..673 | 1..683 | 2916 | 83.3 | Plus |
| Gfat1-PA | 694 | CG12449-PA | 1..694 | 1..683 | 2916 | 81.6 | Plus |
| Gfat1-PN | 694 | CG12449-PN | 1..694 | 1..683 | 2916 | 81.6 | Plus |
