Clone Sequence Records
BS07206.3prime Sequence
840 bp (831 high quality bases) assembled on 2006-01-06
> BS07206.3prime
ATGGTCTAGAAAGCTTTTATCCTGCAGAGAGAGAAGCTGCCACCTCCTTG
AGTTTGTCGGGCAGCACATTGGCCACACGCTGCAAAAGACCCGAAGTCGG
CTTCTCCGCGCAAAGGACGACCAGCTCGACGGCGTTGTCGCCGTGGAGCA
GCAGCCCCTTGGCCAGGTAGCCCACTCGCATCACTCCCTTCAGGATGCGC
ACGACATTGCCACCATTGTCGGCGTCTTTTTGGAACGAGAAGATCTGATT
GTCGCGTCCGTCTTTCTCCGACGGCTTTTCAGCCTTGTCCTTCTTATTGG
CCGCTCCGGCATCGCTGGGCTGCTCGGCCAGGGCATCGGAGACCAATTTT
AGGGCCCTCTCGGTGTGCGAGACGATGCGCTGGATGGTCTGCAGCTCCTC
CTCCTTCGGATAGATCTCGGCGTGACGGGCAATGGCGTGGCGATCATCGG
TGCTTTCCGGACGACGAACATTTCCGCCGGGCATCATGCCAAAGTGCGGC
GGCGGTCCATTGCCCATGCGCCCAAAGCGCTGGGCACCTCCGAAACTGCG
CGACATCCAGTTGTTGTAGTCATACTCTTCGTTGTATTGTCGGTTGCGCT
GCTCCTCCCAGTAGCCGCCGTCGTGATCATCACCGCCGCGATGCGAGGAC
ATCATGGCCCGGTTGGCACGGGCCTCAGCCAGGCGGCGCTGGCGAGGAGT
GGGCTTGAAGTCGACAACTAGATCTGGCTGCACCTTTCGCTTGTACTGCA
AGCGATGGCGACGGCCCTTCATATGCATCTCTTTGGCATTCGGGTCGTTG
AACTTACAATCGCACAGCTTGCAATTAAAGCTCAAAATCT
BS07206.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5215-PA | 1908 | Zn72D-RA | 1085..1908 | 840..17 | 4120 | 100 | Minus |
| CG5215-PB | 2655 | Zn72D-RB | 1085..1888 | 840..37 | 4020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zn72D-RA | 3410 | CG5215-RA | 1277..2100 | 840..17 | 4120 | 100 | Minus |
| Zn72D-RD | 3240 | CG5215-RD | 1310..2113 | 840..37 | 4020 | 100 | Minus |
| Zn72D-RC | 3106 | CG5215-RC | 1176..1979 | 840..37 | 4020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16109622..16110124 | 37..539 | 2515 | 100 | Plus |
| 3L | 28110227 | 3L | 16110480..16110785 | 535..840 | 1530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:19:40 has no hits.
BS07206.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:35 Download gff for
BS07206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-PA | 1085..1908 | 17..840 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:00 Download gff for
BS07206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5215-PA | 1085..1908 | 17..840 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:54:08 Download gff for
BS07206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RA | 1277..2110 | 3..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:44:20 Download gff for
BS07206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RA | 1277..2110 | 3..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:44:20 Download gff for
BS07206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16110483..16110785 | 538..840 | 100 | | Plus |
| 3L | 16109622..16110122 | 37..537 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:54:08 Download gff for
BS07206.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16103583..16103885 | 538..840 | 100 | | Plus |
| arm_3L | 16102722..16103222 | 37..537 | 100 | <- | Plus |
BS07206.5prime Sequence
960 bp (838 high quality bases) assembled on 2006-01-06
> BS07206.5prime
GAAGTTATCAGTCGACATGGCCAACAACAACTACGCCGGGTTTAACTACG
GCGGCACCCAGTACAATACGGGCCAAGTCTCGTACCCGGCGGTAACCAAT
GCCACCTACGCGAATGCGGCCGCCTATCAGAATGCCGCTGTGGCCGCCGG
ACAGGGTGGTTATGGCGGAGCAGCAGGAGCGGGCGCTGGCGCCACCTCTG
GCCCTGGGGCGGGGGGTTATGGTGGCTACGGCGACTATCGAAGTGCCATG
CAATACGACGCCACCAAGACATTCTATCAGCAGTCGCCGGCCAGCTACAA
CGCCTCCGGTTCGACAGCCTCGGTCAGCAAGACGCACTACTCGGCTCCGC
CAGTCAAGAATCAGGTCAAGGGCAAGATGGACAAGTCGAACGGTGGTCCC
AAGCCCCCTAGTTCGGCTCCTCCGGCGGGCAACAATTACAGTGGCTATGA
TACAGCACTCTACAATGCGGCAAGCATGTATGTGGCCCAACAGCATCAGG
GCAATCCAAACCAAAAACCAAATGGCGGCGCCAATAACTGGTATCAGCGT
AAGATGGGAGCCACCATACCAGGAGCAACGGCCATAAGGGGTATGCGTCC
GAAGGCACCTCCACGTCCCCAGCAGCTGCACTACTGCGAAGTGTGCAAAA
TCTCGTGCGCCGGGCCGCAGACTTATCGCGAGCATCTGGAGGGTCAGAAG
CATAAGAAACGCGAGGCTTCGCTGAAGATGTCCGCTAGTGCCAACAGTGC
TACACAAAATCGTGGTAACAACTACCACTGCGAGCTGTGCGATGTAACAT
GCACTGGTACGGACGCATATGCCGCCCATGTACGCGGAGCCAAGCATCAA
AAGGTGGTCAAGTTGCACCAGAAACTGGGCAAACCCATTCCCTCGGAGGA
GCCCAAAAAGATGGGCAAGATCAACTTTGTGCCCGCTGCTGCTGGCGGAG
CTGGTGTTGC
BS07206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5215-PA | 1908 | Zn72D-RA | 1..944 | 17..960 | 4695 | 99.8 | Plus |
| CG5215-PB | 2655 | Zn72D-RB | 1..944 | 17..960 | 4695 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zn72D-RD | 3240 | CG5215-RD | 226..1169 | 17..960 | 4705 | 99.9 | Plus |
| Zn72D-RC | 3106 | CG5215-RC | 92..1035 | 17..960 | 4705 | 99.9 | Plus |
| Zn72D-RF | 3423 | CG5215-RF | 409..1352 | 17..960 | 4705 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:40:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16110926..16111869 | 960..17 | 4705 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:40:26 has no hits.
BS07206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:36 Download gff for
BS07206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-PA | 1..944 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:01 Download gff for
BS07206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5215-PB | 1..944 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:42 Download gff for
BS07206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RF | 404..1352 | 13..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:21 Download gff for
BS07206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RF | 404..1352 | 13..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:21 Download gff for
BS07206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16110926..16111870 | 17..960 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:42 Download gff for
BS07206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16104026..16104970 | 17..960 | 99 | -> | Minus |
BS07206.complete Sequence
1940 bp assembled on 2008-01-02
GenBank Submission: FJ635766
> BS07206.complete
GAAGTTATCAGTCGACATGGCCAACAACAACTACGCCGGGTTTAACTACG
GCGGCACCCAGTACAATACGGGCCAAGTCTCGTACCCGGCGGTAACCAAT
GCCACCTACGCGAATGCGGCCGCCTATCAGAATGCCGCTGTGGCCGCCGG
ACAGGGTGGTTATGGCGGAGCAGCAGGAGCGGGCGCTGGCGCCACCTCTG
GCCCTGGGGCGGGGGGTTATGGTGGCTACGGCGACTATCGAAGTGCCATG
CAATACGACGCCACCAAGACATTCTATCAGCAGTCGCCGGCCAGCTACAA
CGCCTCCGGTTCGACAGCCTCGGTCAGCAAGACGCACTACTCGGCTCCGC
CAGTCAAGAATCAGGTCAAGGGCAAGATGGACAAGTCGAACGGTGGTCCC
AAGCCCCCTAGTTCGGCTCCTCCGGCGGGCAACAATTACAGTGGCTATGA
TACAGCACTCTACAATGCGGCAAGCATGTATGTGGCCCAACAGCATCAGG
GCAATCCAAACCAAAAACCAAATGGCGGCGCCAATAACTGGTATCAGCGT
AAGATGGGAGCCACCATACCAGGAGCAACGGCCATAAGGGGTATGCGTCC
GAAGGCACCTCCACGTCCCCAGCAGCTGCACTACTGCGAAGTGTGCAAAA
TCTCGTGCGCCGGGCCGCAGACTTATCGCGAGCATCTGGAGGGTCAGAAG
CATAAGAAACGCGAGGCTTCGCTGAAGATGTCCGCTAGTGCCAACAGTGC
TACACAAAATCGTGGTAACAACTACCACTGCGAGCTGTGCGATGTAACAT
GCACTGGTACGGACGCATATGCCGCCCATGTACGCGGAGCCAAGCATCAG
AAGGTGGTCAAGTTGCACCAGAAACTGGGCAAACCCATTCCCTCGGAGGA
GCCCAAAAAGATGGGCAAGATCAACTTTGTGCCCGCTGCTGCTGGCGGAG
CTGGTGTTGCCAAGACCGAAGGTGGCGCGAACGAGAGCGATGCAGCTGGA
GATCTCGATGATAATCTGGACGATTCGCTGGGCGAAAACACGGACAACAT
TAAGCCAGTAGGCGGCGAGTATATTGAAGAGGTCAAGGACGAAGAGGGCA
AGATTTTGAGCTTTAATTGCAAGCTGTGCGATTGTAAGTTCAACGACCCG
AATGCCAAAGAGATGCATATGAAGGGCCGTCGCCATCGCTTGCAGTACAA
GCGAAAGGTGCAGCCAGATCTAGTTGTCGACTTCAAGCCCACTCCTCGCC
AGCGCCGCCTGGCTGAGGCCCGTGCCAACCGGGCCATGATGTCCTCGCAT
CGCGGCGGTGATGATCACGACGGCGGCTACTGGGAGGAGCAGCGCAACCG
ACAATACAACGAAGAGTATGACTACAACAACTGGATGTCGCGCAGTTTCG
GAGGTGCCCAGCGCTTTGGGCGCATGGGCAATGGACCGCCGCCGCACTTT
GGCATGATGCCCGGCGGAAATGTTCGTCGTCCGGAAAGCACCGATGATCG
CCACGCCATTGCCCGTCACGCCGAGATCTATCCGAAGGAGGAGGAGCTGC
AGACCATCCAGCGCATCGTCTCGCACACCGAGAGGGCCCTAAAATTGGTC
TCCGATGCCCTGGCCGAGCAGCCCAGCGATGCCGGAGCGGCCAATAAGAA
GGACAAGGCTGAAAAGCCGTCGGAGAAAGACGGACGCGACAATCAGATCT
TCTCGTTCCAAAAAGACGCCGACAATGGTGGCAATGTCGTGCGCATCCTG
AAGGGAGTGATGCGAGTGGGCTACCTGGCCAAGGGGCTGCTGCTCCACGG
CGACAACGCCGTCGAGCTGGTCGTCCTTTGCGCGGAGAAGCCGACTTCGG
GTCTTTTGCAGCGTGTGGCCAATGTGCTGCCCGACAAACTCAAGGAGGTG
GCAGCTTCTCTCTCTGCAGGATAAAAGCTTTCTAGACCAT
BS07206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zn72D-RA | 1908 | CG5215-PA | 1..1908 | 17..1924 | 9540 | 100 | Plus |
| Zn72D-RD | 2655 | CG5215-PD | 1..1888 | 17..1904 | 9440 | 100 | Plus |
| Zn72D-RC | 2655 | CG5215-PC | 1..1888 | 17..1904 | 9440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zn72D-RA | 3410 | CG5215-RA | 193..2100 | 17..1924 | 9540 | 100 | Plus |
| Zn72D-RD | 3240 | CG5215-RD | 226..2113 | 17..1904 | 9440 | 100 | Plus |
| Zn72D-RC | 3106 | CG5215-RC | 92..1979 | 17..1904 | 9440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16110480..16111869 | 1406..17 | 6950 | 100 | Minus |
| 3L | 28110227 | 3L | 16109622..16110124 | 1904..1402 | 2515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:33:43 has no hits.
BS07206.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:06:56 Download gff for
BS07206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RA | 1..1908 | 17..1924 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:18 Download gff for
BS07206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RA | 171..2076 | 17..1922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:19 Download gff for
BS07206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RA | 193..2098 | 17..1922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:06:56 Download gff for
BS07206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RA | 166..2088 | 13..1938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:08 Download gff for
BS07206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RA | 193..2098 | 17..1922 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:08 Download gff for
BS07206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16109037..16109054 | 1905..1922 | 100 | <- | Minus |
| 3L | 16109622..16110122 | 1404..1904 | 100 | <- | Minus |
| 3L | 16110483..16111869 | 17..1403 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:19 Download gff for
BS07206.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16102137..16102154 | 1905..1922 | 100 | <- | Minus |
| arm_3L | 16102722..16103222 | 1404..1904 | 100 | <- | Minus |
| arm_3L | 16103583..16104969 | 17..1403 | 100 | | Minus |
BS07206.pep Sequence
Translation from 16 to 1923
> BS07206.pep
MANNNYAGFNYGGTQYNTGQVSYPAVTNATYANAAAYQNAAVAAGQGGYG
GAAGAGAGATSGPGAGGYGGYGDYRSAMQYDATKTFYQQSPASYNASGST
ASVSKTHYSAPPVKNQVKGKMDKSNGGPKPPSSAPPAGNNYSGYDTALYN
AASMYVAQQHQGNPNQKPNGGANNWYQRKMGATIPGATAIRGMRPKAPPR
PQQLHYCEVCKISCAGPQTYREHLEGQKHKKREASLKMSASANSATQNRG
NNYHCELCDVTCTGTDAYAAHVRGAKHQKVVKLHQKLGKPIPSEEPKKMG
KINFVPAAAGGAGVAKTEGGANESDAAGDLDDNLDDSLGENTDNIKPVGG
EYIEEVKDEEGKILSFNCKLCDCKFNDPNAKEMHMKGRRHRLQYKRKVQP
DLVVDFKPTPRQRRLAEARANRAMMSSHRGGDDHDGGYWEEQRNRQYNEE
YDYNNWMSRSFGGAQRFGRMGNGPPPHFGMMPGGNVRRPESTDDRHAIAR
HAEIYPKEEELQTIQRIVSHTERALKLVSDALAEQPSDAGAANKKDKAEK
PSEKDGRDNQIFSFQKDADNGGNVVRILKGVMRVGYLAKGLLLHGDNAVE
LVVLCAEKPTSGLLQRVANVLPDKLKEVAASLSAG*
BS07206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zn72D-PA | 635 | CG5215-PA | 1..635 | 1..635 | 3392 | 100 | Plus |
| Zn72D-PD | 884 | CG5215-PD | 1..629 | 1..629 | 3366 | 100 | Plus |
| Zn72D-PC | 884 | CG5215-PC | 1..629 | 1..629 | 3366 | 100 | Plus |
| Zn72D-PF | 884 | CG5215-PF | 1..629 | 1..629 | 3366 | 100 | Plus |
| Zn72D-PE | 631 | CG5215-PE | 1..629 | 1..629 | 3366 | 100 | Plus |
