Clone BS07210 Report

Search the DGRC for BS07210

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:72
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptS-Lap1-RA
Protein status:BS07210.pep: full length peptide match
Sequenced Size:1699

Clone Sequence Records

BS07210.3prime Sequence

914 bp (739 high quality bases) assembled on 2006-01-06

> BS07210.3prime
ATGGTCTAGAAAGCTTCACTTGCCCATCTTGGGAGCGGTGTCTTTGCAGA
TCGTCTGTGCAATGAATTCGATAAGAGTACGAGTGGGTCGGCCAGCCATT
CCGCGTCGCAGGTACTCGAAGTCAATACCGTTGGTGACCATCACATTGGT
GGCATCAATATGCATCCATTGGCCGCAAGGCACAAATTCACGAAGGAAGG
CGGCAGCCTTGCAAGGGCGTCCACCACGACCGATACCGTAGTTCTGGACA
TCACTTCGTCCTCCGGCACGAACCGCCTTGCTGTAGAAGTTCCACAACGG
GAAGCGCCACACGCGGTCTCCAGTGTGCATGCTGGCGTGCTTGATCTGCT
GCCAAAGGATCTCGGAGTTGGTGAACACACCGCAAGCAGCTTCGTCGAGG
GACTGACGCATGTATCCCGAACAGGTGCCGATGTCAATGATGCACTTGGG
GCAGAAGTTCTGGGCATACAGCAGGGCATCGGCCAGAACCAAGACATCCT
CGTGATCCGTGCACTGCACCTCAATGGTCTTGCCATTCATAGACTTGACC
ATGTCACCTGGTCGGAAGGAGTTGCAGCCAACGACGTTTTCGCACAGAGG
AATAAGGCCTCGGATATTGACAGGCAATCTAAGTCCAGCAACGGCCCGAC
ATGTGGCCACCACCACAGCCGCTCCAGTCATGTCGCCGCGCATGTTGAAG
AGCTCCTTCTTTTTCTTCAGGCACAGACCGCCGGCATCGTAGGTGATGCC
CTGTCCAACCAGGACGATGGGTCTCTCCTCCGCGCAGGTGCCGTAGTAGC
TCAGCTCCAGAAAGATTGGTGGTTCGCAAGAGGCCTTTTCCACCCGCCAG
AAGGCGTGCATCGACTGGCTCTCAGCCCAACCCTCGACTTTGACCTCTAC
TTTGACGCCGGACT

BS07210.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6372-PA 1668 CG6372-RA 840..1666 844..18 4110 99.8 Minus
CG32351-PA 1659 CG32351-RA 1297..1536 378..139 875 94.5 Minus
CG32351-PA 1659 CG32351-RA 831..926 844..749 330 93.7 Minus
CG6372-PA 1668 CG6372-RA 770..835 914..849 305 98.4 Minus
CG32351-PA 1659 CG32351-RA 761..826 914..849 305 98.4 Minus
CG32351-PA 1659 CG32351-RA 1078..1166 597..509 170 87.6 Minus
CG32351-PA 1659 CG32351-RA 1213..1268 462..407 155 91 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap1-RA 2121 CG6372-RA 972..1868 914..18 4410 99.6 Minus
S-Lap2-RA 2093 CG32351-RA 1017..1920 914..11 2540 85.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8618556..8619021 621..156 2330 100 Minus
3L 28110227 3L 8621252..8621717 621..156 1475 87.8 Minus
3L 28110227 3L 8618206..8618500 914..620 1400 98.3 Minus
3L 28110227 3L 8620904..8621183 914..635 890 87.9 Minus
3L 28110227 3L 8619083..8619221 156..18 695 100 Minus
3L 28110227 3L 8621773..8621918 156..11 190 75.3 Minus
Blast to na_te.dros performed on 2015-01-30 14:16:31 has no hits.

BS07210.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:44 Download gff for BS07210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6372-PA 770..1668 17..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:12 Download gff for BS07210.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6372-PA 770..1668 17..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:01:36 Download gff for BS07210.3prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap1-RA 972..1868 18..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:33:23 Download gff for BS07210.3prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap1-RA 972..1868 18..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:33:23 Download gff for BS07210.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8618206..8618498 622..914 98 -> Minus
3L 8618556..8619020 157..621 100 -> Minus
3L 8619083..8619221 18..156 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:01:36 Download gff for BS07210.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8611306..8611598 622..914 98 -> Minus
arm_3L 8611656..8612120 157..621 100 -> Minus
arm_3L 8612183..8612321 18..156 100   Minus

BS07210.5prime Sequence

853 bp (800 high quality bases) assembled on 2006-01-06

> BS07210.5prime
GAAGTTATCAGTCGACATGTTCGGAAAAACTCGTCAGTTGCTATTCAGCG
TTTGCATTCGGTCCCCGGTGTGCCGACGATATGTCCCGAAGTTCATCAAG
CGTTCATACGCCTCGCAGGCGGTTAACCAGATGCTGCTGCTCCAGCAGAT
GGACATCTGTGCGGATCAGCCGTCGCGAGCCTTGGTCATAGGCGTCTATG
CGGATGAGGAGGACAAGAACGATGCCGGCATTCTGACCCCCGCCGGCTGG
CGTTATAATCTTCAAAAGACAAATGGTCGTCTGATAGAGGTGCTCCGGAT
GTCGGGACCCATGCCCAAGAGAGGCGAGGCCCGTCTTCTCTTCGCCGTTG
AGCCGGAGCGTATTCCCTATTATTCTGTGGTGGCGGTCGTTGGTCTGGGT
AAGGAGTGCTTGGGCTATAATCCCTATGAGGTCCTGGACGAACAGAAGGA
GGCTATCCGAAGGTCGGTGGCCGCTGCCTGTAGGATTCTCGCCGAGTTGG
ATACCGATCGTATTGAGGTGGAGAACTGCGGACACGCCGAATCGGCTGCC
GAAGGTGCCGCCTTGGGTATCTGGTTGTACCAGGAATTGCGCGATCCCAA
GACCCGAATCTTTGTTCCGGCCATCGATTTGTACGCCACCAAGGACGAGG
TCTGCGACATAGAAGGATGGCGCATTGGGCTGCAAAAGGCTGCCGCGCAG
AACCTGACCCGCCAGTTGCAGGAGATGCCCTCCAACCTTTTGACCCCCAC
TGCCTTTGCCCAGAATGTCGTCGAAGTGCTCTGTAAGTCCGGCGTCAATG
TAGAGGTCAAAGTCGAGGGTTGGGCTGAGAGCCAGTCGATGCACGCCTTC
TTG

BS07210.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6372-PA 1668 CG6372-RA 1..837 17..853 4185 100 Plus
CG32351-PA 1659 CG32351-RA 596..828 621..853 915 95.7 Plus
CG32351-PA 1659 CG32351-RA 82..142 107..167 155 90.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap1-RA 2121 CG6372-RA 203..1039 17..853 4185 100 Plus
S-Lap2-RA 2093 CG32351-RA 338..1084 107..853 1965 84.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8617437..8618273 17..853 4185 100 Plus
3L 28110227 3L 8620225..8620971 107..853 1965 84.2 Plus
Blast to na_te.dros performed on 2015-02-11 18:22:33 has no hits.

BS07210.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:05:45 Download gff for BS07210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6372-PA 1..837 17..853 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:53:13 Download gff for BS07210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6372-PA 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:27:27 Download gff for BS07210.5prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap1-RA 199..1039 14..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:00:28 Download gff for BS07210.5prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap1-RA 199..1039 14..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:00:28 Download gff for BS07210.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8617433..8618273 14..853 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:27:27 Download gff for BS07210.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8610533..8611373 14..853 99   Plus

BS07210.complete Sequence

1699 bp assembled on 2008-08-14

GenBank Submission: FJ635767

> BS07210.complete
GAAGTTATCAGTCGACATGTTCGGAAAAACTCGTCAGTTGCTATTCAGCG
TTTGCATTCGGTCCCCGGTGTGCCGACGATATGTCCCGAAGTTCATCAAG
CGTTCATACGCCTCGCAGGCGGTTAACCAGATGCTGCTGCTCCAGCAGAT
GGACATCTGTGCGGATCAGCCGTCGCGAGCCTTGGTCATAGGCGTCTATG
CGGATGAGGAGGACAAGAACGATGCCGGCATTCTGACCCCCGCCGGCTGG
CGTTATAATCTTCAAAAGACAAATGGTCGTCTGATAGAGGTGCTCCGGAT
GTCGGGACCCATGCCCAAGAGAGGCGAGGCCCGTCTTCTCTTCGCCGTTG
AGCCGGAGCGTATTCCCTATTATTCTGTGGTGGCGGTCGTTGGTCTGGGT
AAGGAGTGCTTGGGCTATAATCCCTATGAGGTCCTGGACGAACAGAAGGA
GGCTATCCGAAGGTCGGTGGCCGCTGCCTGTAGGATTCTCGCCGAGTTGG
ATACCGATCGTATTGAGGTGGAGAACTGCGGACACGCCGAATCGGCTGCC
GAAGGTGCCGCCTTGGGTATCTGGTTGTACCAGGAATTGCGCGATCCCAA
GACCCGAATCTTTGTTCCGGCCATCGATTTGTACGCCACCAAGGACGAGG
TCTGCGACATAGAAGGATGGCGCATTGGGCTGCAAAAGGCTGCCGCGCAG
AACCTGACCCGCCAGTTGCAGGAGATGCCCTCCAACCTTTTGACCCCCAC
TGCCTTTGCCCAGAATGTCGTCGAAGTGCTCTGTAAGTCCGGCGTCAATG
TAGAGGTCAAAGTCGAGGGTTGGGCTGAGAGCCAGTCGATGCACGCCTTC
TTGGCGGTGGGAAAGGCCTCTTGCGAACCACCAATCTTTCTGGAGCTGAG
CTACTACGGCACCTGCGCGGAGGAGAGACCCATCGTCCTGGTTGGACAGG
GCATCACCTACGATGCCGGCGGTCTGTGCCTGAAGAAAAAGAAGGAGCTC
TTCAACATGCGCGGCGACATGACTGGAGCGGCTGTGGTGGTGGCCACATG
TCGGGCCGTTGCTGGACTTAGATTGCCTGTCAATATCCGAGGCCTTATTC
CTCTGTGCGAAAACGTCGTTGGCTGCAACTCCTTCCGACCAGGTGACATG
GTCAAGTCTATGAATGGCAAGACCATTGAGGTGCAGTGCACGGATCACGA
GGATGTCTTGGTTCTGGCCGATGCCCTGCTGTATGCCCAGAACTTCTGCC
CCAAGTGCATCATTGACATCGGCACCTGTTCGGGATACATGCGTCAGTCC
CTCGACGAAGCTGCTTGCGGTGTGTTCACCAACTCCGAGATCCTTTGGCA
GCAGATCAAGCACGCCAGCATGCACACTGGAGACCGCGTGTGGCGCTTCC
CGTTGTGGAACTTCTACAGCAAGGCGGTTCGTGCCGGAGGACGAAGTGAT
GTCCAGAACTACGGTATCGGTCGTGGTGGACGCCCTTGCAAGGCTGCCGC
CTTCCTTCGTGAATTTGTGCCTTGCGGCCAATGGATGCATATTGATGCCA
CCAATGTGATGGTCACCAACGGTATTGACTTCGAGTACCTGCGACGCGGA
ATGGCTGGCCGACCCACTCGTACTCTTATCGAATTCATTGCACAGACGAT
CTGCAAAGACACCGCTCCCAAGATGGGCAAGTGAAGCTTTCTAGACCAT

BS07210.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap1-RA 1668 CG6372-PA 1..1666 17..1682 8330 100 Plus
S-Lap2-RA 1659 CG32351-PA 82..1647 107..1672 4230 84.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap1-RA 2121 CG6372-RA 203..1868 17..1682 8330 100 Plus
S-Lap2-RA 2093 CG32351-RA 338..1920 107..1689 4240 84.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8617437..8618500 17..1080 5320 100 Plus
3L 28110227 3L 8620225..8621183 107..1065 2590 84.7 Plus
3L 28110227 3L 8618556..8619021 1079..1544 2330 100 Plus
3L 28110227 3L 8621252..8621717 1079..1544 1475 87.8 Plus
3L 28110227 3L 8619083..8619221 1544..1682 695 100 Plus
3L 28110227 3L 8621773..8621918 1544..1689 190 75.3 Plus
Blast to na_te.dros performed on 2014-11-27 16:15:49 has no hits.

BS07210.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:17:25 Download gff for BS07210.complete
Subject Subject Range Query Range Percent Splice Strand
CG6372-RA 199..1868 14..1682 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:28 Download gff for BS07210.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap1-RA 208..1868 22..1683 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:30 Download gff for BS07210.complete
Subject Subject Range Query Range Percent Splice Strand
CG6372-RA 208..1868 22..1683 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:41 Download gff for BS07210.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap1-RA 208..1868 22..1683 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:41 Download gff for BS07210.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8617442..8618498 22..1078 100 -> Plus
3L 8619083..8619221 1544..1683 99   Plus
3L 8618556..8619020 1079..1543 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:28 Download gff for BS07210.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8610542..8611598 22..1078 100 -> Plus
arm_3L 8611656..8612120 1079..1543 100 -> Plus
arm_3L 8612183..8612321 1544..1683 99   Plus

BS07210.pep Sequence

Translation from 16 to 1683

> BS07210.pep
MFGKTRQLLFSVCIRSPVCRRYVPKFIKRSYASQAVNQMLLLQQMDICAD
QPSRALVIGVYADEEDKNDAGILTPAGWRYNLQKTNGRLIEVLRMSGPMP
KRGEARLLFAVEPERIPYYSVVAVVGLGKECLGYNPYEVLDEQKEAIRRS
VAAACRILAELDTDRIEVENCGHAESAAEGAALGIWLYQELRDPKTRIFV
PAIDLYATKDEVCDIEGWRIGLQKAAAQNLTRQLQEMPSNLLTPTAFAQN
VVEVLCKSGVNVEVKVEGWAESQSMHAFLAVGKASCEPPIFLELSYYGTC
AEERPIVLVGQGITYDAGGLCLKKKKELFNMRGDMTGAAVVVATCRAVAG
LRLPVNIRGLIPLCENVVGCNSFRPGDMVKSMNGKTIEVQCTDHEDVLVL
ADALLYAQNFCPKCIIDIGTCSGYMRQSLDEAACGVFTNSEILWQQIKHA
SMHTGDRVWRFPLWNFYSKAVRAGGRSDVQNYGIGRGGRPCKAAAFLREF
VPCGQWMHIDATNVMVTNGIDFEYLRRGMAGRPTRTLIEFIAQTICKDTA
PKMGK*

BS07210.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap1-PA 555 CG6372-PA 1..555 1..555 2923 100 Plus
S-Lap2-PA 552 CG32351-PA 1..552 1..555 2637 89.1 Plus
S-Lap8-PA 534 CG4439-PA 50..534 54..547 985 40.6 Plus
S-Lap5-PA 549 CG18369-PA 61..548 54..549 963 41.3 Plus
S-Lap3-PD 535 CG32063-PD 47..532 54..548 944 39.5 Plus