Clone Sequence Records
BS07210.3prime Sequence
914 bp (739 high quality bases) assembled on 2006-01-06
> BS07210.3prime
ATGGTCTAGAAAGCTTCACTTGCCCATCTTGGGAGCGGTGTCTTTGCAGA
TCGTCTGTGCAATGAATTCGATAAGAGTACGAGTGGGTCGGCCAGCCATT
CCGCGTCGCAGGTACTCGAAGTCAATACCGTTGGTGACCATCACATTGGT
GGCATCAATATGCATCCATTGGCCGCAAGGCACAAATTCACGAAGGAAGG
CGGCAGCCTTGCAAGGGCGTCCACCACGACCGATACCGTAGTTCTGGACA
TCACTTCGTCCTCCGGCACGAACCGCCTTGCTGTAGAAGTTCCACAACGG
GAAGCGCCACACGCGGTCTCCAGTGTGCATGCTGGCGTGCTTGATCTGCT
GCCAAAGGATCTCGGAGTTGGTGAACACACCGCAAGCAGCTTCGTCGAGG
GACTGACGCATGTATCCCGAACAGGTGCCGATGTCAATGATGCACTTGGG
GCAGAAGTTCTGGGCATACAGCAGGGCATCGGCCAGAACCAAGACATCCT
CGTGATCCGTGCACTGCACCTCAATGGTCTTGCCATTCATAGACTTGACC
ATGTCACCTGGTCGGAAGGAGTTGCAGCCAACGACGTTTTCGCACAGAGG
AATAAGGCCTCGGATATTGACAGGCAATCTAAGTCCAGCAACGGCCCGAC
ATGTGGCCACCACCACAGCCGCTCCAGTCATGTCGCCGCGCATGTTGAAG
AGCTCCTTCTTTTTCTTCAGGCACAGACCGCCGGCATCGTAGGTGATGCC
CTGTCCAACCAGGACGATGGGTCTCTCCTCCGCGCAGGTGCCGTAGTAGC
TCAGCTCCAGAAAGATTGGTGGTTCGCAAGAGGCCTTTTCCACCCGCCAG
AAGGCGTGCATCGACTGGCTCTCAGCCCAACCCTCGACTTTGACCTCTAC
TTTGACGCCGGACT
BS07210.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6372-PA | 1668 | CG6372-RA | 840..1666 | 844..18 | 4110 | 99.8 | Minus |
CG32351-PA | 1659 | CG32351-RA | 1297..1536 | 378..139 | 875 | 94.5 | Minus |
CG32351-PA | 1659 | CG32351-RA | 831..926 | 844..749 | 330 | 93.7 | Minus |
CG6372-PA | 1668 | CG6372-RA | 770..835 | 914..849 | 305 | 98.4 | Minus |
CG32351-PA | 1659 | CG32351-RA | 761..826 | 914..849 | 305 | 98.4 | Minus |
CG32351-PA | 1659 | CG32351-RA | 1078..1166 | 597..509 | 170 | 87.6 | Minus |
CG32351-PA | 1659 | CG32351-RA | 1213..1268 | 462..407 | 155 | 91 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap1-RA | 2121 | CG6372-RA | 972..1868 | 914..18 | 4410 | 99.6 | Minus |
S-Lap2-RA | 2093 | CG32351-RA | 1017..1920 | 914..11 | 2540 | 85.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8618556..8619021 | 621..156 | 2330 | 100 | Minus |
3L | 28110227 | 3L | 8621252..8621717 | 621..156 | 1475 | 87.8 | Minus |
3L | 28110227 | 3L | 8618206..8618500 | 914..620 | 1400 | 98.3 | Minus |
3L | 28110227 | 3L | 8620904..8621183 | 914..635 | 890 | 87.9 | Minus |
3L | 28110227 | 3L | 8619083..8619221 | 156..18 | 695 | 100 | Minus |
3L | 28110227 | 3L | 8621773..8621918 | 156..11 | 190 | 75.3 | Minus |
Blast to na_te.dros performed on 2015-01-30 14:16:31 has no hits.
BS07210.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:44 Download gff for
BS07210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6372-PA | 770..1668 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:12 Download gff for
BS07210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6372-PA | 770..1668 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:01:36 Download gff for
BS07210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap1-RA | 972..1868 | 18..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:33:23 Download gff for
BS07210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap1-RA | 972..1868 | 18..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:33:23 Download gff for
BS07210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8618206..8618498 | 622..914 | 98 | -> | Minus |
3L | 8618556..8619020 | 157..621 | 100 | -> | Minus |
3L | 8619083..8619221 | 18..156 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:01:36 Download gff for
BS07210.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8611306..8611598 | 622..914 | 98 | -> | Minus |
arm_3L | 8611656..8612120 | 157..621 | 100 | -> | Minus |
arm_3L | 8612183..8612321 | 18..156 | 100 | | Minus |
BS07210.5prime Sequence
853 bp (800 high quality bases) assembled on 2006-01-06
> BS07210.5prime
GAAGTTATCAGTCGACATGTTCGGAAAAACTCGTCAGTTGCTATTCAGCG
TTTGCATTCGGTCCCCGGTGTGCCGACGATATGTCCCGAAGTTCATCAAG
CGTTCATACGCCTCGCAGGCGGTTAACCAGATGCTGCTGCTCCAGCAGAT
GGACATCTGTGCGGATCAGCCGTCGCGAGCCTTGGTCATAGGCGTCTATG
CGGATGAGGAGGACAAGAACGATGCCGGCATTCTGACCCCCGCCGGCTGG
CGTTATAATCTTCAAAAGACAAATGGTCGTCTGATAGAGGTGCTCCGGAT
GTCGGGACCCATGCCCAAGAGAGGCGAGGCCCGTCTTCTCTTCGCCGTTG
AGCCGGAGCGTATTCCCTATTATTCTGTGGTGGCGGTCGTTGGTCTGGGT
AAGGAGTGCTTGGGCTATAATCCCTATGAGGTCCTGGACGAACAGAAGGA
GGCTATCCGAAGGTCGGTGGCCGCTGCCTGTAGGATTCTCGCCGAGTTGG
ATACCGATCGTATTGAGGTGGAGAACTGCGGACACGCCGAATCGGCTGCC
GAAGGTGCCGCCTTGGGTATCTGGTTGTACCAGGAATTGCGCGATCCCAA
GACCCGAATCTTTGTTCCGGCCATCGATTTGTACGCCACCAAGGACGAGG
TCTGCGACATAGAAGGATGGCGCATTGGGCTGCAAAAGGCTGCCGCGCAG
AACCTGACCCGCCAGTTGCAGGAGATGCCCTCCAACCTTTTGACCCCCAC
TGCCTTTGCCCAGAATGTCGTCGAAGTGCTCTGTAAGTCCGGCGTCAATG
TAGAGGTCAAAGTCGAGGGTTGGGCTGAGAGCCAGTCGATGCACGCCTTC
TTG
BS07210.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6372-PA | 1668 | CG6372-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
CG32351-PA | 1659 | CG32351-RA | 596..828 | 621..853 | 915 | 95.7 | Plus |
CG32351-PA | 1659 | CG32351-RA | 82..142 | 107..167 | 155 | 90.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap1-RA | 2121 | CG6372-RA | 203..1039 | 17..853 | 4185 | 100 | Plus |
S-Lap2-RA | 2093 | CG32351-RA | 338..1084 | 107..853 | 1965 | 84.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8617437..8618273 | 17..853 | 4185 | 100 | Plus |
3L | 28110227 | 3L | 8620225..8620971 | 107..853 | 1965 | 84.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:22:33 has no hits.
BS07210.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:45 Download gff for
BS07210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6372-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:13 Download gff for
BS07210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6372-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:27:27 Download gff for
BS07210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap1-RA | 199..1039 | 14..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:00:28 Download gff for
BS07210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap1-RA | 199..1039 | 14..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:00:28 Download gff for
BS07210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8617433..8618273 | 14..853 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:27:27 Download gff for
BS07210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8610533..8611373 | 14..853 | 99 | | Plus |
BS07210.complete Sequence
1699 bp assembled on 2008-08-14
GenBank Submission: FJ635767
> BS07210.complete
GAAGTTATCAGTCGACATGTTCGGAAAAACTCGTCAGTTGCTATTCAGCG
TTTGCATTCGGTCCCCGGTGTGCCGACGATATGTCCCGAAGTTCATCAAG
CGTTCATACGCCTCGCAGGCGGTTAACCAGATGCTGCTGCTCCAGCAGAT
GGACATCTGTGCGGATCAGCCGTCGCGAGCCTTGGTCATAGGCGTCTATG
CGGATGAGGAGGACAAGAACGATGCCGGCATTCTGACCCCCGCCGGCTGG
CGTTATAATCTTCAAAAGACAAATGGTCGTCTGATAGAGGTGCTCCGGAT
GTCGGGACCCATGCCCAAGAGAGGCGAGGCCCGTCTTCTCTTCGCCGTTG
AGCCGGAGCGTATTCCCTATTATTCTGTGGTGGCGGTCGTTGGTCTGGGT
AAGGAGTGCTTGGGCTATAATCCCTATGAGGTCCTGGACGAACAGAAGGA
GGCTATCCGAAGGTCGGTGGCCGCTGCCTGTAGGATTCTCGCCGAGTTGG
ATACCGATCGTATTGAGGTGGAGAACTGCGGACACGCCGAATCGGCTGCC
GAAGGTGCCGCCTTGGGTATCTGGTTGTACCAGGAATTGCGCGATCCCAA
GACCCGAATCTTTGTTCCGGCCATCGATTTGTACGCCACCAAGGACGAGG
TCTGCGACATAGAAGGATGGCGCATTGGGCTGCAAAAGGCTGCCGCGCAG
AACCTGACCCGCCAGTTGCAGGAGATGCCCTCCAACCTTTTGACCCCCAC
TGCCTTTGCCCAGAATGTCGTCGAAGTGCTCTGTAAGTCCGGCGTCAATG
TAGAGGTCAAAGTCGAGGGTTGGGCTGAGAGCCAGTCGATGCACGCCTTC
TTGGCGGTGGGAAAGGCCTCTTGCGAACCACCAATCTTTCTGGAGCTGAG
CTACTACGGCACCTGCGCGGAGGAGAGACCCATCGTCCTGGTTGGACAGG
GCATCACCTACGATGCCGGCGGTCTGTGCCTGAAGAAAAAGAAGGAGCTC
TTCAACATGCGCGGCGACATGACTGGAGCGGCTGTGGTGGTGGCCACATG
TCGGGCCGTTGCTGGACTTAGATTGCCTGTCAATATCCGAGGCCTTATTC
CTCTGTGCGAAAACGTCGTTGGCTGCAACTCCTTCCGACCAGGTGACATG
GTCAAGTCTATGAATGGCAAGACCATTGAGGTGCAGTGCACGGATCACGA
GGATGTCTTGGTTCTGGCCGATGCCCTGCTGTATGCCCAGAACTTCTGCC
CCAAGTGCATCATTGACATCGGCACCTGTTCGGGATACATGCGTCAGTCC
CTCGACGAAGCTGCTTGCGGTGTGTTCACCAACTCCGAGATCCTTTGGCA
GCAGATCAAGCACGCCAGCATGCACACTGGAGACCGCGTGTGGCGCTTCC
CGTTGTGGAACTTCTACAGCAAGGCGGTTCGTGCCGGAGGACGAAGTGAT
GTCCAGAACTACGGTATCGGTCGTGGTGGACGCCCTTGCAAGGCTGCCGC
CTTCCTTCGTGAATTTGTGCCTTGCGGCCAATGGATGCATATTGATGCCA
CCAATGTGATGGTCACCAACGGTATTGACTTCGAGTACCTGCGACGCGGA
ATGGCTGGCCGACCCACTCGTACTCTTATCGAATTCATTGCACAGACGAT
CTGCAAAGACACCGCTCCCAAGATGGGCAAGTGAAGCTTTCTAGACCAT
BS07210.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap1-RA | 1668 | CG6372-PA | 1..1666 | 17..1682 | 8330 | 100 | Plus |
S-Lap2-RA | 1659 | CG32351-PA | 82..1647 | 107..1672 | 4230 | 84.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap1-RA | 2121 | CG6372-RA | 203..1868 | 17..1682 | 8330 | 100 | Plus |
S-Lap2-RA | 2093 | CG32351-RA | 338..1920 | 107..1689 | 4240 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8617437..8618500 | 17..1080 | 5320 | 100 | Plus |
3L | 28110227 | 3L | 8620225..8621183 | 107..1065 | 2590 | 84.7 | Plus |
3L | 28110227 | 3L | 8618556..8619021 | 1079..1544 | 2330 | 100 | Plus |
3L | 28110227 | 3L | 8621252..8621717 | 1079..1544 | 1475 | 87.8 | Plus |
3L | 28110227 | 3L | 8619083..8619221 | 1544..1682 | 695 | 100 | Plus |
3L | 28110227 | 3L | 8621773..8621918 | 1544..1689 | 190 | 75.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:15:49 has no hits.
BS07210.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:17:25 Download gff for
BS07210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6372-RA | 199..1868 | 14..1682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:28 Download gff for
BS07210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap1-RA | 208..1868 | 22..1683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:30 Download gff for
BS07210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6372-RA | 208..1868 | 22..1683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:41 Download gff for
BS07210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap1-RA | 208..1868 | 22..1683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:41 Download gff for
BS07210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8617442..8618498 | 22..1078 | 100 | -> | Plus |
3L | 8619083..8619221 | 1544..1683 | 99 | | Plus |
3L | 8618556..8619020 | 1079..1543 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:28 Download gff for
BS07210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8610542..8611598 | 22..1078 | 100 | -> | Plus |
arm_3L | 8611656..8612120 | 1079..1543 | 100 | -> | Plus |
arm_3L | 8612183..8612321 | 1544..1683 | 99 | | Plus |
BS07210.pep Sequence
Translation from 16 to 1683
> BS07210.pep
MFGKTRQLLFSVCIRSPVCRRYVPKFIKRSYASQAVNQMLLLQQMDICAD
QPSRALVIGVYADEEDKNDAGILTPAGWRYNLQKTNGRLIEVLRMSGPMP
KRGEARLLFAVEPERIPYYSVVAVVGLGKECLGYNPYEVLDEQKEAIRRS
VAAACRILAELDTDRIEVENCGHAESAAEGAALGIWLYQELRDPKTRIFV
PAIDLYATKDEVCDIEGWRIGLQKAAAQNLTRQLQEMPSNLLTPTAFAQN
VVEVLCKSGVNVEVKVEGWAESQSMHAFLAVGKASCEPPIFLELSYYGTC
AEERPIVLVGQGITYDAGGLCLKKKKELFNMRGDMTGAAVVVATCRAVAG
LRLPVNIRGLIPLCENVVGCNSFRPGDMVKSMNGKTIEVQCTDHEDVLVL
ADALLYAQNFCPKCIIDIGTCSGYMRQSLDEAACGVFTNSEILWQQIKHA
SMHTGDRVWRFPLWNFYSKAVRAGGRSDVQNYGIGRGGRPCKAAAFLREF
VPCGQWMHIDATNVMVTNGIDFEYLRRGMAGRPTRTLIEFIAQTICKDTA
PKMGK*
BS07210.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap1-PA | 555 | CG6372-PA | 1..555 | 1..555 | 2923 | 100 | Plus |
S-Lap2-PA | 552 | CG32351-PA | 1..552 | 1..555 | 2637 | 89.1 | Plus |
S-Lap8-PA | 534 | CG4439-PA | 50..534 | 54..547 | 985 | 40.6 | Plus |
S-Lap5-PA | 549 | CG18369-PA | 61..548 | 54..549 | 963 | 41.3 | Plus |
S-Lap3-PD | 535 | CG32063-PD | 47..532 | 54..548 | 944 | 39.5 | Plus |